MS017238 (gene) Bitter gourd (TR) v1

Overview


Name	MS017238
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	17.8 kDa class I heat shock protein-like
Location	scaffold33: 884986 .. 885468 (-)
RNA-Seq Expression	MS017238
Synteny	MS017238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTGATTCCAAGCATTTTCGGTGGCCGCCGCAGCAACATCTTCGACCCCTTCTCACTGGATGTATGGGATCCGTTCGATGGGTTCCCATTTTCCAATTCCACCGCATTGGCCAACGCCCATTCCTCCGCTTCGGAAACCTCTGCTTTTGCCAACACTCGAATCGACTGGAAGGAGACCCCACAAGCCCACGTCTTCAAGGCCGATCTTCCAGGGATCAAAAAGGAGGAAGTGAAAGTGGAGGTTGAAGAAGGAAGAGTTCTGCAGATCAGTGGGGAGAGAAGGAAAGAGCAGGAGGAGAAGAACGACAAGTGGCACAGAATCGAGCGGAGCAGTGGAAAGTTCATGAGGAGATTCAGGCTGCCGGAGAATGCCAAAGTTGAGGAGGTGAAGGCCAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCCATTGACATCTCTGGT

mRNA sequence

ATGTCGCTGATTCCAAGCATTTTCGGTGGCCGCCGCAGCAACATCTTCGACCCCTTCTCACTGGATGTATGGGATCCGTTCGATGGGTTCCCATTTTCCAATTCCACCGCATTGGCCAACGCCCATTCCTCCGCTTCGGAAACCTCTGCTTTTGCCAACACTCGAATCGACTGGAAGGAGACCCCACAAGCCCACGTCTTCAAGGCCGATCTTCCAGGGATCAAAAAGGAGGAAGTGAAAGTGGAGGTTGAAGAAGGAAGAGTTCTGCAGATCAGTGGGGAGAGAAGGAAAGAGCAGGAGGAGAAGAACGACAAGTGGCACAGAATCGAGCGGAGCAGTGGAAAGTTCATGAGGAGATTCAGGCTGCCGGAGAATGCCAAAGTTGAGGAGGTGAAGGCCAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCCATTGACATCTCTGGT

Coding sequence (CDS)

ATGTCGCTGATTCCAAGCATTTTCGGTGGCCGCCGCAGCAACATCTTCGACCCCTTCTCACTGGATGTATGGGATCCGTTCGATGGGTTCCCATTTTCCAATTCCACCGCATTGGCCAACGCCCATTCCTCCGCTTCGGAAACCTCTGCTTTTGCCAACACTCGAATCGACTGGAAGGAGACCCCACAAGCCCACGTCTTCAAGGCCGATCTTCCAGGGATCAAAAAGGAGGAAGTGAAAGTGGAGGTTGAAGAAGGAAGAGTTCTGCAGATCAGTGGGGAGAGAAGGAAAGAGCAGGAGGAGAAGAACGACAAGTGGCACAGAATCGAGCGGAGCAGTGGAAAGTTCATGAGGAGATTCAGGCTGCCGGAGAATGCCAAAGTTGAGGAGGTGAAGGCCAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCCATTGACATCTCTGGT

Protein sequence

MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKETPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG

Homology

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BLAST of MS017238 vs. NCBI nr
Match: XP_022138990.1 (17.8 kDa class I heat shock protein-like isoform X1 [Momordica charantia] >XP_022138991.1 17.8 kDa class I heat shock protein-like isoform X2 [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSN TALANAHSSASETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNCTALANAHSSASETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGER +EQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERSREQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

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BLAST of MS017238 vs. NCBI nr
Match: XP_022139109.1 (18.1 kDa class I heat shock protein-like [Momordica charantia] >XP_022159337.1 18.1 kDa class I heat shock protein-like [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDP DGFPFSNSTALANA SSASETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPLDGFPFSNSTALANAPSSASETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

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BLAST of MS017238 vs. NCBI nr
Match: XP_022138993.1 (17.3 kDa class I heat shock protein-like [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 155/161 (96.27%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDPF+GFPF NSTALANAHSSASETSAFA+TRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFEGFPFPNSTALANAHSSASETSAFASTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPGIKKEEVKVEVEEGRVLQISGER +EQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPEAHVFKADLPGIKKEEVKVEVEEGRVLQISGERSREQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

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BLAST of MS017238 vs. NCBI nr
Match: XP_004150235.2 (18.1 kDa class I heat shock protein [Cucumis sativus] >KGN50620.1 hypothetical protein Csa_021481 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 4.6e-74
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           M+L+PSIFGGRRSN+FDPFSLD+WDPF+GFPFSNS  LANA SSA ETSAFANTRIDWKE
Sbjct: 1   MALVPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNS--LANAPSSARETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHRIERS GKFMRRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTV VPKMEEKKPEIKSIDI+G
Sbjct: 121 RLPENAKVEEVKASMENGVLTVMVPKMEEKKPEIKSIDIAG 159

[Close]

BLAST of MS017238 vs. NCBI nr
Match: XP_008465538.1 (PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo] >KAA0051493.1 17.6 kDa class I heat shock protein 3-like [Cucumis melo var. makuwa] >TYK22768.1 17.6 kDa class I heat shock protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.1e-74
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSN+FDPFSLD+WDPF+GFPFSNS  LAN  SSA ETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNS--LANVPSSAVETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHR+ERSSGKF RRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFTRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKA+MENGVLTVTVPK+EEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKANMENGVLTVTVPKVEEKKPEIKSIDISG 159

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BLAST of MS017238 vs. ExPASy Swiss-Prot
Match: P19037 (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.7e-66
Identity = 128/161 (79.50%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSN+FDPFS D+WDPF+GF F+ S+ALANA S+A + +AF N R+DWKE
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSQDLWDPFEGF-FTPSSALANA-STARDVAAFTNARVDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPG+KKEEVKVEVE+  VLQISGER KE EEKNDKWHR+ER+SGKFMRRF
Sbjct: 61  TPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAK+EEVKA+MENGVLTV VPK  EKKP++KSIDISG
Sbjct: 121 RLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

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BLAST of MS017238 vs. ExPASy Swiss-Prot
Match: P27396 (17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.4e-65
Identity = 125/161 (77.64%), Postives = 141/161 (87.58%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MS+IPS FGGRRSN+FDPFSLDVWDPF  FP   S    +A     ET+AF NT IDWKE
Sbjct: 1   MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTS----SASEFGKETAAFVNTHIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAHVFKADLPG+KKEEVKVE+EEG+VLQISGER KE+EEKNDKWHR+ERSSGKF+RRF
Sbjct: 61  TPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKV+EVKA+M NGV+TVTVPK+E KKPE+K+IDISG
Sbjct: 121 RLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

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BLAST of MS017238 vs. ExPASy Swiss-Prot
Match: P27880 (18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.2e-64
Identity = 124/161 (77.02%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPS FGGRRSN+FDPFSLDVWDPF  FPF+NS   A   S   E SAF +TR+DWKE
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSA---SFPRENSAFVSTRVDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPG+KKEEVKVE+E+ RVLQISGER  E+E+KND+WHR+ERSSGKFMRRF
Sbjct: 61  TPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAK+++VKA+MENGVLTVTVPK E KKPE+K+IDISG
Sbjct: 121 RLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

[Close]

BLAST of MS017238 vs. ExPASy Swiss-Prot
Match: P05478 (18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.9e-64
Identity = 118/161 (73.29%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIP+ FGGRR+N+FDPFSLDVWDPF  FPF N+ + A+    + E SAF +TR+DWKE
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKAD+PG+KKEEVKV++E+ +VLQISGER  E+E+KND WHR+ERSSGKFMRRF
Sbjct: 61  TPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVE+VKASMENGVLTVTVPK E KKP++K+I+ISG
Sbjct: 121 RLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

[Close]

BLAST of MS017238 vs. ExPASy Swiss-Prot
Match: P13853 (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 8.5e-63
Identity = 121/161 (75.16%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRR+N+FDPFSLDV+DPF+G  F   + LANA   A + +AF N ++DW+E
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEG--FLTPSGLANA--PAMDVAAFTNAKVDWRE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPG++KEEVKVEVE+G +LQISGER  E EEKNDKWHR+ERSSGKF RRF
Sbjct: 61  TPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAK+EE+KASMENGVL+VTVPK+ EKKPE+KSIDISG
Sbjct: 121 RLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of MS017238 vs. ExPASy TrEMBL
Match: A0A6J1CB17 (17.8 kDa class I heat shock protein-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010034 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSN TALANAHSSASETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNCTALANAHSSASETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGER +EQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERSREQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

[Close]

BLAST of MS017238 vs. ExPASy TrEMBL
Match: A0A6J1CC00 (18.1 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC111010100 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDP DGFPFSNSTALANA SSASETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPLDGFPFSNSTALANAPSSASETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

[Close]

BLAST of MS017238 vs. ExPASy TrEMBL
Match: A0A6J1CEM2 (17.3 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC111010035 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.0e-79
Identity = 155/161 (96.27%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSNIFDPFSLDVWDPF+GFPF NSTALANAHSSASETSAFA+TRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFEGFPFPNSTALANAHSSASETSAFASTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPGIKKEEVKVEVEEGRVLQISGER +EQEEKNDKWHRIERSSGKFMRRF
Sbjct: 61  TPEAHVFKADLPGIKKEEVKVEVEEGRVLQISGERSREQEEKNDKWHRIERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161

[Close]

BLAST of MS017238 vs. ExPASy TrEMBL
Match: A0A0A0KLU0 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G197620 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           M+L+PSIFGGRRSN+FDPFSLD+WDPF+GFPFSNS  LANA SSA ETSAFANTRIDWKE
Sbjct: 1   MALVPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNS--LANAPSSARETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHRIERS GKFMRRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVLTV VPKMEEKKPEIKSIDI+G
Sbjct: 121 RLPENAKVEEVKASMENGVLTVMVPKMEEKKPEIKSIDIAG 159

[Close]

BLAST of MS017238 vs. ExPASy TrEMBL
Match: A0A5D3DH18 (17.6 kDa class I heat shock protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75208G00010 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSN+FDPFSLD+WDPF+GFPFSNS  LAN  SSA ETSAFANTRIDWKE
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNS--LANVPSSAVETSAFANTRIDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TPQAH+FKADLPGIKKEEVKVEVEEGRVLQISGER KEQEEKNDKWHR+ERSSGKF RRF
Sbjct: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFTRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKA+MENGVLTVTVPK+EEKKPEIKSIDISG
Sbjct: 121 RLPENAKVEEVKANMENGVLTVTVPKVEEKKPEIKSIDISG 159

[Close]

BLAST of MS017238 vs. TAIR 10
Match: AT5G59720.1 (heat shock protein 18.2 )

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-67
Identity = 128/161 (79.50%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRRSN+FDPFS D+WDPF+GF F+ S+ALANA S+A + +AF N R+DWKE
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSQDLWDPFEGF-FTPSSALANA-STARDVAAFTNARVDWKE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPG+KKEEVKVEVE+  VLQISGER KE EEKNDKWHR+ER+SGKFMRRF
Sbjct: 61  TPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAK+EEVKA+MENGVLTV VPK  EKKP++KSIDISG
Sbjct: 121 RLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

[Close]

BLAST of MS017238 vs. TAIR 10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 241.1 bits (614), Expect = 6.1e-64
Identity = 121/161 (75.16%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSLIPSIFGGRR+N+FDPFSLDV+DPF+G  F   + LANA   A + +AF N ++DW+E
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEG--FLTPSGLANA--PAMDVAAFTNAKVDWRE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKADLPG++KEEVKVEVE+G +LQISGER  E EEKNDKWHR+ERSSGKF RRF
Sbjct: 61  TPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAK+EE+KASMENGVL+VTVPK+ EKKPE+KSIDISG
Sbjct: 121 RLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of MS017238 vs. TAIR 10
Match: AT3G46230.1 (heat shock protein 17.4 )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 118/161 (73.29%), Postives = 140/161 (86.96%), Query Frame = 0


Query: 1   MSLIPSIFGGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWKE 60
           MSL+PS FGGRR+N+FDPFSLDVWDPF+GF    +  L NA   A + +AF N ++DW+E
Sbjct: 1   MSLVPSFFGGRRTNVFDPFSLDVWDPFEGF---LTPGLTNA--PAKDVAAFTNAKVDWRE 60

Query: 61  TPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRRF 120
           TP+AHVFKAD+PG+KKEEVKVEVE+G +LQISGER  E EEK+D WHR+ERSSGKFMRRF
Sbjct: 61  TPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRF 120

Query: 121 RLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           RLPENAKVEEVKASMENGVL+VTVPK++E KPE+KS+DISG
Sbjct: 121 RLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156

[Close]

BLAST of MS017238 vs. TAIR 10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-54
Identity = 109/162 (67.28%), Postives = 127/162 (78.40%), Query Frame = 0


Query: 1   MSLIPSIF-GGRRSNIFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDWK 60
           MS+IPS F   RRSNIFDPFSLDVWDPF     S         S + E SA  N R+DW+
Sbjct: 1   MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSS---------SLSRENSAIVNARVDWR 60

Query: 61  ETPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMRR 120
           ETP+AHVFKADLPG+KKEEVKVE+EE  VL+ISGER  E+E+KND WHR+ERSSG+F RR
Sbjct: 61  ETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRR 120

Query: 121 FRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 162
           FRLPEN K+++VKA+MENGVLTVTVPK E KK ++KSI ISG
Sbjct: 121 FRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153

[Close]

BLAST of MS017238 vs. TAIR 10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-53
Identity = 112/165 (67.88%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MSLIPSIFG-GRRSN-IFDPFSLDVWDPFDGFPFSNSTALANAHSSASETSAFANTRIDW 60
           MSLIPS FG  RRSN IFDPFSLDVWDPF    F +S         + ETSA  N R+DW
Sbjct: 1   MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSL--------SGETSAITNARVDW 60

Query: 61  KETPQAHVFKADLPGIKKEEVKVEVEEGRVLQISGERRKEQEEKNDKWHRIERSSGKFMR 120
           KET +AHVFKADLPG+KKEEVKVE+E+  VL+ISGER  E+EEK D WHR+ERSSG+F R
Sbjct: 61  KETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSR 120

Query: 121 RFRLPENAKVEEVKASMENGVLTVTVPKMEE--KKPEIKSIDISG 162
           +F+LPEN K+++VKASMENGVLTVTVPK+EE  KK ++KSIDISG
Sbjct: 121 KFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157

The following BLAST results are available for this feature:

BLAST of MS017238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138990.1	2.5e-80	98.14	17.8 kDa class I heat shock protein-like isoform X1 [Momordica charantia] >XP_02...	[more]
XP_022139109.1	2.8e-79	97.52	18.1 kDa class I heat shock protein-like [Momordica charantia] >XP_022159337.1 1...	[more]
XP_022138993.1	6.3e-79	96.27	17.3 kDa class I heat shock protein-like [Momordica charantia]	[more]
XP_004150235.2	4.6e-74	91.30	18.1 kDa class I heat shock protein [Cucumis sativus] >KGN50620.1 hypothetical p...	[more]
XP_008465538.1	6.1e-74	91.30	PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo] >KAA0051493...	[more]

BLAST of MS017238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19037	3.7e-66	79.50	18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 P...	[more]
P27396	2.4e-65	77.64	17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1	[more]
P27880	1.2e-64	77.02	18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 S...	[more]
P05478	5.9e-64	73.29	18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=...	[more]
P13853	8.5e-63	75.16	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]

BLAST of MS017238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CB17	1.2e-80	98.14	17.8 kDa class I heat shock protein-like isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1CC00	1.4e-79	97.52	18.1 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CEM2	3.0e-79	96.27	17.3 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0KLU0	2.2e-74	91.30	SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G197620 PE=3 S...	[more]
A0A5D3DH18	2.9e-74	91.30	17.6 kDa class I heat shock protein 3-like OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of MS017238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59720.1	2.6e-67	79.50	heat shock protein 18.2	[more]
AT1G53540.1	6.1e-64	75.16	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	1.4e-63	73.29	heat shock protein 17.4	[more]
AT2G29500.1	4.4e-54	67.28	HSP20-like chaperones superfamily protein	[more]
AT1G07400.1	2.2e-53	67.88	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 9..161 e-value: 2.2E-53 score: 182.0
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 25..161
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 57..160 e-value: 1.8E-31 score: 108.3
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 47..161 score: 32.149403
None	No IPR available	PANTHER	PTHR11527:SF336	SUBFAMILY NOT NAMED	coord: 2..161
None	No IPR available	CDD	cd06472	ACD_ScHsp26_like	coord: 55..146 e-value: 6.66284E-50 score: 153.615
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 2..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017238.1	MS017238.1	mRNA