MS017535 (gene) Bitter gourd (TR) v1

Overview
NameMS017535
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold373: 391125 .. 391376 (+)
RNA-Seq ExpressionMS017535
SyntenyMS017535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACCCAAATTCTCCTTCATTTCCATCTTCATAATTCTGCTCTGTTTCTTGGCCTTCCTCCTCTCATCAGTTGCAGCCATTGAAGAGGGCAAAGAAAGAGATTTTGCAGTGAAGAAGTTTCGAAATCCTTATAATAAATTCATGTGGGGAAGGAAGGAGAGAGTCAACCATGGAAGCTTTAGAGGTCCTAAGGGACACCTTCTTCCTCCTCATCAATATGATCAACCATTTCACTCTCAAAACATTGTTCTC

mRNA sequence

TCACCCAAATTCTCCTTCATTTCCATCTTCATAATTCTGCTCTGTTTCTTGGCCTTCCTCCTCTCATCAGTTGCAGCCATTGAAGAGGGCAAAGAAAGAGATTTTGCAGTGAAGAAGTTTCGAAATCCTTATAATAAATTCATGTGGGGAAGGAAGGAGAGAGTCAACCATGGAAGCTTTAGAGGTCCTAAGGGACACCTTCTTCCTCCTCATCAATATGATCAACCATTTCACTCTCAAAACATTGTTCTC

Coding sequence (CDS)

TCACCCAAATTCTCCTTCATTTCCATCTTCATAATTCTGCTCTGTTTCTTGGCCTTCCTCCTCTCATCAGTTGCAGCCATTGAAGAGGGCAAAGAAAGAGATTTTGCAGTGAAGAAGTTTCGAAATCCTTATAATAAATTCATGTGGGGAAGGAAGGAGAGAGTCAACCATGGAAGCTTTAGAGGTCCTAAGGGACACCTTCTTCCTCCTCATCAATATGATCAACCATTTCACTCTCAAAACATTGTTCTC

Protein sequence

SPKFSFISIFIILLCFLAFLLSSVAAIEEGKERDFAVKKFRNPYNKFMWGRKERVNHGSFRGPKGHLLPPHQYDQPFHSQNIVL
Homology
[Close]
BLAST of MS017535 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-05
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 3  KFSFISIFIILLCFLAFLLSSVAAI--EEGKERDFAVKKFRNPYNKFMWGRKERVNHGSF 62
          KFSFI IFI     LAF+  +VAA   +  K +D A K   + +++F+WGRKER+NHGSF
Sbjct: 3  KFSFILIFI-----LAFISVTVAAAIGDMSKGKDVATK--FHYHDEFIWGRKERINHGSF 62

Query: 63 RGPKGHLL----PPHQYDQ 76
          RGP  +LL    P H +DQ
Sbjct: 63 RGPDKYLLNDPHPFHPFDQ 74

[Close]
BLAST of MS017535 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 3  KFSFISIFIILLCFLAFLLSSVAAI--EEGKERDFAVKKFRNPYNKFMWGRKERVNHGSF 62
          KFSFI IFI     LAF+  +VAA   +  K +D A K   + +++F+WGRKER+NHGSF
Sbjct: 3  KFSFILIFI-----LAFISVTVAAAIGDMSKGKDVATK--FHYHDEFIWGRKERINHGSF 62

Query: 63 RGPKGHLL----PPHQYDQ 76
          RGP  +LL    P H +DQ
Sbjct: 63 RGPDKYLLNDPHPFHPFDQ 74

The following BLAST results are available for this feature:
BLAST of MS017535 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60344.14.1e-0549.37hypothetical protein Csa_002159 [Cucumis sativus][more]
BLAST of MS017535 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS017535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH372.0e-0549.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1[more]
BLAST of MS017535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017535.1MS017535.1mRNA