MS017581 (gene) Bitter gourd (TR) v1

Overview
NameMS017581
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPPPDE domain-containing protein
Locationscaffold373: 735389 .. 735499 (-)
RNA-Seq ExpressionMS017581
SyntenyMS017581
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACACAAGCAGGAGTCTCACAGGGTTGTGTTGAATCTGTATGACCTCAGCCGCGGATTGGCTCGACAGTTCTCCGCGACATTGTTAGGGAAACCCATGGAAGGAATATGG

mRNA sequence

CAACACAAGCAGGAGTCTCACAGGGTTGTGTTGAATCTGTATGACCTCAGCCGCGGATTGGCTCGACAGTTCTCCGCGACATTGTTAGGGAAACCCATGGAAGGAATATGG

Coding sequence (CDS)

CAACACAAGCAGGAGTCTCACAGGGTTGTGTTGAATCTGTATGACCTCAGCCGCGGATTGGCTCGACAGTTCTCCGCGACATTGTTAGGGAAACCCATGGAAGGAATATGG

Protein sequence

QHKQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW
Homology
BLAST of MS017581 vs. NCBI nr
Match: XP_022156051.1 (desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156057.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156064.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156068.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          +ESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW
Sbjct: 3  EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 36

BLAST of MS017581 vs. NCBI nr
Match: XP_022156073.1 (desumoylating isopeptidase 1 isoform X2 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          +ESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW
Sbjct: 3  EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 36

BLAST of MS017581 vs. NCBI nr
Match: XP_038887396.1 (desumoylating isopeptidase 1 [Benincasa hispida] >XP_038887397.1 desumoylating isopeptidase 1 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 3  KQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          ++ESHRVVLNLYDLS GLARQFS  LLGKP+EGIW
Sbjct: 3  EEESHRVVLNLYDLSCGLARQFSKPLLGKPIEGIW 37

BLAST of MS017581 vs. NCBI nr
Match: XP_004144380.1 (desumoylating isopeptidase 1 [Cucumis sativus] >XP_031739487.1 desumoylating isopeptidase 1 [Cucumis sativus] >XP_031739488.1 desumoylating isopeptidase 1 [Cucumis sativus] >XP_031739489.1 desumoylating isopeptidase 1 [Cucumis sativus] >KGN58360.1 hypothetical protein Csa_001706 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 3  KQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          ++ESHRVVLNLYDLS GLARQFS  LLGK +EGIW
Sbjct: 3  EEESHRVVLNLYDLSCGLARQFSTALLGKAIEGIW 37

BLAST of MS017581 vs. NCBI nr
Match: KAG7011326.1 (Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGI 37
          +ESHRVVLNLYDLSRG ARQFS TLLGKP++GI
Sbjct: 11 KESHRVVLNLYDLSRGSARQFSTTLLGKPIKGI 43

BLAST of MS017581 vs. ExPASy Swiss-Prot
Match: Q6GLM5 (Desumoylating isopeptidase 1 OS=Xenopus laevis OX=8355 GN=desi1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 2.7e-04
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 0

Query: 7  HRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          H V L +YD+SRGLAR+ S  +LGK +EGIW
Sbjct: 8  HLVRLYVYDMSRGLARRLSPVMLGKQLEGIW 38

BLAST of MS017581 vs. ExPASy TrEMBL
Match: A0A6J1DPL4 (desumoylating isopeptidase 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023019 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          +ESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW
Sbjct: 3  EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 36

BLAST of MS017581 vs. ExPASy TrEMBL
Match: A0A6J1DPL9 (desumoylating isopeptidase 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023019 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          +ESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW
Sbjct: 3  EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 36

BLAST of MS017581 vs. ExPASy TrEMBL
Match: A0A0A0L8S4 (PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G627710 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 3  KQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          ++ESHRVVLNLYDLS GLARQFS  LLGK +EGIW
Sbjct: 3  EEESHRVVLNLYDLSCGLARQFSTALLGKAIEGIW 37

BLAST of MS017581 vs. ExPASy TrEMBL
Match: A0A1S3CMZ0 (desumoylating isopeptidase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502756 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 3  KQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          ++ESHRVVLNLYDLS GLARQFS  L+GK +EGIW
Sbjct: 3  EEESHRVVLNLYDLSCGLARQFSTALMGKAIEGIW 37

BLAST of MS017581 vs. ExPASy TrEMBL
Match: A0A5D3BEH4 (DeSI-like protein sdu1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00170 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 3  KQESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          ++ESHRVVLNLYDLS GLARQFS  L+GK +EGIW
Sbjct: 41 EEESHRVVLNLYDLSCGLARQFSTALMGKAIEGIW 75

BLAST of MS017581 vs. TAIR 10
Match: AT3G07090.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-08
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 4  QESHRVVLNLYDLSRGLARQFSATLLGKPMEGIW 38
          +E+H+V LN+YDLS+GLARQ S +LLGK +EG+W
Sbjct: 3  EEAHKVTLNVYDLSQGLARQLSQSLLGKVIEGVW 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156051.11.2e-0997.06desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156057.1 de... [more]
XP_022156073.11.2e-0997.06desumoylating isopeptidase 1 isoform X2 [Momordica charantia][more]
XP_038887396.14.3e-0782.86desumoylating isopeptidase 1 [Benincasa hispida] >XP_038887397.1 desumoylating i... [more]
XP_004144380.12.1e-0680.00desumoylating isopeptidase 1 [Cucumis sativus] >XP_031739487.1 desumoylating iso... [more]
KAG7011326.13.6e-0684.85Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
Match NameE-valueIdentityDescription
Q6GLM52.7e-0461.29Desumoylating isopeptidase 1 OS=Xenopus laevis OX=8355 GN=desi1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DPL45.8e-1097.06desumoylating isopeptidase 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1DPL95.8e-1097.06desumoylating isopeptidase 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0A0L8S41.0e-0680.00PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G627710 PE=3 ... [more]
A0A1S3CMZ01.8e-0677.14desumoylating isopeptidase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A5D3BEH41.8e-0677.14DeSI-like protein sdu1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
AT3G07090.12.4e-0864.71PPPDE putative thiol peptidase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042266PPPDE peptidase domain superfamilyGENE3D3.90.1720.30PPPDE domainscoord: 2..37
e-value: 1.8E-6
score: 29.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017581.1MS017581.1mRNA