MS017602 (gene) Bitter gourd (TR) v1

Overview


Name	MS017602
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	C2H2-like zinc finger protein, putative
Location	scaffold373: 848611 .. 849165 (+)
RNA-Seq Expression	MS017602
Synteny	MS017602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA

mRNA sequence

ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA

Coding sequence (CDS)

ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA

Protein sequence

MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL

Homology

[Close]

BLAST of MS017602 vs. NCBI nr
Match: XP_022159689.1 (protein LATE FLOWERING [Momordica charantia])

HSP 1 Score: 360.5 bits (924), Expect = 8.5e-96
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
Sbjct: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPNNQM 120
           KRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI AAAAAAHASHYHCFPNNQM
Sbjct: 61  KRISGYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI-AAAAAAHASHYHCFPNNQM 120

Query: 121 LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD 180
           LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD
Sbjct: 121 LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD 180

Query: 181 LSLHL 186
           LSLHL
Sbjct: 181 LSLHL 184

[Close]

BLAST of MS017602 vs. NCBI nr
Match: XP_038888938.1 (protein LATE FLOWERING [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 7.8e-49
Identity = 121/194 (62.37%), Postives = 141/194 (72.68%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           ME EEK+SQV E++N  +E EE P+RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
Sbjct: 1   MEYEEKLSQVAETNNNIVEMEETPTRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KRISDY+ TNF SP  P P PP  +F AS    H GL P P+YI     A H ++ HCFP
Sbjct: 61  KRISDYS-TNFSSPPSPFPAPPSLVFPASHQQHHPGLLPQPVYI-----ATHGTNLHCFP 120

Query: 121 NNQMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDH 180
           NNQ L             +ENMVY G     +RY Q G DE+N+LNW+RS+KK++SRI+H
Sbjct: 121 NNQQLL------------YENMVYCGGVCTSNRYHQCGADEENLLNWERSIKKDLSRINH 176

Query: 181 DKEKEKKLDLSLHL 186
           DKEKE+KLDLSLHL
Sbjct: 181 DKEKEQKLDLSLHL 176

[Close]

BLAST of MS017602 vs. NCBI nr
Match: XP_022996351.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41
Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 95  MEDEEQPLQVAESSSVEM--EETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 154

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KRISDY+ ++  S        P  +FA +    H  + P PMYI     AAH  + HCFP
Sbjct: 155 KRISDYSSSSTSS-------RPLSVFAGNQQLHHPAILPHPMYI-----AAHGPNLHCFP 214

Query: 121 NN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRID 180
           N+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK      
Sbjct: 215 NSQQVFYDGL----GVVPKFEDMVYYGGVCSYNRY-QCGEDEENVLNWQRSIKK------ 263

Query: 181 HDKEKEKKLDLSLHL 186
            DKEKE+KLDLSLHL
Sbjct: 275 -DKEKEQKLDLSLHL 263

[Close]

BLAST of MS017602 vs. NCBI nr
Match: KAG6606329.1 (Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036269.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41
Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 1   MEDEEQPLQVAESSSVEM--EETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 60

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KRISDY+ ++  S        P  +FA S    H  + P PMYI     AAH +  HCFP
Sbjct: 61  KRISDYSSSSASS-------RPLSVFAGSQQLHHPAILPHPMYI-----AAHGASLHCFP 120

Query: 121 NN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRID 180
           N+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK      
Sbjct: 121 NSQQVFYDGL----GVVPKFEDMVYYGGVCSYNRY-QCGEDEEHVLNWQRSIKK------ 169

Query: 181 HDKEKEKKLDLSLHL 186
            DKEKE+KLDLSLHL
Sbjct: 181 -DKEKEQKLDLSLHL 169

[Close]

BLAST of MS017602 vs. NCBI nr
Match: XP_023532770.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-41
Identity = 115/195 (58.97%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEE+   V ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 93  MEDEEQPLHVAESSSVEM--EETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 152

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KRISDY+ ++  S        P  +FA S    H  + P PMYI     AAH ++ HCFP
Sbjct: 153 KRISDYSSSSTSS-------RPLSVFAGSQQLHHPAILPHPMYI-----AAHGANLHCFP 212

Query: 121 NN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRID 180
           N+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE++VLNWQRS+KK      
Sbjct: 213 NSQQVFYDGL----GVVPKFEDMVYYGGVCSYNRY-QCGEDEEHVLNWQRSIKK------ 261

Query: 181 HDKEKEKKLDLSLHL 186
            DKEKE+KLDLSLHL
Sbjct: 273 -DKEKEQKLDLSLHL 261

[Close]

BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 7   VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 64
           +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Sbjct: 61  LSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 65/188 (34.57%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+A
Sbjct: 10  VEGEEEIKPSKEANKTDENTSSL--RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRA 69

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPN--- 120
           KR  D+   N    +        P+F +S     P   ++      A AS   CFP    
Sbjct: 70  KRAYDFVNNNDFLHT-------LPVFLSS-----PSQHHLTILGYPASAS-VACFPTVHP 129

Query: 121 NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEK 180
           +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++
Sbjct: 130 DHPIFKSSGSHVVLATSHQGRDCKGGYCCQQRVD---------ILDHHYNVVNSDKGKDQ 173

Query: 181 KLDLSLHL 186
            LDLSLHL
Sbjct: 190 CLDLSLHL 173

[Close]

BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-08
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 26 RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 64
          RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREL 87

[Close]

BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 6  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK 60
          K     +  +F         R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Sbjct: 16 KTRSSSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 22 EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 61
          E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A
Sbjct: 53 EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRA 91

[Close]

BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1E329 (protein LATE FLOWERING OS=Momordica charantia OX=3673 GN=LOC111026032 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA
Sbjct: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPNNQM 120
           KRIS YAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI AAAAAAHASHYHCFPNNQM
Sbjct: 61  KRISGYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYI-AAAAAAHASHYHCFPNNQM 120

Query: 121 LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD 180
           LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD
Sbjct: 121 LCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLD 180

Query: 181 LSLHL 186
           LSLHL
Sbjct: 181 LSLHL 184

[Close]

BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1K4H5 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42
Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 95  MEDEEQPLQVAESSSVEM--EETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 154

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KRISDY+ ++  S        P  +FA +    H  + P PMYI     AAH  + HCFP
Sbjct: 155 KRISDYSSSSTSS-------RPLSVFAGNQQLHHPAILPHPMYI-----AAHGPNLHCFP 214

Query: 121 NN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRID 180
           N+ Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE+NVLNWQRS+KK      
Sbjct: 215 NSQQVFYDGL----GVVPKFEDMVYYGGVCSYNRY-QCGEDEENVLNWQRSIKK------ 263

Query: 181 HDKEKEKKLDLSLHL 186
            DKEKE+KLDLSLHL
Sbjct: 275 -DKEKEQKLDLSLHL 263

[Close]

BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1ETH7 (protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.8e-41
Identity = 115/195 (58.97%), Postives = 135/195 (69.23%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           MEDEE+  QV ESS+ EM  EE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKA
Sbjct: 1   MEDEEQPLQVAESSSVEM--EETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKA 60

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFP 120
           KR+SDY+ ++  S S      P  +FA +    H  + P P+YI     AAH ++ HCFP
Sbjct: 61  KRLSDYSSSSSSSLS----SRPLSVFAGNQQLHHPAILPHPVYI-----AAHGANLHCFP 120

Query: 121 NN-QMLCDGLGAAIGAAPKFENMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRID 180
           NN Q+  DGL    G  PKFE+MVYYG     +RY Q GEDE +VLNWQRS+KK      
Sbjct: 121 NNQQVFYDGL----GVVPKFEDMVYYGGVCSYNRY-QCGEDEDHVLNWQRSIKK------ 172

Query: 181 HDKEKEKKLDLSLHL 186
            DKEKE+KLDLSLHL
Sbjct: 181 -DKEKEQKLDLSLHL 172

[Close]

BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A0A0LE19 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 104/174 (59.77%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 21  EEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPP 80
           EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DY+     SP  P P 
Sbjct: 2   EEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYS----VSPPSPFPA 61

Query: 81  PPPPIFAAS----HTGLWPPPMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFE 140
           P   +FAAS    H GL P P+YI     A H ++ HCFPNNQ L             +E
Sbjct: 62  PTSLVFAASQQQHHPGLLPHPVYI-----ATHGANLHCFPNNQQLL------------YE 121

Query: 141 NMVYYG-----SRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL 186
           NMV+ G     +RY Q   DE+N+LNW+R++KK++SRI+HDKEKE+KLDLSLHL
Sbjct: 122 NMVFCGGVCPSNRYHQ---DEENLLNWERNIKKDLSRINHDKEKEQKLDLSLHL 151

[Close]

BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A1S3BIU8 (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 5.6e-37
Identity = 109/201 (54.23%), Postives = 133/201 (66.17%), Query Frame = 0


Query: 1   MEDEEKVSQVG--ESSNFE-----MEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           ME EE +S+V   E++N +     +E EE PSRVFPCLFCSRKFQSSQALGGHQNAHKKE
Sbjct: 1   MEYEESLSKVVEIETNNNDIVEKVLEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60

Query: 61  RTAARKAKRISDYAPTNFPSPSPPPP--PPPPPIFAASH-----TGLWPPPMYIAAAAAA 120
           RTAARKAKRI DY      S SPP P   P   +FAAS       GL P P+YI     A
Sbjct: 61  RTAARKAKRICDY------SVSPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYI-----A 120

Query: 121 AHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGS--RYQQFGEDEQNVLNWQRSMKK 180
            H ++ HCFPNNQ L             +ENMV+ G      ++ +DE+N+LNW+R++K 
Sbjct: 121 THGANLHCFPNNQQLL------------YENMVFCGGVCSSNRYHQDEENLLNWERNIKN 178

Query: 181 NVSRIDHDKEKEKKLDLSLHL 186
           ++SRI+HDKEKE+KLDLSLHL
Sbjct: 181 DLSRINHDKEKEQKLDLSLHL 178

[Close]

BLAST of MS017602 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 71.2 bits (173), Expect = 9.6e-13
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 7   VSQVGESSNFEMEQEEIPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 64
           +S   ESSN E +Q++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Sbjct: 61  LSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of MS017602 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 65/188 (34.57%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 1   MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 60
           +E EE++    E++  +     +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+A
Sbjct: 10  VEGEEEIKPSKEANKTDENTSSL--RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRA 69

Query: 61  KRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPN--- 120
           KR  D+   N    +        P+F +S     P   ++      A AS   CFP    
Sbjct: 70  KRAYDFVNNNDFLHT-------LPVFLSS-----PSQHHLTILGYPASAS-VACFPTVHP 129

Query: 121 NQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEK 180
           +  +    G+ +  A   +     G    Q   D          +  + + ++ DK K++
Sbjct: 130 DHPIFKSSGSHVVLATSHQGRDCKGGYCCQQRVD---------ILDHHYNVVNSDKGKDQ 173

Query: 181 KLDLSLHL 186
            LDLSLHL
Sbjct: 190 CLDLSLHL 173

[Close]

BLAST of MS017602 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 )

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-09
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 26 RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 64
          RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREL 87

[Close]

BLAST of MS017602 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 22 EIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKA 61
          E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A
Sbjct: 53 EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRA 91

[Close]

BLAST of MS017602 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 6  KVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK 60
          K     +  +F         R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Sbjct: 16 KTRSSSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

The following BLAST results are available for this feature:

BLAST of MS017602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159689.1	8.5e-96	98.92	protein LATE FLOWERING [Momordica charantia]	[more]
XP_038888938.1	7.8e-49	62.37	protein LATE FLOWERING [Benincasa hispida]	[more]
XP_022996351.1	1.2e-41	59.49	protein LATE FLOWERING-like [Cucurbita maxima]	[more]
KAG6606329.1	2.0e-41	59.49	Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036...	[more]
XP_023532770.1	4.6e-41	58.97	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS017602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39263	1.3e-11	60.00	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q9FKA9	2.3e-11	34.57	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39261	6.9e-08	68.42	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]
Q9FFX4	9.0e-08	50.00	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q39266	9.0e-08	69.23	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]

BLAST of MS017602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E329	4.1e-96	98.92	protein LATE FLOWERING OS=Momordica charantia OX=3673 GN=LOC111026032 PE=4 SV=1	[more]
A0A6J1K4H5	5.8e-42	59.49	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=...	[more]
A0A6J1ETH7	3.8e-41	58.97	protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1	[more]
A0A0A0LE19	1.8e-38	59.77	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 P...	[more]
A0A1S3BIU8	5.6e-37	54.23	protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1	[more]

BLAST of MS017602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66140.1	9.6e-13	60.00	zinc finger protein 4	[more]
AT5G48890.1	1.6e-12	34.57	C2H2-like zinc finger protein	[more]
AT5G57520.1	4.9e-09	68.42	zinc finger protein 2	[more]
AT1G24625.1	6.4e-09	69.23	zinc finger protein 7	[more]
AT5G14010.1	6.4e-09	50.00	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 8..71 e-value: 1.2E-6 score: 30.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45730:SF80	PROTEIN LATE FLOWERING	coord: 18..185
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 18..185
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 30..50
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 28..55 score: 10.969637
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 25..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017602.1	MS017602.1	mRNA