MS017282 (gene) Bitter gourd (TR) v1

Overview


Name	MS017282
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CASP-like protein
Location	scaffold33: 1312762 .. 1313741 (-)
RNA-Seq Expression	MS017282
Synteny	MS017282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCCCCTCAGTCCCTCCGCAACGGCGGCGGCACGCCTTCGCCGCACGCTCGAATCCCCACCCCTCACCACCACTTCCACTCCACCGTCTCCGTCCACAAGCTCAAGCGGTTCAACTCTCTCATCCTCGTCTTCCGTCTCTCTACCTTCTGCTTCTCCCTCGCCTCCGCCGTCTTCATGCTCACCAACTCTCGCGGCGCCTCTGGATCCGATTCTCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGCAAACGCACGCCTCTTTCCGACTCCGTTTCCTTTTCGCCTTTCTGTTTGCTTGCCGAGAAAATCTAGGGCGCACCGATTTACAATTTTGAGGAAAAAGAGGAACACGAAACTAATCAATCACTTCGCGCCTGATAATTTCATCAAGAATTCCTCGAATCTCGAAACACATTTCGTCCTCAAACGAAACACTACTAGAATAGAATCAGCCGATTTTCTTTCCACTTTCTCGGCAGCCAAACAGGCTCCCAGCGAGAGCTAACAATGATCGAAAATCTCCGACCAGGTACGTCTTCGCCGCGAACGCAATAGTCGCCGTGTACTCTCTGTTCGAAATGATCGCCGCCGTGTGGGAAATCTCCAGAGACGACACTCTCTTCCCGGAGATTTTACAGGTCTGGTTCGACTTCGGGCACGACCAGGTCAAAACCCTAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCTGATCCAATTAGGGCTCTGATTCCATAGGCGTTCGCCTACCTTCTTCTCTCTGCGGACTCGGCAGGGACGGCTCTGGCGATAACTCTGAGAGGAACCGACACGTGTACGGCCACGAGCGCGTTCTGCATTCAATCAACCATCTCGATCGCACTGGGATTTGCCGGTTTCCTGTTCCTCGGGTTCTCGTCGCTGCTTTCGGGTTTCCGGGTCGTCTGTTTCCTAATCAACGGCTCTCGTTTTCACTTC

mRNA sequence

ATGCGATCCCCTCAGTCCCTCCGCAACGGCGGCGGCACGCCTTCGCCGCACGCTCGAATCCCCACCCCTCACCACCACTTCCACTCCACCGTCTCCGTCCACAAGCTCAAGCGGTTCAACTCTCTCATCCTCGTCTTCCGTCTCTCTACCTTCTGCTTCTCCCTCGCCTCCGCCGTCTTCATGCTCACCAACTCTCGCGGCGCCTCTGGATCCGATTCTCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGTCTTCGCCGCGAACGCAATAGTCGCCGTGTACTCTCTGTTCGAAATGATCGCCGCCGTGTGGGAAATCTCCAGAGACGACACTCTCTTCCCGGAGATTTTACAGGTCTGGTTCGACTTCGGGCACGACCAGGCGTTCGCCTACCTTCTTCTCTCTGCGGACTCGGCAGGGACGGCTCTGGCGATAACTCTGAGAGGAACCGACACGTGTACGGCCACGAGCGCGTTCTGCATTCAATCAACCATCTCGATCGCACTGGGATTTGCCGGTTTCCTGTTCCTCGGGTTCTCGTCGCTGCTTTCGGGTTTCCGGGTCGTCTGTTTCCTAATCAACGGCTCTCGTTTTCACTTC

Coding sequence (CDS)

ATGCGATCCCCTCAGTCCCTCCGCAACGGCGGCGGCACGCCTTCGCCGCACGCTCGAATCCCCACCCCTCACCACCACTTCCACTCCACCGTCTCCGTCCACAAGCTCAAGCGGTTCAACTCTCTCATCCTCGTCTTCCGTCTCTCTACCTTCTGCTTCTCCCTCGCCTCCGCCGTCTTCATGCTCACCAACTCTCGCGGCGCCTCTGGATCCGATTCTCCTCGCTGGTACGATTTCGACGCCTTCAGGTACGTCTTCGCCGCGAACGCAATAGTCGCCGTGTACTCTCTGTTCGAAATGATCGCCGCCGTGTGGGAAATCTCCAGAGACGACACTCTCTTCCCGGAGATTTTACAGGTCTGGTTCGACTTCGGGCACGACCAGGCGTTCGCCTACCTTCTTCTCTCTGCGGACTCGGCAGGGACGGCTCTGGCGATAACTCTGAGAGGAACCGACACGTGTACGGCCACGAGCGCGTTCTGCATTCAATCAACCATCTCGATCGCACTGGGATTTGCCGGTTTCCTGTTCCTCGGGTTCTCGTCGCTGCTTTCGGGTTTCCGGGTCGTCTGTTTCCTAATCAACGGCTCTCGTTTTCACTTC

Protein sequence

MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGFSSLLSGFRVVCFLINGSRFHF

Homology

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BLAST of MS017282 vs. NCBI nr
Match: XP_022138955.1 (CASP-like protein 4C1 [Momordica charantia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 199/201 (99.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQSLRNGGG+PSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF
Sbjct: 1   MRSPQSLRNGGGSPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEM+AAVWEISRDDTLFPEILQV
Sbjct: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMVAAVWEISRDDTLFPEILQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF
Sbjct: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180

Query: 181 SSLLSGFRVVCFLINGSRFHF 202
           SSLLSGFRVVCFLINGSRFHF
Sbjct: 181 SSLLSGFRVVCFLINGSRFHF 201

[Close]

BLAST of MS017282 vs. NCBI nr
Match: XP_023524861.1 (CASP-like protein 4C1 [Cucurbita pepo subsp. pepo] >KAG6600997.1 CASP-like protein 4C2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031611.1 CASP-like protein 4C2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.5 bits (937), Expect = 2.9e-97
Identity = 188/200 (94.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSLASAVF
Sbjct: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           M+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFPEILQV
Sbjct: 61  MITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQAFAYLLLSA SAGTAL ITLRGTDTC ATSAFC+QSTISIALGFAGFLFLG 
Sbjct: 121 WFDFGHDQAFAYLLLSAGSAGTALLITLRGTDTCRATSAFCVQSTISIALGFAGFLFLGL 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SSLLSGFRVVCF+INGSRFH
Sbjct: 181 SSLLSGFRVVCFVINGSRFH 199

[Close]

BLAST of MS017282 vs. NCBI nr
Match: XP_004147690.1 (CASP-like protein 4C1 [Cucumis sativus] >KGN50549.1 hypothetical protein Csa_021394 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 189/205 (92.20%), Postives = 195/205 (95.12%), Query Frame = 0


Query: 1   MRSPQSLRN----GGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLA 60
           MRSPQSLRN    GGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSLA
Sbjct: 1   MRSPQSLRNGGVGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLA 60

Query: 61  SAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPE 120
           SAVFM+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFPE
Sbjct: 61  SAVFMITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPE 120

Query: 121 ILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFL 180
           ILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC  TSAFC+QSTISIALGFAGFL
Sbjct: 121 ILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFAGFL 180

Query: 181 FLGFSSLLSGFRVVCFLINGSRFHF 202
           FLG SSLLSGFRVVCF+INGSRFHF
Sbjct: 181 FLGLSSLLSGFRVVCFVINGSRFHF 204

[Close]

BLAST of MS017282 vs. NCBI nr
Match: XP_038893216.1 (CASP-like protein 4C1 [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-96
Identity = 189/206 (91.75%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MRSPQSLRN-----GGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSL 60
           MRSPQSLRN     GGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSL
Sbjct: 1   MRSPQSLRNGGAGGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSL 60

Query: 61  ASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFP 120
           ASAVFM+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFP
Sbjct: 61  ASAVFMITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFP 120

Query: 121 EILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGF 180
           EILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC  TSAFC+QSTISIALGFAGF
Sbjct: 121 EILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFAGF 180

Query: 181 LFLGFSSLLSGFRVVCFLINGSRFHF 202
           LFLG SSLLSGFRVVCF+INGSRFHF
Sbjct: 181 LFLGLSSLLSGFRVVCFVINGSRFHF 205

[Close]

BLAST of MS017282 vs. NCBI nr
Match: XP_022957593.1 (CASP-like protein 4C1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 362.5 bits (929), Expect = 2.4e-96
Identity = 187/200 (93.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSLASAVF
Sbjct: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           M+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFPEILQV
Sbjct: 61  MITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQAFAYLLLSA SAGTAL ITLR TDTC ATSAFC+QSTISIALGFAGFLFLG 
Sbjct: 121 WFDFGHDQAFAYLLLSAGSAGTALLITLRRTDTCRATSAFCVQSTISIALGFAGFLFLGL 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SSLLSGFRVVCF+INGSRFH
Sbjct: 181 SSLLSGFRVVCFVINGSRFH 199

