Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
mRNA sequence
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Coding sequence (CDS)
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Protein sequence
MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDMLLQI
Homology
BLAST of MS017239 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 167.5 bits (423), Expect = 9.3e-38
Identity = 100/153 (65.36%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDM 160
G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017239 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLSPLIC+ LPSSTSTFTSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017239 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 152.5 bits (384), Expect = 3.1e-33
Identity = 101/157 (64.33%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
S L PLI TLPSSTSTFTSSFL PGRSALKT GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017239 vs. NCBI nr
Match:
RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSM L+SGF + LGTVTV TPFS+ AFTSSTLAFSG+LN L N PLL S CHLSFFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVS 114
S LLSPLI RTLPSS+STFTSSF PGRSALKTWA GVSFQSI+ L KA+VS
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
BLAST of MS017239 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 149.4 bits (376), Expect = 2.6e-32
Identity = 97/158 (61.39%), Postives = 104/158 (65.82%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF + LGTVTV TPFSM AFT STLAFSG NL N PLLRS C +S FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L SPLI RT PSSTST TSSFL PG+SAL T A GVSFQS R A A+ S A
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEK 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDML 161
E+ G P GS S EKGSKM RR P G+SD+L
Sbjct: 121 EREVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017239 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 245.4 bits (625), Expect = 1.7e-61
Identity = 136/162 (83.95%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
CS LLSPLIC+TLPSSTST TSSFLIPGRSALK WACGVSFQS+RVLAKAEVS AEE AL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDMLLQ 163
A E E G PS GS S+EKGSK LLRRPPKMLG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017239 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 104/158 (65.82%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M SGFFSS LGTVTV TPFS+ AFTSS LAFSG N N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
+LSPLI R LPSSTSTFTSSFL PGRS L TWA GVSFQS VL +VS A E
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELG-CT 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDML 161
E+ NPSNGS TS E GS L+ R PK LGISDM+
Sbjct: 121 LERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017239 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 100/153 (65.36%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDM 160
G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017239 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLSPLIC+ LPSSTSTFTSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017239 vs. ExPASy TrEMBL
Match:
A0A0P0UXN9 (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0136050 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 101/157 (64.33%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
S L PLI TLPSSTSTFTSSFL PGRSALKT GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KVI11914.1 | 9.3e-38 | 65.36 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 1.6e-37 | 65.22 | unnamed protein product [Cuscuta campestris] | [more] |
BAS70261.1 | 3.1e-33 | 64.33 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
RWR97332.1 | 1.5e-32 | 76.11 | hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae] | [more] |
CAG1834096.1 | 2.6e-32 | 61.39 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 1.7e-61 | 83.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A7C9D9Y3 | 1.8e-39 | 65.82 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A103YMN4 | 4.5e-38 | 65.36 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A484M1B1 | 7.7e-38 | 65.22 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0P0UXN9 | 1.5e-33 | 64.33 | Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... | [more] |
Match Name | E-value | Identity | Description | |