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MS017290 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAGATACAGTCCACCTTATCACAGCCCTCCAAGAAGAGGATATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGTGAGCATTTGGGCACTATTAATTATGAATTTGTTTGTTTTTTCTCATTGATTCTCAAGAACTTGGAAATTATGGTTATTTTGATACTTGCAGGCCAGAGGAGCTTAGAGCACCCTTTGAGAGGTTTGGACTTGTTCGTGACGTGTATATCCCAAAGGATTATTACTCAGGGTAAGCATCTTGTGTTTGTTTATGTTTAACAGTACTCCAACCATGGCATGTTATTGGGTTCATTAAGCTGATACAACCTGATTCCCAAACGTGAGTTTTACATTCATTTCAAGTTAACACGATAATGACACATCTTACAGTTAACCTTTGGGCTTATTAGCACCCATTTTCATTAAGATAAAATCAAATTAACCTCAAAGGGGTTCAGGTGGTAACTTTTAGGTTTACTGATTAAGCATTTAGCCAAGTCTTTTACGTTAGAAATTGAGCCTGGTTCTTACCCTTGTTTGTTGCTCTCTCAGCCATGTGTCATAATCAGCCTCTTATATAGACCAATCATCCTTGAAAGTCAAAATAAATGGAATGCATTTTACAGGTTTTCTCATTGCGTGTCTAGATTCTATTTTCAGAACAATGTCAACTTTCTTCTTATGGAAATACCTCTTTTGTGGCTGCATATGCAATATGAAATAAACTCATACGAAAATTTCAAGGTGGCCTTGTTACGACTATTTTTGAACTTAATCAATTCTTGAGGTGTACAGTGTACTGAGTTCTAAATCTGTAAGAAAATTTTAGATCGTATCGACATTCGGTAGAATTTGTTATTCATGGTTAGGGAATGAAGAGGATGAGAAATGACAAATGAAGTTTCACCAGACCTTTTTTTTTTTCTGGGTGAATTTTATTCCCATTTCACAGTGTGTTAAATTTTGAACTGCTTTGTCAGGGGGCATTTTGGTTTGAACTTTGAAGTTAAAACAAGCCCAGCCCCATATTAATGAGGGTCTACTACTTTTCACTGCCTAACATATTGCTCGTCAAGAATGTAAAGAGTAATATCCAAATGAGGTTGTCTCTCTCTGAGGAGATATTAGATAATTACCCCCATCAATAGAAGTTGATGAGGAAGACGATAGATTCTTGAGCAATTGAAGCCAACAAGGGGAAGGTTTTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCATGTGTTTCCAAGTATTTGAAGAATTTTCAAGTCATGAATTGTTGATTTCAAGTACTTGTATCAAGATATGTGAAGATTTTTCAAGTCAAGTGATGTTGAATCGAAGTGCTTTAGTTACAAGAATATGAAGATTTTTCAAGTCACTTGCCTCTTTCATGCTTGATTGTAAAGAGAAGGTTAGCTACTAAACTTTGAAATTAGCTGCTTTATGTAACTTCAGCCTCAGCTTAGATGAAAGCAATCTGAAGTTGATATTGGATGTGAAAAGAAAGCTATTCAGTTTATGGTATCCCAAATTCATTTGGACGCGAAAAGTATACAACTTTTAATTAGTCAGTGAAGTTACCAAGATTTTTGTCCAGAATGAGTTCCTTATTTTCATTATGAAAATTTTGTTTGAATTATTTGTAGTGAACCTAGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTACGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAGTTTGCTGGGAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGA ATGAGGAGATACAGTCCACCTTATCACAGCCCTCCAAGAAGAGGATATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCACCCTTTGAGAGGTTTGGACTTGTTCGTGACGTGTATATCCCAAAGGATTATTACTCAGGTGAACCTAGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTACGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAGTTTGCTGGGAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGA ATGAGGAGATACAGTCCACCTTATCACAGCCCTCCAAGAAGAGGATATGGTGGTCGAGGAAGAAGCCCCCCGGGAAGGGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTATGGAAGACGAAGGGAACAGTCTCATGGTAGCCTTTTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCACCCTTTGAGAGGTTTGGACTTGTTCGTGACGTGTATATCCCAAAGGATTATTACTCAGGTGAACCTAGAGGATTTGCATTTGTGGAGTTTGTTGATCCTTACGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAGTTTGCTGGGAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCAAGGAAGAGGCCAGAACAGATGCGTCAAAGGAGTAGA MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGGYGRRREQSHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR Homology
BLAST of MS017290 vs. NCBI nr
Match: KAG6600058.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 274.6 bits (701), Expect = 4.6e-70 Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of MS017290 vs. NCBI nr
Match: KAG7030730.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68 Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of MS017290 vs. NCBI nr
Match: XP_022139086.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia]) HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68 Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0
BLAST of MS017290 vs. NCBI nr
Match: XP_038892248.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida]) HSP 1 Score: 269.2 bits (687), Expect = 1.9e-68 Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of MS017290 vs. NCBI nr
Match: XP_038892246.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida] >XP_038892247.1 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 [Benincasa hispida]) HSP 1 Score: 269.2 bits (687), Expect = 1.9e-68 Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of MS017290 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 4.1e-53 Identity = 111/144 (77.08%), Postives = 122/144 (84.72%), Query Frame = 0
BLAST of MS017290 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 3.7e-30 Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of MS017290 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.1e-29 Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of MS017290 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.6e-18 Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 0
BLAST of MS017290 vs. ExPASy Swiss-Prot
Match: Q8WXF0 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17 Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 0
BLAST of MS017290 vs. ExPASy TrEMBL
Match: A0A6J1CBL6 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3673 GN=LOC111010084 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 7.2e-69 Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0
BLAST of MS017290 vs. ExPASy TrEMBL
Match: A0A0A0KNV5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G181460 PE=4 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68 Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of MS017290 vs. ExPASy TrEMBL
Match: A0A1S3CFP8 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 6.1e-68 Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0
BLAST of MS017290 vs. ExPASy TrEMBL
Match: A0A6J1JIZ1 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661 GN=LOC111485002 PE=4 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 8.0e-68 Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 0
BLAST of MS017290 vs. ExPASy TrEMBL
Match: A0A6J1FWZ5 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111447732 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66 Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0
BLAST of MS017290 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 ) HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54 Identity = 111/144 (77.08%), Postives = 122/144 (84.72%), Query Frame = 0
BLAST of MS017290 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 ) HSP 1 Score: 132.5 bits (332), Expect = 2.6e-31 Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of MS017290 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 ) HSP 1 Score: 132.5 bits (332), Expect = 2.6e-31 Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of MS017290 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A ) HSP 1 Score: 129.0 bits (323), Expect = 2.9e-30 Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 0
BLAST of MS017290 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 ) HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28 Identity = 73/151 (48.34%), Postives = 95/151 (62.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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