Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCTTCAACTTTGGCATTCTCCGGCAGCCGGAATCTCCTCATGAACTTTCCACTGCTTCGTTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAAGGGGCATTGGCCAATGCGGTGGAATTGGAAAATGGGAAGCCATCGAGCGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
mRNA sequence
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCTTCAACTTTGGCATTCTCCGGCAGCCGGAATCTCCTCATGAACTTTCCACTGCTTCGTTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAAGGGGCATTGGCCAATGCGGTGGAATTGGAAAATGGGAAGCCATCGAGCGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Coding sequence (CDS)
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCTTCAACTTTGGCATTCTCCGGCAGCCGGAATCTCCTCATGAACTTTCCACTGCTTCGTTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAAGGGGCATTGGCCAATGCGGTGGAATTGGAAAATGGGAAGCCATCGAGCGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTTCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Protein sequence
MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDMLLQI
Homology
BLAST of MS017241 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGSRN N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALAN 122
LLLSPLIC+ LPSSTSTFTSSF PGRSAL W GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENG P GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017241 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 98/153 (64.05%), Postives = 111/153 (72.55%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+ NLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALK A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM 160
GK +GS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017241 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 154.8 bits (390), Expect = 6.2e-34
Identity = 100/160 (62.50%), Postives = 107/160 (66.88%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF + LGTVTV TPFSM AFT STLAFSG RNL N PLLRS C +S FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALAN 122
L SPLI RT PSSTST TSSFL PG+SAL A GVSFQS R A A +A G +A
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMA---DASPGTVAG 120
Query: 123 AVELE--NGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML 161
E E GKP GS S EKGSKM RR P G+SD+L
Sbjct: 121 EKEREVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017241 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 149.1 bits (375), Expect = 3.4e-32
Identity = 100/157 (63.69%), Postives = 107/157 (68.15%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTV TPFSMLAFT STLAFSGS N MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGAL 120
SLL PLI TLPSSTSTFTSSFL PGRSALK GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017241 vs. NCBI nr
Match:
KAB8079852.1 (hypothetical protein EE612_000127, partial [Oryza sativa])
HSP 1 Score: 147.9 bits (372), Expect = 7.6e-32
Identity = 99/157 (63.06%), Postives = 106/157 (67.52%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSS 60
+SM SG +S LGTVTV TPFSMLAFT STLAFSGSRN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGLLTSALGTVTVSTPFSMLAFTWSTLAFSGSRNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGAL 120
SLL PLI TLPSSTSTFTSSF PGRSALK GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFFTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERRTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017241 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63
Identity = 139/162 (85.80%), Postives = 146/162 (90.12%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSS 60
MSMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGS NLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGAL 120
CSLLLSPLIC+TLPSSTST TSSFLIPGRSALKMWACGVSFQS+RVLAKAEVS AEEGAL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDMLLQ 163
A E E GKPS GS S+EKGSK LLRRPPKMLG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017241 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 6.9e-39
Identity = 105/159 (66.04%), Postives = 112/159 (70.44%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCS 62
M SGFFSS LGTVTV TPFS+ AFTSS LAFSG RN N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEE-GALA 122
L+LSPLI R LPSSTSTFTSSFL PGRS L WA GVSFQS VL +VS A E G
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELGCTL 120
Query: 123 NAVELENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDML 161
E +N PS+GS TS E GS L+ R PK LGISDM+
Sbjct: 121 ERAEDKN--PSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017241 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGSRN N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALAN 122
LLLSPLIC+ LPSSTSTFTSSF PGRSAL W GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGKPSSGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENG P GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017241 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.5e-37
Identity = 98/153 (64.05%), Postives = 111/153 (72.55%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+ NLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSEAEEGALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALK A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGKPSSGSHTSSEKGSKMLLRRPPKMLGISDM 160
GK +GS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017241 vs. ExPASy TrEMBL
Match:
A0A0D9Z549 (SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 101/161 (62.73%), Postives = 109/161 (67.70%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSRNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF S LGTVTV TPFSM A S L FSGSRNL N PLLRS CHLS FSSCS
Sbjct: 1 MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHLSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSIRVLAKAEVSE----AEEG 122
LL SPLICR LPSSTST TSSF PG SAL A GVSFQS+R AKA VSE ++G
Sbjct: 61 LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVPRGKDG 120
Query: 123 ALANAVEL--ENGKPSSGSHTSSEKGSKMLLRRPPKMLGIS 158
+ + L GKPS GS S EKGS MLLRR ++GI+
Sbjct: 121 KMLPLLLLPEPKGKPSKGSQRSREKGSNMLLRRIIDIVGIA 161
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| VFQ82571.1 | 1.6e-37 | 65.22 | unnamed protein product [Cuscuta campestris] | [more] |
| KVI11914.1 | 1.7e-36 | 64.05 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
| CAG1834096.1 | 6.2e-34 | 62.50 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
| BAS70261.1 | 3.4e-32 | 63.69 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
| KAB8079852.1 | 7.6e-32 | 63.06 | hypothetical protein EE612_000127, partial [Oryza sativa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KSC0 | 2.4e-63 | 85.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
| A0A7C9D9Y3 | 6.9e-39 | 66.04 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
| A0A484M1B1 | 7.7e-38 | 65.22 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
| A0A103YMN4 | 8.5e-37 | 64.05 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
| A0A0D9Z549 | 1.4e-34 | 62.73 | SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
