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MS017261 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTGCCGGAACCCCACCTGCTGTGGAGGCAAATTTTCAACAACTACTCCCAAACGAGGCCGTCCAGCTGGGATCAGGAGACCGCCTTCGCCGAGGACACCGCCGCCGCCGCCGTGTGGCCGCCCCGCTCCTACACCTGCAACTTCTGTATGCGCCAATTCCGGTCCGCCCAGGCTCTCGGTGGCCACATGAACGTTCACCGCCGGGACCGGGCCCGCCTCCAAAACGATCCCAGCCGTCCCTTCCGGCGGCCTACGCCTTCCCCCACCGTCAAATCTGCCACCTTTAACGGTCACGATGAAGATTCTTATAATTGCGTGAAAAATAATAATAAGAGATCTAAAGTTTGTGTTTCTTCATTCTCTGCTTCTTCTTCTTTGGATCAGGAGCTGGACCTTGAGCTCAGACTT CTGCCGGAACCCCACCTGCTGTGGAGGCAAATTTTCAACAACTACTCCCAAACGAGGCCGTCCAGCTGGGATCAGGAGACCGCCTTCGCCGAGGACACCGCCGCCGCCGCCGTGTGGCCGCCCCGCTCCTACACCTGCAACTTCTGTATGCGCCAATTCCGGTCCGCCCAGGCTCTCGGTGGCCACATGAACGTTCACCGCCGGGACCGGGCCCGCCTCCAAAACGATCCCAGCCGTCCCTTCCGGCGGCCTACGCCTTCCCCCACCGTCAAATCTGCCACCTTTAACGGTCACGATGAAGATTCTTATAATTGCGTGAAAAATAATAATAAGAGATCTAAAGTTTGTGTTTCTTCATTCTCTGCTTCTTCTTCTTTGGATCAGGAGCTGGACCTTGAGCTCAGACTT CTGCCGGAACCCCACCTGCTGTGGAGGCAAATTTTCAACAACTACTCCCAAACGAGGCCGTCCAGCTGGGATCAGGAGACCGCCTTCGCCGAGGACACCGCCGCCGCCGCCGTGTGGCCGCCCCGCTCCTACACCTGCAACTTCTGTATGCGCCAATTCCGGTCCGCCCAGGCTCTCGGTGGCCACATGAACGTTCACCGCCGGGACCGGGCCCGCCTCCAAAACGATCCCAGCCGTCCCTTCCGGCGGCCTACGCCTTCCCCCACCGTCAAATCTGCCACCTTTAACGGTCACGATGAAGATTCTTATAATTGCGTGAAAAATAATAATAAGAGATCTAAAGTTTGTGTTTCTTCATTCTCTGCTTCTTCTTCTTTGGATCAGGAGCTGGACCTTGAGCTCAGACTT LPEPHLLWRQIFNNYSQTRPSSWDQETAFAEDTAAAAVWPPRSYTCNFCMRQFRSAQALGGHMNVHRRDRARLQNDPSRPFRRPTPSPTVKSATFNGHDEDSYNCVKNNNKRSKVCVSSFSASSSLDQELDLELRL Homology
BLAST of MS017261 vs. NCBI nr
Match: XP_023542190.1 (zinc finger protein 10-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.4 bits (355), Expect = 5.9e-30 Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 0
BLAST of MS017261 vs. NCBI nr
Match: XP_022988302.1 (zinc finger protein 10-like [Cucurbita maxima]) HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29 Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0
BLAST of MS017261 vs. NCBI nr
Match: KAG6600035.1 (Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030703.1 Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29 Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0
BLAST of MS017261 vs. NCBI nr
Match: XP_004151402.2 (zinc finger protein 11 [Cucumis sativus] >KGN50575.1 hypothetical protein Csa_021472 [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 6.8e-26 Identity = 74/138 (53.62%), Postives = 88/138 (63.77%), Query Frame = 0
BLAST of MS017261 vs. NCBI nr
Match: XP_008461701.1 (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo] >KAA0050359.1 transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa] >TYK03572.1 transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa]) HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24 Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of MS017261 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 8.9e-21 Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 0
BLAST of MS017261 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14 Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of MS017261 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 8.1e-14 Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of MS017261 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2) HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13 Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 0
BLAST of MS017261 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0
BLAST of MS017261 vs. ExPASy TrEMBL
Match: A0A6J1JCP1 (zinc finger protein 10-like OS=Cucurbita maxima OX=3661 GN=LOC111485589 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 4.9e-30 Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0
BLAST of MS017261 vs. ExPASy TrEMBL
Match: A0A0A0KLQ3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G183770 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26 Identity = 74/138 (53.62%), Postives = 88/138 (63.77%), Query Frame = 0
BLAST of MS017261 vs. ExPASy TrEMBL
Match: A0A5A7UA35 (Transcriptional regulator SUPERMAN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00710 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 8.1e-25 Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of MS017261 vs. ExPASy TrEMBL
Match: A0A1S3CGM6 (transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103500239 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 8.1e-25 Identity = 76/144 (52.78%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of MS017261 vs. ExPASy TrEMBL
Match: D7LKF9 (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_902954 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18 Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 0
BLAST of MS017261 vs. TAIR 10
Match: AT2G37740.1 (zinc-finger protein 10 ) HSP 1 Score: 101.3 bits (251), Expect = 6.3e-22 Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 0
BLAST of MS017261 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 80.9 bits (198), Expect = 8.9e-16 Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of MS017261 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 4.4e-15 Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 0
BLAST of MS017261 vs. TAIR 10
Match: AT2G42410.1 (zinc finger protein 11 ) HSP 1 Score: 78.2 bits (191), Expect = 5.7e-15 Identity = 44/86 (51.16%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of MS017261 vs. TAIR 10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 75.5 bits (184), Expect = 3.7e-14 Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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