[Close]

BLAST of MS017282 vs. ExPASy Swiss-Prot
Match: B9SR15 (CASP-like protein 4C1 OS=Ricinus communis OX=3988 GN=RCOM_0464280 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 9.0e-78
Identity = 159/201 (79.10%), Postives = 170/201 (84.58%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPT-PHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAV 60
           MRSPQSLRN G TPSP  R P  P  HFHSTVS+ KLKRFN LILVFRLSTFCFSLAS+V
Sbjct: 1   MRSPQSLRN-GETPSPSPRPPRFPTPHFHSTVSLQKLKRFNLLILVFRLSTFCFSLASSV 60

Query: 61  FMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQ 120
           FMLTN         P WY FDAFRYVFAANAIVA+YSLFEM A+VWEISR +TLFPEILQ
Sbjct: 61  FMLTN---------PTWYHFDAFRYVFAANAIVAIYSLFEMAASVWEISRGNTLFPEILQ 120

Query: 121 VWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLG 180
           VWFDFGHDQ FAYLLLSADSA TALA TL+G DTC A++AFC+QS I+IALGFAGFLFLG
Sbjct: 121 VWFDFGHDQVFAYLLLSADSAATALAKTLKGGDTCAASNAFCVQSYIAIALGFAGFLFLG 180

Query: 181 FSSLLSGFRVVCFLINGSRFH 201
            SSLLSGFRVVCFLINGSRF+
Sbjct: 181 LSSLLSGFRVVCFLINGSRFY 191

[Close]

BLAST of MS017282 vs. ExPASy Swiss-Prot
Match: B9HTK2 (CASP-like protein 4C2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_822486 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-71
Identity = 148/200 (74.00%), Postives = 161/200 (80.50%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQ  R+GG T            HF STVSV KLKRFNSLILVFR + FCFSLASAVF
Sbjct: 1   MRSPQPHRSGGDT----------QQHFQSTVSVQKLKRFNSLILVFRFAAFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSR   GSDS  WY+FDAFRYVFAANAIVA+YSLFEM A+VWEISR+ TLFPEI QV
Sbjct: 61  MLTNSR---GSDSLHWYNFDAFRYVFAANAIVAIYSLFEMAASVWEISRNATLFPEICQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQ FAYLLLSA++AGT LA TL+  DTCT   AFC+QS I+I LGFAGFLFLG 
Sbjct: 121 WFDFGHDQVFAYLLLSANTAGTELARTLK--DTCTDNKAFCVQSDIAIVLGFAGFLFLGI 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SSL SGFRVVCF+INGSRF+
Sbjct: 181 SSLFSGFRVVCFIINGSRFY 185

[Close]

BLAST of MS017282 vs. ExPASy Swiss-Prot
Match: B9HMF8 (CASP-like protein 4C1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820327 PE=3 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 145/200 (72.50%), Postives = 158/200 (79.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MR PQ  RNGG T            HFHST+S+ KLKRFNSLILVFR S FCFSLASAVF
Sbjct: 1   MRFPQPHRNGGET----------QQHFHSTISLQKLKRFNSLILVFRFSAFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSR   GSDS  WY+FDAFRYVFAANAIVAVYSLFEM AAVWEISR+ TLFPE+ QV
Sbjct: 61  MLTNSR---GSDSFHWYNFDAFRYVFAANAIVAVYSLFEMTAAVWEISRNATLFPEVCQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQ FAYLLLSA+S GT +A T++  D CT    FC+QS I+IALGF GFLFLG 
Sbjct: 121 WFDFGHDQVFAYLLLSANSTGTEMARTMK--DACTDNKPFCVQSDIAIALGFVGFLFLGV 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SSL SGFRVVCF+INGSRF+
Sbjct: 181 SSLFSGFRVVCFIINGSRFY 185

[Close]

BLAST of MS017282 vs. ExPASy Swiss-Prot
Match: Q9M2U0 (CASP-like protein 4C1 OS=Arabidopsis thaliana OX=3702 GN=At3g55390 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-67
Identity = 138/200 (69.00%), Postives = 154/200 (77.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSP + RNG    SP  R    H HFHSTV+  KL+RFNSLIL+ RL++F FSLASAVF
Sbjct: 1   MRSPHAFRNG---ESPTLR---DHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSR   GS SP WYDFDAFR+VF ANAIVA+YS+FEM   VWE SR+ TL+PE  QV
Sbjct: 61  MLTNSR---GSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQ F+YLLLSA SA  ALA T+RG DTCTA  AFC+QS ++I LGFA FLFL F
Sbjct: 121 WFDFGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAF 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SS  SGFRV CFLI GSRFH
Sbjct: 181 SSCFSGFRVACFLITGSRFH 191

