Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAATTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGTGGCCACCGAAAAAGCTTGGAATCAGCGACATGCTTCTTCAAATT
mRNA sequence
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAATTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGTGGCCACCGAAAAAGCTTGGAATCAGCGACATGCTTCTTCAAATT
Coding sequence (CDS)
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAATTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTGACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGTGGCCACCGAAAAAGCTTGGAATCAGCGACATGCTTCTTCAAATT
Protein sequence
MSMDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKMLLRWPPKKLGISDMLLQI
Homology
BLAST of MS017233 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V PFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTST TSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGKPSNGSQTSSEKGSKMLLRWPPKKLGISDM 160
G GK NGSQ S GSKML R PPKKLG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017233 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 159.8 bits (403), Expect = 1.9e-35
Identity = 103/161 (63.98%), Postives = 108/161 (67.08%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV PFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTST TSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLR-WPPKKLGISDMLLQ 163
NG P GSQ S E GS LR PPKKLGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017233 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 97/158 (61.39%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF + LGTVTV PFSM AFT STLAFSG NL N PLLRS C +S FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L SPLI RT PSSTST+TSSFL PG+SAL T A GVSFQS R A A+ S A
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEK 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLRWPPKKLGISDML 161
E+ GKP GSQ S EKGSKM R P G+SD+L
Sbjct: 121 EREVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017233 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 101/157 (64.33%), Postives = 108/157 (68.79%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTV PFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
SLL PLI TLPSSTST TSSFL PGRSALKT GVSFQS R LAKA VS +E +
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139
Query: 121 ANAVELGNGKPSNGSQTSSEKGSKMLLRWPPKKLGIS 158
A E PS GSQ S+ KGS LLR +G+S
Sbjct: 140 AGTRE--RKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017233 vs. NCBI nr
Match:
RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 85/113 (75.22%), Postives = 92/113 (81.42%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSM L+SGF + LGTVTV PFS+ AFTSSTLAFSG+LN L N PLL S CHLSFFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVS 114
SLLLSPLI RTLPSS+ST TSSF PGRSALKTWA GVSFQSI+ L KA+VS
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
BLAST of MS017233 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 1.9e-60
Identity = 136/162 (83.95%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSMDLISGFFSSILGT+TVR PFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSLLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
CSLLLSPLIC+TLPSSTSTLTSSFLIPGRSALK WACGVSFQS+RVLAKAEVS AEE AL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELGNGKPSNGSQTSSEKGSKMLLRWPPKKLGISDMLLQ 163
A E GKPS GSQ S+EKGSK LLR PPK LG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017233 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V PFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTST TSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGKPSNGSQTSSEKGSKMLLRWPPKKLGISDM 160
G GK NGSQ S GSKML R PPKKLG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017233 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 5.9e-38
Identity = 105/159 (66.04%), Postives = 111/159 (69.81%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M SGFFSS LGTVTV PFS+ AFTSS LAFSG N N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L+LSPLI R LPSSTST TSSFL PGRS L TWA GVSFQS VL +VS A E L
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAE--LGC 120
Query: 123 AVELGNGK-PSNGSQTSSEKGSKMLLRWPPKKLGISDML 161
+E K PSNGSQTS E GS L+ PKKLGISDM+
Sbjct: 121 TLERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017233 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 9.4e-36
Identity = 103/161 (63.98%), Postives = 108/161 (67.08%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV PFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTST TSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGKPSNGSQTSSEKGSKMLLR-WPPKKLGISDMLLQ 163
NG P GSQ S E GS LR PPKKLGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017233 vs. ExPASy TrEMBL
Match:
A0A0D9Z549 (SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 98/152 (64.47%), Postives = 103/152 (67.76%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRIPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF S LGTVTV PFSM A S L FSGS NL N PLLRS CHLS FSSCS
Sbjct: 1 MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHLSVFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTLTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSE----AEEW 122
LL SPLICR LPSSTSTLTSSF PG SAL T A GVSFQS+R AKA VSE ++
Sbjct: 61 LLRSPLICRMLPSSTSTLTSSFFSPGTSALNTCASGVSFQSMRAPAKAAVSEEVPRGKDG 120
Query: 123 ALANAVEL--GNGKPSNGSQTSSEKGSKMLLR 149
+ + L GKPS GSQ S EKGS MLLR
Sbjct: 121 KMLPLLLLPEPKGKPSKGSQRSREKGSNMLLR 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KVI11914.1 | 2.4e-38 | 66.01 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 1.9e-35 | 63.98 | unnamed protein product [Cuscuta campestris] | [more] |
CAG1834096.1 | 2.0e-32 | 61.39 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
BAS70261.1 | 1.3e-31 | 64.33 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
RWR97332.1 | 2.2e-31 | 75.22 | hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 1.9e-60 | 83.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A103YMN4 | 1.2e-38 | 66.01 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A7C9D9Y3 | 5.9e-38 | 66.04 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A484M1B1 | 9.4e-36 | 63.98 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0D9Z549 | 1.3e-32 | 64.47 | SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |