Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAACCCATCGAACGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAACGACATGCTTCTTCAAATT
mRNA sequence
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAACCCATCGAACGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAACGACATGCTTCTTCAAATT
Coding sequence (CDS)
ATGTCAATGGACTTGATTTCAGGCTTCTTCTCTTCCATTTTGGGCACTGTCACAGTCAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTCCTTCTCTCCCCACTGATCTGCAGAACTCTTCCTTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAACCCATCGAACGGATCCCATACATCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAACGACATGCTTCTTCAAATT
Protein sequence
MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDMLLQI
Homology
BLAST of MS017232 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 102/153 (66.67%), Postives = 114/153 (74.51%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT ASGVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDM 160
G G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017232 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 166.0 bits (419), Expect = 2.7e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALAN 122
LLSPLIC+ LPSSTSTFTSSF PGRSAL TW SGVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGNPSNGSHTSSEKGSKMLLR-RPPKMLGINDMLLQ 163
NGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017232 vs. NCBI nr
Match:
RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 151.4 bits (381), Expect = 6.9e-33
Identity = 87/113 (76.99%), Postives = 94/113 (83.19%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSM L+SGF + LGTVTV TPFS+ AFTSSTLAFSG+LN L N PLL S CHLSFFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVS 114
S LLSPLI RTLPSS+STFTSSF PGRSALKTWASGVSFQSI+ L KA+VS
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
BLAST of MS017232 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 151.0 bits (380), Expect = 9.0e-33
Identity = 101/157 (64.33%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWAL 120
S L PLI TLPSSTSTFTSSFL PGRSALKT SGVSFQS R LAKA VS +E +
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139
Query: 121 ANAVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLGIN 158
A E PS GS S+ KGS LLR ++G++
Sbjct: 140 AGTRE--RKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017232 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 97/158 (61.39%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF + LGTVTV TPFSM AFT STLAFSG NL N PLLRS C +S FSSCS
Sbjct: 1 MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALAN 122
L SPLI RT PSSTST TSSFL PG+SAL T ASGVSFQS R A A+ S A
Sbjct: 61 RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEK 120
Query: 123 AVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDML 161
E+ G P GS S EKGSKM RR P G++D+L
Sbjct: 121 EREVWKGKPWMGSQASREKGSKMRPRREPNPKGVSDIL 157
BLAST of MS017232 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 134/162 (82.72%), Postives = 141/162 (87.04%), Query Frame = 0
Query: 1 MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSFLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWAL 120
CS LLSPLIC+TLPSSTST TSSFLIPGRSALK WA GVSFQS+RVLAKAEVS AEE AL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDMLLQ 163
A E G PS GS S+EKGSK LLRRPPKMLG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017232 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 102/153 (66.67%), Postives = 114/153 (74.51%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSFLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT ASGVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 GNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDM 160
G G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017232 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 9.0e-39
Identity = 103/158 (65.19%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M SGFFSS LGTVTV TPFS+ AFTSS LAFSG N N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALAN 122
+LSPLI R LPSSTSTFTSSFL PGRS L TWASGVSFQS VL +VS A E
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELG-CT 120
Query: 123 AVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLGINDML 161
+ NPSNGS TS E GS L+ R PK LGI+DM+
Sbjct: 121 LERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017232 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALAN 122
LLSPLIC+ LPSSTSTFTSSF PGRSAL TW SGVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELGNGNPSNGSHTSSEKGSKMLLR-RPPKMLGINDMLLQ 163
NGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017232 vs. ExPASy TrEMBL
Match:
A0A0A8YU32 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 98/153 (64.05%), Postives = 104/153 (67.97%), Query Frame = 0
Query: 3 MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MDL SGF +S LGTVTV TPFS A S LAFSGS N N PLLRS CHLSFFSSCS
Sbjct: 1 MDLTSGFLASSLGTVTVSTPFSNDALICSVLAFSGSRNRRRNLPLLRSTRCHLSFFSSCS 60
Query: 63 FLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALAN 122
L SPLI RTLPSS STFTSSF PG SALKT ASGVSFQS+R AKA VSE EE N
Sbjct: 61 LLRSPLIWRTLPSSISTFTSSFFSPGTSALKTCASGVSFQSMRAPAKAAVSEPEE-VRGN 120
Query: 123 AVELGNGNPSNGSHTSSEKGSKMLLRRPPKMLG 156
+ L G P GS S +KGS L RR ++G
Sbjct: 121 RLPLLKGKPWKGSQRSRDKGSNALPRRISDIVG 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KVI11914.1 | 4.9e-39 | 66.67 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 2.7e-37 | 65.22 | unnamed protein product [Cuscuta campestris] | [more] |
RWR97332.1 | 6.9e-33 | 76.99 | hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae] | [more] |
BAS70261.1 | 9.0e-33 | 64.33 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
CAG1834096.1 | 1.5e-32 | 61.39 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 1.6e-59 | 82.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A103YMN4 | 2.4e-39 | 66.67 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A7C9D9Y3 | 9.0e-39 | 65.19 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A484M1B1 | 1.3e-37 | 65.22 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0A8YU32 | 1.5e-33 | 64.05 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |