Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGCACTCCATTCTCTATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTAATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCTGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATTTTGATGAAATTGGAGGACTCAGAGAGAGGGATTGTGGATTTGATTGATGGATTGGAAATTGGGGGA
mRNA sequence
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGCACTCCATTCTCTATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTAATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCTGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATTTTGATGAAATTGGAGGACTCAGAGAGAGGGATTGTGGATTTGATTGATGGATTGGAAATTGGGGGA
Coding sequence (CDS)
ATGTCAATGGACTTGATTTCTGGTTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGCACTCCATTCTCTATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTAATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCTGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATTTTGATGAAATTGGAGGACTCAGAGAGAGGGATTGTGGATTTGATTGATGGATTGGAAATTGGGGGA
Protein sequence
MSMDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKMLLRRPPKMLGISDMLLQILMKLEDSERGIVDLIDGLEIGG
Homology
BLAST of MS017236 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 171.8 bits (434), Expect = 5.6e-39
Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 7 SGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV VSTPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTST TSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGKPSNGSQTSSEKGSKMLLRRPPKMLGISDM 160
G GK NGSQ S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017236 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 161.8 bits (408), Expect = 5.8e-36
Identity = 106/166 (63.86%), Postives = 112/166 (67.47%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTVSTPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTST TSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLR-RPPKMLGISDMLLQILMKL 168
NG P GSQ S E GS LR RPPK LGI ++L Q +L
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQTKREL 160
BLAST of MS017236 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 100/158 (63.29%), Postives = 108/158 (68.35%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF + LGTVTVSTPFSM AFT STLAFSG NL N PLLRS C +S FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L SPLI RT PSSTST+TSSFL PG+SAL T A GVSFQS R A A+ S A
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEK 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLRRPPKMLGISDML 161
E+ GKP GSQ S EKGSKM RR P G+SD+L
Sbjct: 121 EREVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017236 vs. NCBI nr
Match:
CAB3496390.1 (unnamed protein product [Digitaria exilis])
HSP 1 Score: 151.0 bits (380), Expect = 1.0e-32
Identity = 100/154 (64.94%), Postives = 105/154 (68.18%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M L SGF +S LGTVTVSTPFSM A S LAFSGSLNL N PLLRS CH SFFSS S
Sbjct: 1 MALTSGFLASSLGTVTVSTPFSMDALICSVLAFSGSLNLRRNLPLLRSTRCHWSFFSSRS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEW-ALA 122
LL SPLI RTLPSS ST TSSF PG SALKTWA GVSFQS+R A A VSE+ E
Sbjct: 61 LLRSPLIWRTLPSSISTFTSSFFSPGTSALKTWASGVSFQSMRAPANAAVSESVEMRGKR 120
Query: 123 NAVELGNGKPSNGSQTSSEKGSKMLLRRPPKMLG 156
+ NGK GSQ S EKGS LLRR M+G
Sbjct: 121 LPLREPNGKSWKGSQMSREKGSNTLLRRISDMIG 154
BLAST of MS017236 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 150.6 bits (379), Expect = 1.3e-32
Identity = 103/157 (65.61%), Postives = 111/157 (70.70%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTVSTPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
SLL PLI TLPSSTST TSSFL PGRSALKT GVSFQS R LAKA VS +E +
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139
Query: 121 ANAVELGNGKPSNGSQTSSEKGSKMLLRRPPKMLGIS 158
A E PS GSQ S+ KGS LLR ++G+S
Sbjct: 140 AGTRE--RKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017236 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 3.3e-61
Identity = 138/162 (85.19%), Postives = 145/162 (89.51%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSMDLISGFFSSILGT+TV TPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
CSLLLSPLIC+TLPSSTSTLTSSFLIPGRSALK WACGVSFQS+RVLAKAEVS AEE AL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELGNGKPSNGSQTSSEKGSKMLLRRPPKMLGISDMLLQ 163
A E GKPS GSQ S+EKGSK LLRRPPKMLG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017236 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 7 SGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV VSTPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTST TSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGKPSNGSQTSSEKGSKMLLRRPPKMLGISDM 160
G GK NGSQ S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017236 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 107/159 (67.30%), Postives = 113/159 (71.07%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M SGFFSS LGTVTVSTPFS+ AFTSS LAFSG N N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L+LSPLI R LPSSTST TSSFL PGRS L TWA GVSFQS VL +VS A E L
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAE--LGC 120
Query: 123 AVELGNGK-PSNGSQTSSEKGSKMLLRRPPKMLGISDML 161
+E K PSNGSQTS E GS L+ R PK LGISDM+
Sbjct: 121 TLERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017236 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 106/166 (63.86%), Postives = 112/166 (67.47%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTVSTPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTST TSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLR-RPPKMLGISDMLLQILMKL 168
NG P GSQ S E GS LR RPPK LGI ++L Q +L
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQTKREL 160
BLAST of MS017236 vs. ExPASy TrEMBL
Match:
A0A0D9Z549 (SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1)
HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 103/161 (63.98%), Postives = 111/161 (68.94%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVSTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF S LGTVTVSTPFSM A S L FSGS NL N PLLRS CHLS FSSCS
Sbjct: 1 MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHLSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSE----AEEW 122
LL SPLICR LPSSTSTLTSSF PG SAL T A GVSFQS+R AKA VSE ++
Sbjct: 61 LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVPRGKDG 120
Query: 123 ALANAVEL--GNGKPSNGSQTSSEKGSKMLLRRPPKMLGIS 158
+ + L GKPS GSQ S EKGS MLLRR ++GI+
Sbjct: 121 KMLPLLLLPEPKGKPSKGSQRSREKGSNMLLRRIIDIVGIA 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KVI11914.1 | 5.6e-39 | 67.32 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 5.8e-36 | 63.86 | unnamed protein product [Cuscuta campestris] | [more] |
CAG1834096.1 | 1.2e-33 | 63.29 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
CAB3496390.1 | 1.0e-32 | 64.94 | unnamed protein product [Digitaria exilis] | [more] |
BAS70261.1 | 1.3e-32 | 65.61 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 3.3e-61 | 85.19 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A103YMN4 | 2.7e-39 | 67.32 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A7C9D9Y3 | 1.0e-38 | 67.30 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A484M1B1 | 2.8e-36 | 63.86 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0D9Z549 | 2.6e-34 | 63.98 | SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |