MS017541 (gene) Bitter gourd (TR) v1

Overview


Name	MS017541
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L35
Location	scaffold373: 436380 .. 439265 (-)
RNA-Seq Expression	MS017541
Synteny	MS017541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGGTGGTGCGCGAAGCTCCGATCTGCGGCGGCGAAACCATCTCAACTCGTACATTCCGTTTCCTCCACCCGCAGGATCTTTCACTCTTCTCCATCACTGTACCAGCCTCTCCATTTCGCTCCGAATAATTTGAGTTCCAGGTCCATTTTCAATGCATCTCTACAGACGCACTCTTCGCTCGCGGCTTACCAGTGTATTCGATCTTCACTCCTACCTCTCTCCGTAAGTCTAGTTTCGTATTCTCTCGTTGATTTTGTTTGGTATATTGAGAAATTTCTAGTTATATCTTGGATTAGCGAGGAATGCTTGGAAGGTAAGGGTACCGCTTGATTTTTAGCTGATGAAAGGAATTATTTAGGAAAAATTGGCTCAGTGAAGCCTATATTATTATTTCTTTTGATTCCGTTTGCTCCATTTGCTATAAAACGATGTTCCGTTACAATGAATTAAGGTTGTTCAAGTGCGGCATGTTTCGTCAAGAGAGCGACGGAAGAGGAGAAAGCCGATGACGCCAGTCACTTCCAAATTGAAGAAAACTAAGATGAAATTTTACTCGTATGTTCATGTAATTGGTATTGCTATTTATTTTTTCTTTTTTGGCTGTTCATAATTTCTGTCCTGCAAGTTTGTGAGTAAATAACACTTTTAAGTTTTTCGATCAGTTCTTACAAGTCTAGGTTCTGGATGATGAAGGATGGGAGCATTAAACGTCGAAAGGAGGGGAAAAGGCACAATGCACATTTGAAGGTTTGTCTTTCTGTTTATCAAATGTGCTCCTTGGTTTAGAATCATACTAGCGTATAAATGTAAATATTTGGAGGGCAGAGATGAGCGATGCCAGGTGAATTGAGTATGCGTGGAATAATTGCTTTCCTGGTATATTATACATTCTTTTATTGTTTAGAGTTGCACCACAGAAGTAGAATGATTGAGTCTTTGGATCCTGGTGTTACTTTTAAATTTTTTCAAATGTTTTTAGAAAACAAATTAGCTGAACTTTGGCTATTTTTGTTACGTACTTTAAATTATTGTAATATATGCCCCTGTTGATTACATAAAGCTAAGTTTAGTTCTCAGCCTGGATGTTTAAATTATAGCACTTCTTTAATTGATAATGCACTGCATCTTCTTTTGTGAATATTGTTTCCTTCATCTTAATCTAGTGTATCTTCTACTAGCTTTCCAAGACGATTTTGAGAAATTACTCTCCATTTTCATTCCACAACTCCCATTCTTAGGCTACGACCATTGGATGCACATTTCTGGCTACTTTTAGAAATTTTGGCTTCTTTCTGCTAGTAATCTTCAAGTATTAGCCTCTGTATTTCACATATGAATACGATGCACAAAAGTCTCCAAGTTCTTTTCTTGTTTAGACTTGTGCCATAGGCATTAGAAGATTGAACCTTTTATCCTGGGACTTCTTTCAAGTTTCCGGAAAGGTTTCTCAAAAGAAATATATTTGCCCTTTTGGCTATGCCTATTCTTCATTATGTACATAGCTTTTCAGAATATTTGCTCATATCAATGCAGCTTAACTAACTTTTTAGTTTCCAGCTTTGGATGTTTAAATTGTTGCGCACATTCAATTGGTGGTTTATTTCGAAATTTTTGTTTCTTTATTTGTGAGGTGATTTGAAGAGAATTTTTTGAATGAATATCAGTAATCTCCAAACTTCCTCCCAAGAATCCTTCCCTATTTCGAAACGCCCTTCCATTCCTTTCCAATAAAATGTTGTGCAGAACGCCAAAAATTGCAACCTGCTGTAAACCTTCTCCAAAGGGAGATGAAAGAGGACCTCATAGAAGAGAGCAACAATCACAATTAAGAGCTGGTAGTGGAAGGATGAACACCATGGATGTCATATAGGGGACTTTCACTTTCCCTTTCCTTGAAGTGGTGTTCTTTGTAGAAAGGCATTAGAATCATATCCTGCTTGTAACGTCCAAATATTAGCTATATAGCTGTATGTCATATACAGCGTGAAAATTTCTCCCATCTGGCTCCCATGAACCCAGTCGTGATGCTACTGCATTTTTCTATTTATTGGAAGTCCATGACACAAGTTAATTTAGGCTAAACTCTTAACTTCCTGTGATGCCAATAAACCTATTCTGTTTAGTTAAGACTTTGGATGTCAATACATGCTATGATCCTTCCTTTAAGCTTGCAAACTGAGTGTTTTCATTTTATTCCTAAAGTTATCATCCAGCATAATATGTCCATCACTGACTCCATCCCTAGAAGTGATTATTAGCTAGCTCACTGCGTATCAGTAATGGAAGAAGCAGAGTGATACCCCTGCTTGTCAGTTTCTCTCTGTATGGGGCTGCCTATGGTTTTTCTTTATGATATCTCACGTGAAAAGTCTTGTGTATCTAGATATAACTTTTAAAAAGATAAAAGACATTGTGCATTTTGTGGAGGCAGGAATCAATGTTTATGTGTATGGAAAACTTTTAGAACGCTTGTGAATGTAGATTCAAGTTTTAGTAGTCACCTACCTAAGATATTAATATTAAGACATTGTGCATTCCATGCTCCTTGCTCTTCGCCCCTTGATTCTGTTAAAGACATTGTACGTTCGATGCTCCTTGCAATTTGCCCCTTGATTCTGTTCCATTTCGATTTTTTATGCATGCTTCATGCTCAGGTACCTCAGTTCATGCTTCAACTTTATGTTGGCATTGTTATGTTCTTATTTAGCCAATACAAAATGCACATCTGTAAAAATTGTTATATCAAACTCTTTGAAATTAACTTTTTTTTTTTTTTTTTTAAATTCAATGCAGTCCAAGAAATCAAAACGTAGACTGAGACAACCTGCCACTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGA

mRNA sequence

ATGCTCCGGTGGTGCGCGAAGCTCCGATCTGCGGCGGCGAAACCATCTCAACTCGTACATTCCGTTTCCTCCACCCGCAGGATCTTTCACTCTTCTCCATCACTGTACCAGCCTCTCCATTTCGCTCCGAATAATTTGAGTTCCAGGTCCATTTTCAATGCATCTCTACAGACGCACTCTTCGCTCGCGGCTTACCAGTGTATTCGATCTTCACTCCTACCTCTCTCCGTTGTTCAAGTGCGGCATGTTTCGTCAAGAGAGCGACGGAAGAGGAGAAAGCCGATGACGCCAGTCACTTCCAAATTGAAGAAAACTAAGATGAAATTTTACTCTTCTTACAAGTCTAGGTTCTGGATGATGAAGGATGGGAGCATTAAACGTCGAAAGGAGGGGAAAAGGCACAATGCACATTTGAAGTCCAAGAAATCAAAACGTAGACTGAGACAACCTGCCACTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGA

Coding sequence (CDS)

ATGCTCCGGTGGTGCGCGAAGCTCCGATCTGCGGCGGCGAAACCATCTCAACTCGTACATTCCGTTTCCTCCACCCGCAGGATCTTTCACTCTTCTCCATCACTGTACCAGCCTCTCCATTTCGCTCCGAATAATTTGAGTTCCAGGTCCATTTTCAATGCATCTCTACAGACGCACTCTTCGCTCGCGGCTTACCAGTGTATTCGATCTTCACTCCTACCTCTCTCCGTTGTTCAAGTGCGGCATGTTTCGTCAAGAGAGCGACGGAAGAGGAGAAAGCCGATGACGCCAGTCACTTCCAAATTGAAGAAAACTAAGATGAAATTTTACTCTTCTTACAAGTCTAGGTTCTGGATGATGAAGGATGGGAGCATTAAACGTCGAAAGGAGGGGAAAAGGCACAATGCACATTTGAAGTCCAAGAAATCAAAACGTAGACTGAGACAACCTGCCACTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGA

Protein sequence

MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHSSLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMMKDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG

Homology

[Close]

BLAST of MS017541 vs. NCBI nr
Match: XP_022156090.1 (uncharacterized protein LOC111023059 [Momordica charantia])

HSP 1 Score: 317.0 bits (811), Expect = 9.7e-83
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSS LPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM
Sbjct: 61  SLAAYQCIRSSPLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. NCBI nr
Match: XP_022996248.1 (uncharacterized protein LOC111491530 [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 8.0e-77
Identity = 154/168 (91.67%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSVPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSSL PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+KFYSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKFYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQPATVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. NCBI nr
Match: XP_023532529.1 (uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSSL PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQPATVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. NCBI nr
Match: XP_022931031.1 (uncharacterized protein LOC111437349 [Cucurbita moschata] >KAG6606284.1 hypothetical protein SDJN03_03601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293.9 bits (751), Expect = 8.8e-76
Identity = 152/168 (90.48%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSSL PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. NCBI nr
Match: KAG7036224.1 (hypothetical protein SDJN02_03026 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 151/168 (89.88%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRS L PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSPLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. ExPASy TrEMBL
Match: A0A6J1DPB8 (uncharacterized protein LOC111023059 OS=Momordica charantia OX=3673 GN=LOC111023059 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSS LPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM
Sbjct: 61  SLAAYQCIRSSPLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. ExPASy TrEMBL
Match: A0A6J1KAA4 (uncharacterized protein LOC111491530 OS=Cucurbita maxima OX=3661 GN=LOC111491530 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.9e-77
Identity = 154/168 (91.67%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSVPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSSL PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+KFYSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKFYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQPATVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPATVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. ExPASy TrEMBL
Match: A0A6J1ESK5 (uncharacterized protein LOC111437349 OS=Cucurbita moschata OX=3662 GN=LOC111437349 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.3e-76
Identity = 152/168 (90.48%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWC+KLRSAAAKPSQ+VHSVSSTRRIFHS+PSLYQPLHF+PNNLSSRS+ NASLQTHS
Sbjct: 1   MLRWCSKLRSAAAKPSQIVHSVSSTRRIFHSAPSLYQPLHFSPNNLSSRSLLNASLQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
           SLAAYQCIRSSL PL  VQVRHVSSRER+KRRKPMTPVTSKLKKTK+K YSSYKSRFW+ 
Sbjct: 61  SLAAYQCIRSSLSPLYAVQVRHVSSRERKKRRKPMTPVTSKLKKTKIKCYSSYKSRFWVR 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFCG 169
           KDGSIKRRKEGKRHNAHLKSKK+KRRLRQP TVPLAYAKVMKKLNFCG
Sbjct: 121 KDGSIKRRKEGKRHNAHLKSKKAKRRLRQPGTVPLAYAKVMKKLNFCG 168

[Close]

BLAST of MS017541 vs. ExPASy TrEMBL
Match: A0A1S3CDR4 (uncharacterized protein LOC103499252 OS=Cucumis melo OX=3656 GN=LOC103499252 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 144/167 (86.23%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLRWCAKLRSAAAKPSQ+V SVSSTRRIFHS+PSLYQPLHF+PNNL+SRS+FNA  QTHS
Sbjct: 1   MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
            LAAYQCIRSSLLPLSVVQVRHVSSR+RR +RKP TP TSKLKKTK+K YSSYKSRFW+M
Sbjct: 61  PLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 165

