Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGACTTTATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
mRNA sequence
ATGTCAATGGACTTTATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Coding sequence (CDS)
ATGTCAATGGACTTTATTTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTGAGAACTCCATTCTCCATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTTCCACTGCTCCGCTCGATTCTGTGCCACTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTCTTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTGTGGGGTCTCCTTCCAGTCGATTCGAGTGTTGGCAAAAGCAGAGGTTTCCGAAGCGGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGAAAATGGGAACCCATCGAACGGATCCCATACATCCAGTGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAATGCTTGGAATCAGCGACATGCTTCTTCAAATT
Protein sequence
MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDMLLQI
Homology
BLAST of MS017229 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 167.5 bits (423), Expect = 9.3e-38
Identity = 100/153 (65.36%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDM 160
G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017229 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 166.4 bits (420), Expect = 2.1e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MD SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTSTFTSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017229 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 103/157 (65.61%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM F SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
SLL PLI TLPSSTSTFTSSFL PGRSALKT GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017229 vs. NCBI nr
Match:
KAB8079852.1 (hypothetical protein EE612_000127, partial [Oryza sativa])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 100/157 (63.69%), Postives = 107/157 (68.15%), Query Frame = 0
Query: 1 MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM F SG +S LGTVTV TPFSMLAFT STLAFSGS N MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGLLTSALGTVTVSTPFSMLAFTWSTLAFSGSRNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
SLL PLI TLPSSTSTFTSSF PGRSALKT GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFFTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERRTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
BLAST of MS017229 vs. NCBI nr
Match:
RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 0
Query: 1 MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSM +SGF + LGTVTV TPFS+ AFTSSTLAFSG+LN L N PLL S CHLSFFSS
Sbjct: 41 MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCHLSFFSS 100
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVS 114
SLLLSPLI RTLPSS+STFTSSF PGRSALKTWA GVSFQSI+ L KA+VS
Sbjct: 101 FSLLLSPLIYRTLPSSSSTFTSSFFRPGRSALKTWASGVSFQSIQALTKADVS 153
BLAST of MS017229 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 136/162 (83.95%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 1 MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
MSMD ISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1 MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
CSLLLSPLIC+TLPSSTST TSSFLIPGRSALK WACGVSFQS+RVLAKAEVS AEE AL
Sbjct: 61 CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDMLLQ 163
A E E G PS GS S+EKGSK LLRRPPKMLG M+++
Sbjct: 121 AK--EFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVE 160
BLAST of MS017229 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 106/158 (67.09%), Postives = 112/158 (70.89%), Query Frame = 0
Query: 3 MDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
M F SGFFSS LGTVTV TPFS+ AFTSS LAFSG N N PL RS CHLSFFSSCS
Sbjct: 1 MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
L+LSPLI R LPSSTSTFTSSFL PGRS L TWA GVSFQS VL +VS A E
Sbjct: 61 LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELG-CT 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDML 161
E+ NPSNGS TS E GS L+ R PK LGISDM+
Sbjct: 121 LERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157
BLAST of MS017229 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 100/153 (65.36%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 7 SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
+GFF+S GTV V TPFS+ AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212
Query: 67 PLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALANAVEL 126
PLIC+ L SSTSTFTSSFLIPGRSALKT A GVSFQS RV KAEVS E ++ E+
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEV 272
Query: 127 ENGNPSNGSHTSSEKGSKMLLRRPPKMLGISDM 160
G NGS S GSKML RRPPK LG+ D+
Sbjct: 273 GKGKSLNGSQISMANGSKMLFRRPPKKLGMIDI 301
BLAST of MS017229 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 105/161 (65.22%), Postives = 110/161 (68.32%), Query Frame = 0
Query: 3 MDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
MD SGFF+S LGTVTV TPFSM AFT S AFSGS N N PLLRS CHLS FSS S
Sbjct: 1 MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60
Query: 63 LLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWALAN 122
LLLSPLIC+ LPSSTSTFTSSF PGRSAL TW GVSFQSIR A A+VS L
Sbjct: 61 LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVS------LGV 120
Query: 123 AVELENGNPSNGSHTSSEKGSKMLLR-RPPKMLGISDMLLQ 163
ENGNP GS S E GS LR RPPK LGI ++L Q
Sbjct: 121 LTAFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREILPQ 155
BLAST of MS017229 vs. ExPASy TrEMBL
Match:
A0A0P0UXN9 (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0136050 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 103/157 (65.61%), Postives = 110/157 (70.06%), Query Frame = 0
Query: 1 MSMDFISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
+SM F SGF +S LGTVTV TPFSMLAFT STLAFSGSLN MN PLLRS CHLSF SS
Sbjct: 20 ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79
Query: 61 CSLLLSPLICRTLPSSTSTFTSSFLIPGRSALKTWACGVSFQSIRVLAKAEVSEAEEWAL 120
SLL PLI TLPSSTSTFTSSFL PGRSALKT GVSFQS R LAKA VS +E
Sbjct: 80 FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEV--- 139
Query: 121 ANAVELENGNPSNGSHTSSEKGSKMLLRRPPKMLGIS 158
A E PS GS S+ KGS LLR ++G+S
Sbjct: 140 --AGTRERKTPSKGSQKSA-KGSNTLLRLTSDIVGLS 170
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KVI11914.1 | 9.3e-38 | 65.36 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 2.1e-37 | 65.22 | unnamed protein product [Cuscuta campestris] | [more] |
BAS70261.1 | 2.8e-34 | 65.61 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
KAB8079852.1 | 2.0e-32 | 63.69 | hypothetical protein EE612_000127, partial [Oryza sativa] | [more] |
RWR97332.1 | 2.0e-32 | 76.11 | hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 2.2e-61 | 83.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A7C9D9Y3 | 1.6e-40 | 67.09 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A103YMN4 | 4.5e-38 | 65.36 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A484M1B1 | 1.0e-37 | 65.22 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0P0UXN9 | 1.4e-34 | 65.61 | Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... | [more] |
Match Name | E-value | Identity | Description | |