[Close]

BLAST of MS017282 vs. ExPASy Swiss-Prot
Match: A9T836 (CASP-like protein 4C3 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_192523 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 81/171 (47.37%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 26  HFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVFMLTNSRGASGSDSPRWYDFDAFRYV 85
           H++   +  K +R N +IL+FR  TF FSL S + M TN           WYDFD FRYV
Sbjct: 15  HYYGKSTAQKHRRSNGIILIFRALTFSFSLTSVIVMGTNRHRIDAQSRVAWYDFDPFRYV 74

Query: 86  FAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALA 145
            A NAI+ +YS  E+  AV+   +D    PE  QVWFD+GHDQ FAYLL SA+SAG A+A
Sbjct: 75  LAVNAIICIYSFVEIWLAVYTYLKDTLFLPETFQVWFDYGHDQGFAYLLFSANSAGIAMA 134

Query: 146 ITLR-------GTDTCTATSAFCIQSTISIALGFAGFLFLGFSSLLSGFRV 190
             L+       G   C+    FC Q+  SI LGF  FLFL  SSLL+G RV
Sbjct: 135 QLLQSGNSLIHGAYRCSDAGVFCTQARASIGLGFGAFLFLALSSLLTGLRV 185

[Close]

BLAST of MS017282 vs. ExPASy TrEMBL
Match: A0A6J1CAY7 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111010005 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 199/201 (99.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQSLRNGGG+PSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF
Sbjct: 1   MRSPQSLRNGGGSPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEM+AAVWEISRDDTLFPEILQV
Sbjct: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMVAAVWEISRDDTLFPEILQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF
Sbjct: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180

Query: 181 SSLLSGFRVVCFLINGSRFHF 202
           SSLLSGFRVVCFLINGSRFHF
Sbjct: 181 SSLLSGFRVVCFLINGSRFHF 201

[Close]

BLAST of MS017282 vs. ExPASy TrEMBL
Match: A0A0A0KNW2 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G182050 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.3e-97
Identity = 189/205 (92.20%), Postives = 195/205 (95.12%), Query Frame = 0


Query: 1   MRSPQSLRN----GGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLA 60
           MRSPQSLRN    GGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSLA
Sbjct: 1   MRSPQSLRNGGVGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLA 60

Query: 61  SAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPE 120
           SAVFM+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFPE
Sbjct: 61  SAVFMITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPE 120

Query: 121 ILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFL 180
           ILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC  TSAFC+QSTISIALGFAGFL
Sbjct: 121 ILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFAGFL 180

Query: 181 FLGFSSLLSGFRVVCFLINGSRFHF 202
           FLG SSLLSGFRVVCF+INGSRFHF
Sbjct: 181 FLGLSSLLSGFRVVCFVINGSRFHF 204

[Close]

BLAST of MS017282 vs. ExPASy TrEMBL
Match: A0A6J1H0N7 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111458937 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96
Identity = 187/200 (93.50%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCFSLASAVF
Sbjct: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           M+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TLFPEILQV
Sbjct: 61  MITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPEILQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQAFAYLLLSA SAGTAL ITLR TDTC ATSAFC+QSTISIALGFAGFLFLG 
Sbjct: 121 WFDFGHDQAFAYLLLSAGSAGTALLITLRRTDTCRATSAFCVQSTISIALGFAGFLFLGL 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SSLLSGFRVVCF+INGSRFH
Sbjct: 181 SSLLSGFRVVCFVINGSRFH 199

[Close]

BLAST of MS017282 vs. ExPASy TrEMBL
Match: A0A5D3BVM1 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00170 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.5e-96
Identity = 188/208 (90.38%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MRSPQSLRN-------GGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCF 60
           MRSP SLRN       GGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCF
Sbjct: 1   MRSPHSLRNGGGGGGGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCF 60

Query: 61  SLASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTL 120
           SLASAVFM+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TL
Sbjct: 61  SLASAVFMITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTL 120

Query: 121 FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFA 180
           FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC  TSAFC+QSTISIALGFA
Sbjct: 121 FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFA 180

