![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS017278 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACTGGAAACCGATGGCTGCACCACCGGCAAGGGCTCGTGCTGATTACGATTACCTCATTAAGCTTTTGCTTATTGGCGATAGCGGTATATATGTGCCCTACCCTACCCTACCCTCGTTTTTTTTTTTTTTTGAGTTTTTAATTTGAAATGGGAATGGGAATGGGAATGTAAGTCGCTGTTGGAGATCTGATGAATGGGTTGTGTGTAGTGTGGCACGGAATTTGTTTACATCAATGTGATTTCGGTTCTTCTTGTTTCGGTGGGAGTTAATTTATTGCATGTTCTCGGTTTTTGTTTGGACCTTTTGATTTGGAAATGGTCGATTCTTGTCGATCTCTCCCCCTATCCAGGATTTTTTTTGGGTTCAAATTTGTGGTTCTGTTTGCAACATCGTCGTGTACCTGTTAAGAGGGGCCGTGATCTTTTGACGTTCAATGTGGGTGGGATTATCCTTAGAGAACTTGAAATTTTTCTGTTCTCTCTATTTATTTTTCAATATGAGGAGGGTGGTTGTTGGGATCGCCCTTCGAAAACCATACTGTTTTTTTTATTTAAATCTTAAAGTATTGCGCATGATAGTTGAGTTTTATGCAGGAATCGTGGTTATTTTTCATGGTAATAGACTGATATTTTTCGTTAGTGCCTCTGCCTCTCCATATGTTTAGTTTGAAGCATTGTATATGCAATATGTTACTCTCTCTGCCTCTTGCTGAGTTAAGTGGTTTATTTGTTTAGAGCTAGTAGACCTCTAGAAAAGTCAAGTTTATCTTCTATTCAAGAATAGCAAGTTTAATTATACGAGTCCCATGGAAATTGTGCGATAGATTTGTGAGCCCATCACTTTGGCATACTAGTAGTCTTCACGTAAGCCATTTCCATTCAATTGTTTTGCAGGTGTGGGAAAGAGTTGTCTGCTTCTGCGTTTTTCTGATGGTTCTTTCACAACCAGTTTTATCACCACAATTGGGTTTGTAATCTGTGTACCCTTGAAGCTTGCCCATTAAACGTTTTAGCGTTGTATCAATTTGAATACATTCAAAAGGTGTAGTAAGGGTCATAGGCTCATAGGTGGGACTATTAGCTGAAAATAAGGTACAGGAGTGTTTGGAACGATTATAGTTTATCAGATAGCTGGTTTGACATTTTCATGTACTGGTAATCATTTGTATGGTATTGATTGATATGCGTAACAGCGTAAGAAATTCCATATGTTATCTAAGAACTTATAGTTTGGAAGCTATATACAAGTGCGTTTCTTTAATATCAGCCATATACATCTTATGGCAGTATTGATTTTAAGATAAGAACCATTGAGCTTGATGGGAAGAGAATTAAATTGCAAATTTGGGATACGGCTGGCCAGGAGCGTTTTCGGACTATCACAACAGGTTTGTATCTGATATTTGATATTATTTCTCCTAGATATTGTAATTGGACGGATGCCTCCTCTGTGAAAGTGAATTTTGTATTATTTGAATGTAGAGAGGAAATCAGGGATAATTTTACCCTTCTTACATGTAATTGGTGGTGTCTCTCCAAAGTTCTCTGTAACCATTCATGCTCTTTTATTTTACGCTGATGGAAAAAGTTTTGGAATAAATCTTGAAGCTGGAAGCTCAAAATTTTTTAAAAATAATTTGACTCATTTAGGTATGTTCACTTATTTTGATGTTTATTTTGACATCAAACATTTCAAGTTTTTCAATTTAGTAAAGAAAGGGATTATTCCTGTTAGTATCAAGGTCCACGTGCTTCTAAGTTTTGTTACGAGATATGGAAAGAGAAGTGTTAGTGAGTAACTCGCTTCTACAACTCCCTGAAACCAATTTTTATTACAATGTTAGTGAAGTGAAAACTTTATTCTGTCTATAACTTTGATGATTATCGTCCTGTAGCTTACTATCGTGGAGCCATGGGTATTTTGCTGGTGTATGATGTCACTGACGAGTCATCTTTCAACAGTGAGTTATTTTATTGTCTATTTATAATGTATTTGATCTGCAATTGCTCTGCTCATCTGTTTACATAATAAATCTTTGACCTTGATGGATTCATGGTTCATTCTGTCTATTCAAGTTCATATTTGTCTAACTTGTCAAATTTGTTTATATAACCATCAATTTTCAGTTAGGGGTACAAGTGGGTCGGTTATTTGTCAAAACTTATACCAATTTAACCTATTAGTTTAATAAAACTGAAAATTTTGATGCAGAAACTTACCTTTTGGACTAAAATGGCCAATCACCAAACTGACCAAAATTGGACTGAACCAACCGTTTAATTTTTAGTTATATTTATGTATCAAACTGAACTGATTGAGACGATACCAACTCAGTTTTTGTTGGGGTATTTTTGGGTTATTGAACTTGCACCCCTAGCTTCGGTCCCTCATCACTTCTACAGCTATCTTATTTGCATCTATTATGAAGTTTACTCTTTTCTTACTCAGACATTAGGAATTGGATTCGCAATATTGAACAGCATGCATCTGATAATGTGAACAAGATACTAGTAGGAAACAAGGCTGATATGGATGAAAGTAAAAGGGTAAGCATTTTTTATGGCTCAACTTCTCTCAACCTTTGTTTTTCTTAGTGCTCGGCACCGAATAATTACAAGTTCAAGAAGCTAAATGTAACTTCACTTTGAAGCTTATACTCAGTTTTAAAATATCAGTTGATGTTATCTTTTGTTTACCTTGTATCTCTCTTTTTGTTTTGTCACAGGCTGTGCCTACTTCAAAAGGTCAAGCTCTTGCTGATGAGTATAATATCAAATTCTTCGAAACCGTAAGTCTGAAATGCCTCAAGATCGCTTATAATTAGAATCCTTTTAGTATTTATTTATTGGTGCTTCTTAGTACTTGCATTCAAAGAATATTTCCTGCAGAGTGCCAAGACAAACCTGAATGTAGAGGAGGTTTTCTTTTCCATTGCCAGGGACATTAAGCAAAGGCTTGCAGACACAGATTCAAAGGCGGAGGTATTTGCTGTTTGTTTCTATTTCTGAATTACTTTGAATTTCCATTTGTTATCACTAAATAAATCCATAATGTGGATGGGATCTCTGTGTAATCCAGCCTCAAACAATCAAGATAAACAAGCCAGATGGAGCAGCCGGTGATGGTCAAGCAGCCCAAAAGTCAGCTTGCTGTGGCTCC TACTGGAAACCGATGGCTGCACCACCGGCAAGGGCTCGTGCTGATTACGATTACCTCATTAAGCTTTTGCTTATTGGCGATAGCGGTGTGGGAAAGAGTTGTCTGCTTCTGCGTTTTTCTGATGGTTCTTTCACAACCAGTTTTATCACCACAATTGGTATTGATTTTAAGATAAGAACCATTGAGCTTGATGGGAAGAGAATTAAATTGCAAATTTGGGATACGGCTGGCCAGGAGCGTTTTCGGACTATCACAACAGCTTACTATCGTGGAGCCATGGGTATTTTGCTGGTGTATGATGTCACTGACGAGTCATCTTTCAACAACATTAGGAATTGGATTCGCAATATTGAACAGCATGCATCTGATAATGTGAACAAGATACTAGTAGGAAACAAGGCTGATATGGATGAAAGTAAAAGGGCTGTGCCTACTTCAAAAGGTCAAGCTCTTGCTGATGAGTATAATATCAAATTCTTCGAAACCAGTGCCAAGACAAACCTGAATGTAGAGGAGGTTTTCTTTTCCATTGCCAGGGACATTAAGCAAAGGCTTGCAGACACAGATTCAAAGGCGGAGCCTCAAACAATCAAGATAAACAAGCCAGATGGAGCAGCCGGTGATGGTCAAGCAGCCCAAAAGTCAGCTTGCTGTGGCTCC TACTGGAAACCGATGGCTGCACCACCGGCAAGGGCTCGTGCTGATTACGATTACCTCATTAAGCTTTTGCTTATTGGCGATAGCGGTGTGGGAAAGAGTTGTCTGCTTCTGCGTTTTTCTGATGGTTCTTTCACAACCAGTTTTATCACCACAATTGGTATTGATTTTAAGATAAGAACCATTGAGCTTGATGGGAAGAGAATTAAATTGCAAATTTGGGATACGGCTGGCCAGGAGCGTTTTCGGACTATCACAACAGCTTACTATCGTGGAGCCATGGGTATTTTGCTGGTGTATGATGTCACTGACGAGTCATCTTTCAACAACATTAGGAATTGGATTCGCAATATTGAACAGCATGCATCTGATAATGTGAACAAGATACTAGTAGGAAACAAGGCTGATATGGATGAAAGTAAAAGGGCTGTGCCTACTTCAAAAGGTCAAGCTCTTGCTGATGAGTATAATATCAAATTCTTCGAAACCAGTGCCAAGACAAACCTGAATGTAGAGGAGGTTTTCTTTTCCATTGCCAGGGACATTAAGCAAAGGCTTGCAGACACAGATTCAAAGGCGGAGCCTCAAACAATCAAGATAAACAAGCCAGATGGAGCAGCCGGTGATGGTCAAGCAGCCCAAAAGTCAGCTTGCTGTGGCTCC YWKPMAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYNIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPQTIKINKPDGAAGDGQAAQKSACCGS Homology
BLAST of MS017278 vs. NCBI nr
Match: KAG6600049.1 (Ras-related protein RABE1c, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 424.1 bits (1089), Expect = 7.4e-115 Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 0
BLAST of MS017278 vs. NCBI nr
Match: XP_022139146.1 (ras-related protein RABE1c-like [Momordica charantia] >XP_022139147.1 ras-related protein RABE1c-like [Momordica charantia] >XP_022139148.1 ras-related protein RABE1c-like [Momordica charantia]) HSP 1 Score: 423.7 bits (1088), Expect = 9.7e-115 Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0
BLAST of MS017278 vs. NCBI nr
Match: XP_004147688.1 (ras-related protein RABE1c [Cucumis sativus] >XP_008461674.1 PREDICTED: ras-related protein RABE1c-like [Cucumis melo] >XP_038891057.1 ras-related protein RABE1c-like [Benincasa hispida] >KAA0050319.1 ras-related protein RABE1c-like [Cucumis melo var. makuwa] >KAE8647990.1 hypothetical protein Csa_021425 [Cucumis sativus] >TYK03537.1 ras-related protein RABE1c-like [Cucumis melo var. makuwa]) HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0
BLAST of MS017278 vs. NCBI nr
Match: KAG7030720.1 (Ras-related protein RABE1c, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 414.8 bits (1065), Expect = 4.5e-112 Identity = 211/228 (92.54%), Postives = 215/228 (94.30%), Query Frame = 0
BLAST of MS017278 vs. NCBI nr
Match: XP_022957409.1 (ras-related protein RABE1c-like [Cucurbita moschata] >XP_022967956.1 ras-related protein RABE1c-like [Cucurbita maxima] >XP_023512373.1 ras-related protein RABE1c-like [Cucurbita pepo subsp. pepo] >KAG6600995.1 Ras-related protein RABE1c, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 412.9 bits (1060), Expect = 1.7e-111 Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0
BLAST of MS017278 vs. ExPASy Swiss-Prot
Match: P28186 (Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 2.0e-110 Identity = 203/216 (93.98%), Postives = 209/216 (96.76%), Query Frame = 0
BLAST of MS017278 vs. ExPASy Swiss-Prot
Match: O24466 (Ras-related protein RABE1a OS=Arabidopsis thaliana OX=3702 GN=RABE1A PE=1 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-109 Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 0
BLAST of MS017278 vs. ExPASy Swiss-Prot
Match: Q39433 (Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 2.1e-104 Identity = 197/216 (91.20%), Postives = 203/216 (93.98%), Query Frame = 0
BLAST of MS017278 vs. ExPASy Swiss-Prot
Match: Q9LZD4 (Ras-related protein RABE1d OS=Arabidopsis thaliana OX=3702 GN=RABE1D PE=1 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 3.7e-101 Identity = 188/214 (87.85%), Postives = 198/214 (92.52%), Query Frame = 0
BLAST of MS017278 vs. ExPASy Swiss-Prot
Match: Q9SF91 (Ras-related protein RABE1e OS=Arabidopsis thaliana OX=3702 GN=RABE1E PE=1 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 5.9e-99 Identity = 184/215 (85.58%), Postives = 196/215 (91.16%), Query Frame = 0
BLAST of MS017278 vs. ExPASy TrEMBL
Match: A0A0A0KLV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182090 PE=4 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 1.7e-117 Identity = 218/220 (99.09%), Postives = 218/220 (99.09%), Query Frame = 0
BLAST of MS017278 vs. ExPASy TrEMBL
Match: A0A6J1CBT2 (ras-related protein RABE1c-like OS=Momordica charantia OX=3673 GN=LOC111010124 PE=4 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 4.7e-115 Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0
BLAST of MS017278 vs. ExPASy TrEMBL
Match: A0A5A7U9Z4 (Ras-related protein RABE1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00290 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 5.2e-114 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0
BLAST of MS017278 vs. ExPASy TrEMBL
Match: A0A1S3CGK2 (ras-related protein RABE1c-like OS=Cucumis melo OX=3656 GN=LOC103500219 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 5.2e-114 Identity = 214/216 (99.07%), Postives = 214/216 (99.07%), Query Frame = 0
BLAST of MS017278 vs. ExPASy TrEMBL
Match: A0A6J1HTI7 (ras-related protein RABE1c-like OS=Cucurbita maxima OX=3661 GN=LOC111467302 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 8.3e-112 Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0
BLAST of MS017278 vs. TAIR 10
Match: AT5G59840.1 (Ras-related small GTP-binding family protein ) HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-112 Identity = 205/216 (94.91%), Postives = 209/216 (96.76%), Query Frame = 0
BLAST of MS017278 vs. TAIR 10
Match: AT3G46060.1 (RAB GTPase homolog 8A ) HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-111 Identity = 203/216 (93.98%), Postives = 209/216 (96.76%), Query Frame = 0
BLAST of MS017278 vs. TAIR 10
Match: AT3G46060.2 (RAB GTPase homolog 8A ) HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-111 Identity = 203/216 (93.98%), Postives = 209/216 (96.76%), Query Frame = 0
BLAST of MS017278 vs. TAIR 10
Match: AT3G46060.3 (RAB GTPase homolog 8A ) HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-111 Identity = 203/216 (93.98%), Postives = 209/216 (96.76%), Query Frame = 0
BLAST of MS017278 vs. TAIR 10
Match: AT3G53610.1 (RAB GTPase homolog 8 ) HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-110 Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|