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MS017247 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCTGCTTCTTCAACATCCACAGCTGGATATTTTGGCTCTATTTTCCCACCACCGGTACTTCAATTTCAACTACTAGTTTTATTCTATTTTATTTTTTAATCTATCTTTCATACTCTCTCTCAATTAAGATGTGGATTTCCTGAACTGGGTCACTTTCAGCATTTGCTTGTTGATTTTGCATGTTTCAAGTTGATGATATGACAGCTTAAAACTAGGTTGAACAGAAATAAGAAAGCGTTCTAGTAAGGAAGCGAAGTAATGGAAGCTTAGTTTCCTTCTAATGCAGAAAAAAAATACTTGTTAAAATGGAAGCCAAAGTGGTCCTATTCTGATCCGTTGTGTGCAAATATAATTTTCTTGGTATTTATAAAGCAAGCTTTGAACTTTTCTTCTCTGGTTTTAGGTGGTGGAGAGGGAGAGAAAACAGGATGTTGGAGATCGAGTTGGCACTTGCAATGTTGGGAATCCAGGTTTTTTTCCCTTCAAAAACTAGAATATTAACAAAATTCCCTCACCAATGGATTAAGAAGCCTATGTCTATGTTTACCTGAGCAATCTCCCATAGTTCTCTCTGTTGACTAGCTTTGCAAATGTAATTAACTCCATGTTCTACTGGCTTTTGTTCCTCTCAGATAATGCTTCTTTAAATGGCAAGAATGGAACCGGTGGTGCAACTGGGAAAGATGCAAGCTCCATGTATCAGAATGAAACTATGGGACCAAGTTACTTTAGTTCCTCCATCCTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAAGGCCTCAGAATCCCACCATAATGTAAGCATTACTAGATGATCATTATGTCATCTTTTTGGTATTTTATGTTTTCGGGAGTGTTTGGGTAAAATTAGAAGGCTCTGTTTGGATCTTCACAGACAAATAGATTTGATAACGAGTGACATTGCTTTGGAAACTGTAACTGATTTATTGATTACTTGATTGCTACATACTGATGTTATGATCTCGATACTTGATCAGTTTAAAAAAGAAGGGAAAGACGACGAAGTAAACGGAGGCAATCCTAACTCTGTTTCAAGAGGAAACTGGTGGGAGGGTATGACAACTTCCATGGATTTACTGTTGAAAGACAAAGAGATGATGGTG ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCTGCTTCTTCAACATCCACAGCTGGATATTTTGGCTCTATTTTCCCACCACCGGTGGTGGAGAGGGAGAGAAAACAGGATGTTGGAGATCGAGTTGGCACTTGCAATGTTGGGAATCCAGATAATGCTTCTTTAAATGGCAAGAATGGAACCGGTGGTGCAACTGGGAAAGATGCAAGCTCCATGTATCAGAATGAAACTATGGGACCAAGTTACTTTAGTTCCTCCATCCTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAAGGCCTCAGAATCCCACCATAATTTTAAAAAAGAAGGGAAAGACGACGAAGTAAACGGAGGCAATCCTAACTCTGTTTCAAGAGGAAACTGGTGGGAGGGTATGACAACTTCCATGGATTTACTGTTGAAAGACAAAGAGATGATGGTG ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCTGCTTCTTCAACATCCACAGCTGGATATTTTGGCTCTATTTTCCCACCACCGGTGGTGGAGAGGGAGAGAAAACAGGATGTTGGAGATCGAGTTGGCACTTGCAATGTTGGGAATCCAGATAATGCTTCTTTAAATGGCAAGAATGGAACCGGTGGTGCAACTGGGAAAGATGCAAGCTCCATGTATCAGAATGAAACTATGGGACCAAGTTACTTTAGTTCCTCCATCCTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAAGGCCTCAGAATCCCACCATAATTTTAAAAAAGAAGGGAAAGACGACGAAGTAAACGGAGGCAATCCTAACTCTGTTTCAAGAGGAAACTGGTGGGAGGGTATGACAACTTCCATGGATTTACTGTTGAAAGACAAAGAGATGATGGTG MENKKQVAASSSSSLDHLFGPMDSNSASSTSTAGYFGSIFPPPVVERERKQDVGDRVGTCNVGNPDNASLNGKNGTGGATGKDASSMYQNETMGPSYFSSSILYGGQENYSPRTKASESHHNFKKEGKDDEVNGGNPNSVSRGNWWEGMTTSMDLLLKDKEMMV Homology
BLAST of MS017247 vs. NCBI nr
Match: XP_022139159.1 (uncharacterized protein LOC111010132 [Momordica charantia]) HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74 Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0
BLAST of MS017247 vs. NCBI nr
Match: XP_038892195.1 (uncharacterized protein LOC120081420 isoform X1 [Benincasa hispida]) HSP 1 Score: 251.9 bits (642), Expect = 3.8e-63 Identity = 127/165 (76.97%), Postives = 144/165 (87.27%), Query Frame = 0
BLAST of MS017247 vs. NCBI nr
Match: KAA0051570.1 (TPRXL protein [Cucumis melo var. makuwa] >TYK21253.1 TPRXL protein [Cucumis melo var. makuwa]) HSP 1 Score: 235.3 bits (599), Expect = 3.6e-58 Identity = 119/151 (78.81%), Postives = 132/151 (87.42%), Query Frame = 0
BLAST of MS017247 vs. NCBI nr
Match: XP_038892196.1 (uncharacterized protein LOC120081420 isoform X2 [Benincasa hispida]) HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57 Identity = 118/149 (79.19%), Postives = 131/149 (87.92%), Query Frame = 0
BLAST of MS017247 vs. NCBI nr
Match: XP_008464894.1 (PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903275.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903276.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903277.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903278.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo]) HSP 1 Score: 231.5 bits (589), Expect = 5.3e-57 Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 0
BLAST of MS017247 vs. ExPASy TrEMBL
Match: A0A6J1CC52 (uncharacterized protein LOC111010132 OS=Momordica charantia OX=3673 GN=LOC111010132 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74 Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 0
BLAST of MS017247 vs. ExPASy TrEMBL
Match: A0A5A7U8T9 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00020 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58 Identity = 119/151 (78.81%), Postives = 132/151 (87.42%), Query Frame = 0
BLAST of MS017247 vs. ExPASy TrEMBL
Match: A0A1S4E4X0 (uncharacterized protein LOC103502653 OS=Cucumis melo OX=3656 GN=LOC103502653 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 2.5e-57 Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 0
BLAST of MS017247 vs. ExPASy TrEMBL
Match: A0A0A0KNZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G188900 PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56 Identity = 116/148 (78.38%), Postives = 128/148 (86.49%), Query Frame = 0
BLAST of MS017247 vs. ExPASy TrEMBL
Match: A0A6J1K7H1 (uncharacterized protein LOC111491851 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491851 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48 Identity = 110/148 (74.32%), Postives = 118/148 (79.73%), Query Frame = 0
BLAST of MS017247 vs. TAIR 10
Match: AT3G55646.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17 Identity = 62/153 (40.52%), Postives = 87/153 (56.86%), Query Frame = 0
BLAST of MS017247 vs. TAIR 10
Match: AT2G39855.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16 Identity = 64/151 (42.38%), Postives = 83/151 (54.97%), Query Frame = 0
BLAST of MS017247 vs. TAIR 10
Match: AT5G05965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12 Identity = 57/151 (37.75%), Postives = 76/151 (50.33%), Query Frame = 0
BLAST of MS017247 vs. TAIR 10
Match: AT2G39855.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 51/117 (43.59%), Postives = 63/117 (53.85%), Query Frame = 0
BLAST of MS017247 vs. TAIR 10
Match: AT5G59080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 5.7e-09 Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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