Query: 181 GFLFLGFSSLLSGFRVVCFLINGSRFHF 202
           GFLFLG SSLLSGFRVVCF+INGSRFHF
Sbjct: 181 GFLFLGLSSLLSGFRVVCFVINGSRFHF 207

[Close]

BLAST of MS017282 vs. ExPASy TrEMBL
Match: A0A1S3CF55 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.5e-96
Identity = 188/208 (90.38%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MRSPQSLRN-------GGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCF 60
           MRSP SLRN       GGGTPSPHARIPTPHHHFHSTVSV KLKRFNSLILVFRLSTFCF
Sbjct: 1   MRSPHSLRNGGGGGGGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCF 60

Query: 61  SLASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTL 120
           SLASAVFM+TNSRG SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA+VWEISR+ TL
Sbjct: 61  SLASAVFMITNSRG-SGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTL 120

Query: 121 FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFA 180
           FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITL+GTDTC  TSAFC+QSTISIALGFA
Sbjct: 121 FPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFA 180

Query: 181 GFLFLGFSSLLSGFRVVCFLINGSRFHF 202
           GFLFLG SSLLSGFRVVCF+INGSRFHF
Sbjct: 181 GFLFLGLSSLLSGFRVVCFVINGSRFHF 207

[Close]

BLAST of MS017282 vs. TAIR 10
Match: AT3G55390.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-68
Identity = 138/200 (69.00%), Postives = 154/200 (77.00%), Query Frame = 0


Query: 1   MRSPQSLRNGGGTPSPHARIPTPHHHFHSTVSVHKLKRFNSLILVFRLSTFCFSLASAVF 60
           MRSP + RNG    SP  R    H HFHSTV+  KL+RFNSLIL+ RL++F FSLASAVF
Sbjct: 1   MRSPHAFRNG---ESPTLR---DHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAVF 60

Query: 61  MLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQV 120
           MLTNSR   GS SP WYDFDAFR+VF ANAIVA+YS+FEM   VWE SR+ TL+PE  QV
Sbjct: 61  MLTNSR---GSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQV 120

Query: 121 WFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCTATSAFCIQSTISIALGFAGFLFLGF 180
           WFDFGHDQ F+YLLLSA SA  ALA T+RG DTCTA  AFC+QS ++I LGFA FLFL F
Sbjct: 121 WFDFGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAF 180

Query: 181 SSLLSGFRVVCFLINGSRFH 201
           SS  SGFRV CFLI GSRFH
Sbjct: 181 SSCFSGFRVACFLITGSRFH 191

[Close]

BLAST of MS017282 vs. TAIR 10
Match: AT1G79780.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-09
Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 73  SPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDTLFPEILQVWFDFGHDQAFAY 132
           S  W    +++YV  A A   +YSL ++   V+ +     + P   Q W  F  DQ F Y
Sbjct: 61  SSNWSFSPSYQYVVGACAGTVLYSLLQLCLGVYRLVTGSPITPSRFQAWLCFTSDQLFCY 120

Query: 133 LLLSADSAGTALA----ITLRGT---DTCTATSAFCIQSTISIALGFAGFLFLGFSSLLS 186
           L++SA SAG+ +       +R T   D C   S+FC    +S+ L F  F+FL  SS  +
Sbjct: 121 LMMSAGSAGSGVTNLNKTGIRHTPLPDFCKTLSSFCNHVALSLLLVFLSFIFLASSSFFT 180

[Close]

BLAST of MS017282 vs. TAIR 10
Match: AT2G36330.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 44  LVFRLSTFCFSLAS-AVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIA 103
           L FRLS    +L S ++     ++G SG    R+ +   +R+  + N +  VYS F+   
Sbjct: 137 LGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKE---YRFCLSVNVVAFVYSSFQACD 196

Query: 104 AVWEISRDDTLFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLRGTDTCT--ATSAF 163
             + + ++  L    L+  F+F  DQ  AYLL+SA +A    A+T R  D  +      F
Sbjct: 197 LAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTA----AVT-RVDDWVSNWGKDEF 256

Query: 164 CIQSTISIALGFAGFLFLGFSSLLSGFRV 190
              ++ SIA+ F  FL   FSSL+SG+ +
Sbjct: 257 TEMASASIAMSFLAFLAFAFSSLISGYNL 277

[Close]

BLAST of MS017282 vs. TAIR 10
Match: AT1G17200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 45.4 bits (106), Expect = 6.1e-05
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 45  VFRLSTFCFSLASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAV 104
           + RL+     +A+ V ML +S   +   S  + +  AFRY+  AN I A YSL  + AA+
Sbjct: 36  MLRLAPVGLCVAALVVMLKDSE-TNEFGSISYSNLTAFRYLVHANGICAGYSL--LSAAI 95

Query: 105 WEISRDDTLFPEILQVWFDFGHDQAFAYLLLSADS-AGTALAITLRG------TDTCTAT 164
             + R  +  P   +VW  F  DQ   YL+L+A + +   L +   G      +D C++ 
Sbjct: 96  AAMPRSSSTMP---RVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSSY 155

Query: 165 SAFCIQSTISIALGFAGFLFLGFSSLLSGFRV 190
             FC ++T S+ + F    F    SL+S +++
Sbjct: 156 GGFCHRATASVIITFFVVCFYIVLSLISSYKL 181

[Close]

BLAST of MS017282 vs. TAIR 10
Match: AT2G38480.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-05
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 53  FSLASAVFMLTNSRGASGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIAAVWEISRDDT 112
           FSL + + M++N  G   +    + D++ +RYV A + I  +Y+ ++  A     S+ + 
Sbjct: 58  FSLIAFLIMVSNKHGYGRN----FNDYEEYRYVLAISIISTLYTAWQTFA---HFSKRE- 117

Query: 113 LFPEILQVWFDFGHDQAFAYLLLSADSAGTALAITLR-GTDTCTATSAFCIQSTISIALG 172
           +F     +  DF  DQ  AYLL+SA S+   L    R G D     SA    S IS+A+ 
Sbjct: 118 IFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNIFTDSA---ASAISMAI- 177

Query: 173 FAGFLFLGFSSLLSGFRV 190
           FA F+ L  S+L SG+++
Sbjct: 178 FA-FIALALSALFSGYKL 182

The following BLAST results are available for this feature:

BLAST of MS017282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138955.1	2.2e-105	99.00	CASP-like protein 4C1 [Momordica charantia]	[more]
XP_023524861.1	2.9e-97	94.00	CASP-like protein 4C1 [Cucurbita pepo subsp. pepo] >KAG6600997.1 CASP-like prote...	[more]
XP_004147690.1	1.1e-96	92.20	CASP-like protein 4C1 [Cucumis sativus] >KGN50549.1 hypothetical protein Csa_021...	[more]
XP_038893216.1	1.4e-96	91.75	CASP-like protein 4C1 [Benincasa hispida]	[more]
XP_022957593.1	2.4e-96	93.50	CASP-like protein 4C1 isoform X2 [Cucurbita moschata]	[more]

BLAST of MS017282 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SR15	9.0e-78	79.10	CASP-like protein 4C1 OS=Ricinus communis OX=3988 GN=RCOM_0464280 PE=2 SV=1	[more]
B9HTK2	1.3e-71	74.00	CASP-like protein 4C2 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_822486 PE=3 S...	[more]
B9HMF8	1.4e-70	72.50	CASP-like protein 4C1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_820327 PE=3 S...	[more]
Q9M2U0	3.2e-67	69.00	CASP-like protein 4C1 OS=Arabidopsis thaliana OX=3702 GN=At3g55390 PE=2 SV=1	[more]
A9T836	1.6e-34	47.37	CASP-like protein 4C3 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_192523 PE=2 ...	[more]

BLAST of MS017282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAY7	1.1e-105	99.00	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111010005 PE=3 SV=1	[more]
A0A0A0KNW2	5.3e-97	92.20	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G182050 PE=3 SV=1	[more]
A0A6J1H0N7	1.2e-96	93.50	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111458937 PE=3 SV=1	[more]
A0A5D3BVM1	4.5e-96	90.38	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00...	[more]
A0A1S3CF55	4.5e-96	90.38	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1	[more]

BLAST of MS017282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55390.1	2.3e-68	69.00	Uncharacterised protein family (UPF0497)	[more]
AT1G79780.1	9.1e-09	32.50	Uncharacterised protein family (UPF0497)	[more]
AT2G36330.1	2.9e-07	31.54	Uncharacterised protein family (UPF0497)	[more]
AT1G17200.1	6.1e-05	29.61	Uncharacterised protein family (UPF0497)	[more]
AT2G38480.1	8.0e-05	32.61	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 40..177 e-value: 1.5E-29 score: 102.8
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 44..186 e-value: 3.8E-12 score: 44.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11615:SF236	CASP-LIKE PROTEIN 4C1	coord: 1..201
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017282.1	MS017282.1	mRNA