Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATCAATGGACTTGATTTCTGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTGGTTCTTCTCCTCATGCTCTCTGCTTCTCTCCCCAGTGATGTGCAGAACTCTGCCCTCTTCAACCTCAACTTTGAGTTCTTCCTTTTTGATCCCTGGGAGATCCGCGGTGAAGACGTGGCCTTGTGGGGTCTCCTTCCAGTCGATGCCAAAAGCAGAGACTTCGCCGGCGAAGGAAGGGGCAATGCCCATTGAGTTTGAGAACGGAAACCCATCAAATGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGAGACATCGTG
mRNA sequence
ATATCAATGGACTTGATTTCTGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTGGTTCTTCTCCTCATGCTCTCTGCTTCTCTCCCCAGTGATGTGCAGAACTCTGCCCTCTTCAACCTCAACTTTGAGTTCTTCCTTTTTGATCCCTGGGAGATCCGCGGTGAAGACGTGGCCTTGTGGGGTCTCCTTCCAGTCGATGCCAAAAGCAGAGACTTCGCCGGCGAAGGAAGGGGCAATGCCCATTGAGTTTGAGAACGGAAACCCATCAAATGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGAGACATCGTG
Coding sequence (CDS)
ATATCAATGGACTTGATTTCTGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTGGTTCTTCTCCTCATGCTCTCTGCTTCTCTCCCCAGTGATGTGCAGAACTCTGCCCTCTTCAACCTCAACTTTGAGTTCTTCCTTTTTGATCCCTGGGAGATCCGCGGTGAAGACGTGGCCTTGTGGGGTCTCCTTCCAGTCGATGCCAAAAGCAGAGACTTCGCCGGCGAAGGAAGGGGCAATGCCCATTGAGTTTGAGAACGGAAACCCATCAAATGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGAGACATCGTG
Protein sequence
ISMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCSLLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSMPKAETSPAKEGAMPIEFENGNPSNGSKMLLRRPPKMLGIRDIV
Homology
BLAST of MS017242 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 90/154 (58.44%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHL FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSMPKAETSPAKEGAMPIEFE 122
LLLSP++C+ LPSSTST +SSF PGRSA+ TW GVSFQS+ + G + FE
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLGVL-TAFE 120
Query: 123 NGNPSNGSK---------MLLRRPPKMLGIRDIV 148
NGNP GS+ L RPPK LGIR+I+
Sbjct: 121 NGNPWKGSQKSRENGSGTWLRERPPKKLGIREIL 153
BLAST of MS017242 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 88/151 (58.28%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+ F SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQS---MPKAETSPAKEGAMPIEFEN 126
P++C+ L SSTST +SSFLIPGRSA+KT GVSFQS KAE S + + P E
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVS--LQESDPDEVGK 272
Query: 127 G--------NPSNGSKMLLRRPPKMLGIRDI 147
G + +NGSKML RRPPK LG+ DI
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017242 vs. NCBI nr
Match:
RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 129.0 bits (323), Expect = 3.3e-26
Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = 0
Query: 1 ISMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSS 60
+SM L+SGF + LGTVTV TPFS+ AFTSSTLAFSG+LN L N PLL S CHL FFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSLLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQS---MPKAETS 111
SLLLSP++ RTLPSS+ST +SSF PGRSA+KTW GVSFQS + KA+ S
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
BLAST of MS017242 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 127.5 bits (319), Expect = 9.6e-26
Identity = 84/157 (53.50%), Postives = 96/157 (61.15%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCS 62
MDL SGF + LGTVTV TPFSM AFT STLAFSG NL N PLLRS C + FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 LLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSMPKAETSPAKEGAMPIEFE 122
L SP++ RT PSSTST++SSFL PG+SA+ T GVSFQS A + A G + E E
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTVAGEKE 120
Query: 123 ----NGNP--------SNGSKMLLRRPPKMLGIRDIV 148
G P GSKM RR P G+ DI+
Sbjct: 121 REVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017242 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 79/131 (60.31%), Postives = 87/131 (66.41%), Query Frame = 0
Query: 1 ISMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSS 60
ISM SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHL F SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSMPKAETSPAKEGAMPIE 120
SLL P++ TLPSSTST +SSFL PGRSA+KT GVSFQS + +
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEVAGT 139
Query: 121 FENGNPSNGSK 132
E PS GS+
Sbjct: 140 RERKTPSKGSQ 150
BLAST of MS017242 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 122/158 (77.22%), Postives = 133/158 (84.18%), Query Frame = 0
Query: 1 ISMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSS 60
+SMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHL FFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSLLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSM---PKAETSPAKEGAM 120
CSLLLSP++C+TLPSSTSTL+SSFLIPGRSA+K W CGVSFQSM KAE S A+EGA+
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 PIEFENGNPSNGSKM--------LLRRPPKMLGIRDIV 148
EFE G PS GS+M LLRRPPKMLG R +V
Sbjct: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMV 158
BLAST of MS017242 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 90/154 (58.44%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHL FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQSMPKAETSPAKEGAMPIEFE 122
LLLSP++C+ LPSSTST +SSF PGRSA+ TW GVSFQS+ + G + FE
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLGVL-TAFE 120
Query: 123 NGNPSNGSK---------MLLRRPPKMLGIRDIV 148
NGNP GS+ L RPPK LGIR+I+
Sbjct: 121 NGNPWKGSQKSRENGSGTWLRERPPKKLGIREIL 153
BLAST of MS017242 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 90/157 (57.32%), Postives = 103/157 (65.61%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCS 62
M SGFFSS LGTVTV TPFS+ AFTSS LAFSG N N PL RS CHL FFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 LLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQS---MPKAETSPAKEGAMPI 122
L+LSP++ R LPSSTST +SSFL PGRS + TW GVSFQS + + S A E +
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELGCTL 120
Query: 123 E-FENGNPSNGSK--------MLLRRPPKMLGIRDIV 148
E E+ NPSNGS+ L+ R PK LGI D+V
Sbjct: 121 ERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017242 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 9.0e-30
Identity = 88/151 (58.28%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+ F SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQS---MPKAETSPAKEGAMPIEFEN 126
P++C+ L SSTST +SSFLIPGRSA+KT GVSFQS KAE S + + P E
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVS--LQESDPDEVGK 272
Query: 127 G--------NPSNGSKMLLRRPPKMLGIRDI 147
G + +NGSKML RRPPK LG+ DI
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017242 vs. ExPASy TrEMBL
Match:
A0A443Q2S3 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02676000 PE=4 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = 0
Query: 1 ISMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLWFFSS 60
+SM L+SGF + LGTVTV TPFS+ AFTSSTLAFSG+LN L N PLL S CHL FFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSLLLSPVMCRTLPSSTSTLSSSFLIPGRSAVKTWPCGVSFQS---MPKAETS 111
SLLLSP++ RTLPSS+ST +SSF PGRSA+KTW GVSFQS + KA+ S
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
VFQ82571.1 | 2.6e-31 | 58.44 | unnamed protein product [Cuscuta campestris] | [more] |
KVI11914.1 | 1.9e-29 | 58.28 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
RWR97332.1 | 3.3e-26 | 67.26 | hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae] | [more] |
CAG1834096.1 | 9.6e-26 | 53.50 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
BAS70261.1 | 2.1e-25 | 60.31 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 3.4e-53 | 77.22 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A484M1B1 | 1.3e-31 | 58.44 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A7C9D9Y3 | 6.9e-30 | 57.32 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A103YMN4 | 9.0e-30 | 58.28 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A443Q2S3 | 1.6e-26 | 67.26 | Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... | [more] |
Match Name | E-value | Identity | Description | |