[Close]

BLAST of MS017541 vs. ExPASy TrEMBL
Match: A0A0A0LBT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638010 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.5e-68
Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQLVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTHS 60
           MLR CAKLRSAAAKPSQ+++SVSSTRRIFHS+PSLYQPLHF+ NNL+SRS+FNAS QTHS
Sbjct: 1   MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHS 60

Query: 61  SLAAYQCIRSSLLPLSVVQVRHVSSRERRKRRKPMTPVTSKLKKTKMKFYSSYKSRFWMM 120
            LAAYQCIRSS LPLSVVQVRHVSSR+RR +RKP TP TSKLKKTK+K YSSYKSRFW+M
Sbjct: 61  PLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSSYKSRFWLM 120

Query: 121 KDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFC 168
           KDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Sbjct: 121 KDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC 167

[Close]

BLAST of MS017541 vs. TAIR 10
Match: AT5G45590.1 (Ribosomal protein L35 )

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-29
Identity = 80/172 (46.51%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 1   MLRWCAKLRSAAAKPSQ-LVHSVSSTRRIFHSSPSLYQPLHFAPNNLSSRSIFNASLQTH 60
           M R+C KLRS + + ++ L    +S  R+ H SPS  + L       ++ + ++      
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGFANSTKWSFVPAAG 60

Query: 61  SSLAAYQCIRSSLLPLSVVQVRHVSSRER----RKRRKPMTPVTSKLKKTKMKFYSSYKS 120
              +    + ++ +P   VQVR+++S+E+    +K+ +P TP+TSK+KK K+KFYSS+K 
Sbjct: 61  VFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFYSSFKD 120

Query: 121 RFWMMKDGSIKRRKEGKRHNAHLKSKKSKRRLRQPATVPLAYAKVMKKLNFC 168
           RF  + DG+I+R KEGKRHNAHLKSKKSKRRLRQP  VP AYAKVMKKLNFC
Sbjct: 121 RFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLNFC 172

The following BLAST results are available for this feature:

BLAST of MS017541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156090.1	9.7e-83	99.40	uncharacterized protein LOC111023059 [Momordica charantia]	[more]
XP_022996248.1	8.0e-77	91.67	uncharacterized protein LOC111491530 [Cucurbita maxima]	[more]
XP_023532529.1	3.0e-76	91.07	uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo]	[more]
XP_022931031.1	8.8e-76	90.48	uncharacterized protein LOC111437349 [Cucurbita moschata] >KAG6606284.1 hypothet...	[more]
KAG7036224.1	3.4e-75	89.88	hypothetical protein SDJN02_03026 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS017541 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPB8	4.7e-83	99.40	uncharacterized protein LOC111023059 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1KAA4	3.9e-77	91.67	uncharacterized protein LOC111491530 OS=Cucurbita maxima OX=3661 GN=LOC111491530...	[more]
A0A6J1ESK5	4.3e-76	90.48	uncharacterized protein LOC111437349 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A1S3CDR4	2.7e-70	86.23	uncharacterized protein LOC103499252 OS=Cucumis melo OX=3656 GN=LOC103499252 PE=...	[more]
A0A0A0LBT5	1.5e-68	84.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638010 PE=4 SV=1	[more]

BLAST of MS017541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45590.1	3.0e-29	46.51	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037229	Ribosomal protein L35 superfamily	GENE3D	4.10.410.60		coord: 106..165 e-value: 2.3E-12 score: 49.3
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 106..164
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 106..164 e-value: 2.2E-12 score: 47.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..149
None	No IPR available	PANTHER	PTHR36400:SF1	RIBOSOMAL PROTEIN L35	coord: 1..167
None	No IPR available	PANTHER	PTHR36400	RIBOSOMAL PROTEIN L35	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017541.1	MS017541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome