MS017595 (gene) Bitter gourd (TR) v1

Overview


Name	MS017595
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U6 snRNA-associated Sm-like protein LSm5
Location	scaffold373: 802801 .. 804832 (+)
RNA-Seq Expression	MS017595
Synteny	MS017595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACAATCCTTCACAGCTACTCCCCTCGGGTTCGCCTCTGCTTCTTCTTCGCCTTATTTGTCGTTTCCCCCTCTATTTTCGCACCAAATGAACTATCGTTTACTGGGTTTCTTGGTGGGAATTTGCAGAGTTAATCGACCGATGTATAGGGTCCAAAATATGGGTCATTATGAAAGGCGACAAGGAGCTCGTGGGTACTCTCAGGGGATTCGATGTTTATGTCAACATGGTTCTCGAAGACGTCACTGAATAGTAAGGGCCTCTCTCAGAATTGCAAGATCTGAACTCGTGTTTCCTTGTTTTCTCATTTGGTTGTGTATGTTTTATGTTTCGCATGATTTGTTTTGTTTCAGTGTTGGAGAATTTGAGGTGAATTGTTGGAAGAAGTAGGGTTAATGTTGTATTTGTCCGTCTTTTTGCGACTGAAAACATAGTTTAAGCGAGAGAGGAGACTGCGCTGGAGCAATTTGAATTATTGATATTGCAATTCCGTTTTGTTCCCTCTGTTATTCTCCAATCTTAGGAGAGGTTGCCTTTGGAAAGCTTTTGAGTTAGGGTTTAGAAACCCCTTTGTTCAGAAGTTGAAGAAGGTGATTCCTAATCTCAAGTTATATTAGGGTATGTTTCGGAGTGATTTTTGCTATCATTTGTATTTCATTGTCAAACATTAGGGCATATTTAAAAGTAATTTTGACATGATTAAATTCACTTTTGTCATTGTCATAATCAATTTCATTTAAAATAATAATGTTTGACAATGATATACAACTACACAAGTGATTCCAAAAAATGGCAAAAGTGCCAAAATCGCTCCTAAACATGCCATAACATAGAGGGAAAAAGTTTGTGAGAGAGGAGGATTACCATATGCATTCTGCTGACATTTCATTAAACAAAGTATTCCTATTCATGGTGGAAATAGTATAGTGGTAGAAAGAGAAGATTACCATTTACATTTCCTGTTCACTGGAAATCTCAAGTAACATAGAAGGAAAGAGTTGGTTTAAGTGTCGAGAAGTACTGCAGGAGGAAAAAAAGTAGCAGTTTCCATACTGCCATTTTGATCGTTTTATTTCTCTTAGTCTGTTTTCTTGCACTTGTTCACATGCATACACCTTTATCTGCTTATTATTGGTTTTTTACTTTCAATTGTTGATTCCTGACAAATCGGGGGCCAGTGACCATGCTTTGTGTCACTGCTCAATTCTACATATGGGATAGAAAGAACAAGCTAACAAGTTAAGACAGGATATGTCATATTTACTGTGATCGTCTTTCCCTTTTTCAAGTTGTAGAGCTAACAGATTATTACTCACTTTTCTCTCTGTGGTCTGCTTATGAATAATAGATGGATAAGCTCATAGTTAGGCTTCAAATTCTGAACAAGATGCTGTTTAATTAACTCATCATTATGACTATGCTTTCATGTGATGTAAGATGTAACTTCTTTTTTCTTATCAAATGTTTAAAAATTGACTTGGATTATTACTAGTTCATGGCAACAGGAAATGAATAATGTTTTGGCAAGAGCACTAGGAGTAATATGAAATTTGTTAAATTGTCTCTACTTCGACATTGGATTGAACCTTTTATTGATTTTTCTAATTTAATTTACTCACGATTCAAGCCTTCTGTAGAACTTGTTCTAGTTAATTTATTATGTTTCGGCTGTTAATTTGGCTATTGAAACAGTAAAAAATTCATACTCCTTTGGTTTTATGATGCTCCATAAAGTGATAAAGTTGCTCCTAAATTAACCAACATGTGATCAATCAGAATCTAGGATGTGTTCTATTGTCTCTAAATTTCCTTCCCCCACACACCTTTTGTATGCCCATGTGTGTAGTTTGCAGTCTTTTATACAAACCTAATGCCTCTTTGTTTGAATTAAATCTCATGGCACTCTATTCAATGTACTATATGGATTAACTATGTCTGTTACACATTGTAGTGAGATTACTGCTGAGGGAAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAATATTGCTATTGTA

mRNA sequence

ATGGCCAACAATCCTTCACAGCTACTCCCCTCGGAGTTAATCGACCGATGTATAGGGTCCAAAATATGGGTCATTATGAAAGGCGACAAGGAGCTCGTGGGTACTCTCAGGGGATTCGATGTTTATGTCAACATGGTTCTCGAAGACGTCACTGAATATGAGATTACTGCTGAGGGAAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAATATTGCTATTGTA

Coding sequence (CDS)

ATGGCCAACAATCCTTCACAGCTACTCCCCTCGGAGTTAATCGACCGATGTATAGGGTCCAAAATATGGGTCATTATGAAAGGCGACAAGGAGCTCGTGGGTACTCTCAGGGGATTCGATGTTTATGTCAACATGGTTCTCGAAGACGTCACTGAATATGAGATTACTGCTGAGGGAAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAATATTGCTATTGTA

Protein sequence

MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIV

Homology

[Close]

BLAST of MS017595 vs. NCBI nr
Match: KYP49644.1 (U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAIV
Sbjct: 61 RITKLDQILLNGNNIAIV 78

[Close]

BLAST of MS017595 vs. NCBI nr
Match: PON51961.1 (LSM domain/archaea-type [Parasponia andersonii])

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAIV
Sbjct: 61 RITKLDQILLNGNNIAIV 78

[Close]

BLAST of MS017595 vs. NCBI nr
Match: XP_004504703.1 (sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jatropha curcas] >XP_013457335.1 sm-like protein LSM5 [Medicago truncatula] >XP_015575945.1 sm-like protein LSM5 [Ricinus communis] >XP_015957485.1 sm-like protein LSM5 [Arachis duranensis] >XP_016190536.1 sm-like protein LSM5 [Arachis ipaensis] >XP_016708763.1 sm-like protein LSM5 [Gossypium hirsutum] >XP_017648195.1 PREDICTED: sm-like protein LSM5 [Gossypium arboreum] >XP_017970003.1 PREDICTED: sm-like protein LSM5 [Theobroma cacao] >XP_021274360.1 sm-like protein LSM5 [Herrania umbratica] >XP_021631942.1 sm-like protein LSM5 [Manihot esculenta] >XP_021683952.1 sm-like protein LSM5 [Hevea brasiliensis] >XP_022159125.1 sm-like protein LSM5 [Momordica charantia] >XP_022758624.1 sm-like protein LSM5 [Durio zibethinus] >XP_022930959.1 sm-like protein LSM5 [Cucurbita moschata] >XP_022995599.1 sm-like protein LSM5 [Cucurbita maxima] >XP_023532583.1 sm-like protein LSM5 [Cucurbita pepo subsp. pepo] >XP_023923008.1 sm-like protein LSM5 [Quercus suber] >XP_023923009.1 sm-like protein LSM5 [Quercus suber] >XP_023923155.1 sm-like protein LSM5 [Quercus suber] >XP_025639691.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639692.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025691321.1 sm-like protein LSM5 [Arachis hypogaea] >XP_027348492.1 sm-like protein LSM5 [Abrus precatorius] >XP_030933673.1 sm-like protein LSM5 [Quercus lobata] >XP_030933674.1 sm-like protein LSM5 [Quercus lobata] >XP_030936832.1 sm-like protein LSM5 [Quercus lobata] >XP_038681479.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038681480.1 sm-like protein LSM5 [Tripterygium wilfordii] >XP_038724027.1 sm-like protein LSM5 isoform X2 [Tripterygium wilfordii] >XP_038887865.1 sm-like protein LSM5 [Benincasa hispida] >XP_039005698.1 sm-like protein LSM5 [Hibiscus syriacus] >XP_039031317.1 sm-like protein LSM5 [Hibiscus syriacus] >KAB2057077.1 hypothetical protein ES319_A11G146100v1 [Gossypium barbadense] >KAF3966647.1 hypothetical protein CMV_009271 [Castanea mollissima] >KAG6606325.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. sororia] >OMO51904.1 hypothetical protein COLO4_37469 [Corchorus olitorius] >OMO99889.1 hypothetical protein CCACVL1_03561 [Corchorus capsularis] >TYG94013.1 hypothetical protein ES288_A11G155800v1 [Gossypium darwinii] >TYI00748.1 hypothetical protein ES332_A11G155300v1 [Gossypium tomentosum] >TYJ09550.1 hypothetical protein E1A91_A11G149100v1 [Gossypium mustelinum] >GAU40652.1 hypothetical protein TSUD_83300 [Trifolium subterraneum])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. NCBI nr
Match: XP_039025038.1 (sm-like protein LSM5 [Hibiscus syriacus] >XP_039025039.1 sm-like protein LSM5 [Hibiscus syriacus] >KAE8681740.1 U6 snRNA-associated Sm-like protein LSm5 [Hibiscus syriacus])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. NCBI nr
Match: XP_030496217.1 (sm-like protein LSM5 [Cannabis sativa] >XP_030496220.1 sm-like protein LSM5 [Cannabis sativa] >PON65323.1 LSM domain/archaea-type [Trema orientale] >RDY13010.1 Sm-like protein LSM5 [Mucuna pruriens] >TKY59618.1 Sm protein LSM5 [Spatholobus suberectus])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. ExPASy Swiss-Prot
Match: Q9FKB0 (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.7e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. ExPASy Swiss-Prot
Match: Q2HJH0 (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of MS017595 vs. ExPASy Swiss-Prot
Match: Q9Y4Y9 (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of MS017595 vs. ExPASy Swiss-Prot
Match: P62322 (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of MS017595 vs. ExPASy Swiss-Prot
Match: Q5R628 (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAIV 79
          KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITML 82

[Close]

BLAST of MS017595 vs. ExPASy TrEMBL
Match: A0A151S4E6 (U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAIV
Sbjct: 61 RITKLDQILLNGNNIAIV 78

[Close]

BLAST of MS017595 vs. ExPASy TrEMBL
Match: A0A2P5BT44 (U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAIV
Sbjct: 61 RITKLDQILLNGNNIAIV 78

[Close]

BLAST of MS017595 vs. ExPASy TrEMBL
Match: A0A0B0NQ45 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC108488428 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. ExPASy TrEMBL
Match: A0A2P5WT65 (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. ExPASy TrEMBL
Match: A0A0B2RAJ5 (U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          RITKLDQILLNGNNIAI+
Sbjct: 61 RITKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 153.7 bits (387), Expect = 6.2e-38
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAIV 79
          R+TKLDQILLNGNNIAI+
Sbjct: 61 RVTKLDQILLNGNNIAIL 78

[Close]

BLAST of MS017595 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of MS017595 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.1e-06
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 69
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 72

Query: 70 DQILLNGNNIAIV 79
           +ILL G+NI ++
Sbjct: 73 GRILLKGDNITLM 83

[Close]

BLAST of MS017595 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIV 79
          L   ++ G N+ ++
Sbjct: 66 LGLYVIRGENVVLI 79

[Close]

BLAST of MS017595 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 5  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 64
          P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6  PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 65 LDQILLNGNNIAIV 79
          L   ++ G N+ ++
Sbjct: 66 LGLYVIRGENVVLI 79

The following BLAST results are available for this feature:

BLAST of MS017595 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP49644.1	2.1e-35	100.00	U6 snRNA-associated Sm-like protein LSm5 [Cajanus cajan]	[more]
PON51961.1	2.1e-35	100.00	LSM domain/archaea-type [Parasponia andersonii]	[more]
XP_004504703.1	4.6e-35	98.72	sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jat...	[more]
XP_039025038.1	4.6e-35	98.72	sm-like protein LSM5 [Hibiscus syriacus] >XP_039025039.1 sm-like protein LSM5 [H...	[more]
XP_030496217.1	4.6e-35	98.72	sm-like protein LSM5 [Cannabis sativa] >XP_030496220.1 sm-like protein LSM5 [Can...	[more]

BLAST of MS017595 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKB0	8.7e-37	94.87	Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1	[more]
Q2HJH0	5.6e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3	[more]
Q9Y4Y9	5.6e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV...	[more]
P62322	5.6e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S...	[more]
Q5R628	5.6e-28	77.33	U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV...	[more]

BLAST of MS017595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151S4E6	1.0e-35	100.00	U6 snRNA-associated Sm-like protein LSm5 OS=Cajanus cajan OX=3821 GN=LSM5 PE=3 S...	[more]
A0A2P5BT44	1.0e-35	100.00	U6 snRNA-associated Sm-like protein LSm5 OS=Parasponia andersonii OX=3476 GN=LSM...	[more]
A0A0B0NQ45	2.2e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=LOC10...	[more]
A0A2P5WT65	2.2e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium barbadense OX=3634 GN=LSM5...	[more]
A0A0B2RAJ5	2.2e-35	98.72	U6 snRNA-associated Sm-like protein LSm5 OS=Glycine soja OX=3848 GN=LSM5 PE=3 SV...	[more]

BLAST of MS017595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48870.1	6.2e-38	94.87	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	6.2e-06	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	8.1e-06	36.99	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	1.2e-04	28.38	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	1.2e-04	28.38	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 12..78 e-value: 1.0E-15 score: 68.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 13..78 e-value: 4.1E-20 score: 71.2
None	No IPR available	GENE3D	2.30.30.100		coord: 9..78 e-value: 3.9E-25 score: 89.4
None	No IPR available	PANTHER	PTHR20971:SF4	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5	coord: 1..78
IPR033871	Sm-like protein LSm5	PANTHER	PTHR20971	U6 SNRNA-ASSOCIATED PROTEIN	coord: 1..78
IPR033871	Sm-like protein LSm5	CDD	cd01732	LSm5	coord: 7..77 e-value: 3.43621E-46 score: 140.072
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017595.1	MS017595.1	mRNA