MS017225 (gene) Bitter gourd (TR) v1

Overview


Name	MS017225
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold33: 825808 .. 826051 (+)
RNA-Seq Expression	MS017225
Synteny	MS017225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGCATCAACCTAGGCCCTATTCACCACTCGACGAGGAACCAGAAGATCTCCAGCCAAATGAGTGTGGGTGTTTCCCGCTATTCGGCTTTGGATTCTGGCCGCGGGTTTTTCCAGCTATTCGGCTTTGGATTCAACCGGAATGCTGATTACGAAGGTAGAAATCTTCTGCGGCGGGGAGAGGAATCTTGGATGGCCAGAAAATTGGAGAAGGTGAAGGAGGTCTCGGAGATGGTGGCC

mRNA sequence

ATGGCGGCGCATCAACCTAGGCCCTATTCACCACTCGACGAGGAACCAGAAGATCTCCAGCCAAATGAGGGTGTTTCCCGCTATTCGGCTTTGGATTCTGGCCGCGGGTTTTTCCAGCTATTCGGCTTTGGATTCAACCGGAATGCTGATTACGAAGGTAGAAATCTTCTGCGGCGGGGAGAGGAATCTTGGATGGCCAGAAAATTGGAGAAGGTGAAGGAGGTCTCGGAGATGGTGGCC

Coding sequence (CDS)

ATGGCGGCGCATCAACCTAGGCCCTATTCACCACTCGACGAGGAACCAGAAGATCTCCAGCCAAATGAGGGTGTTTCCCGCTATTCGGCTTTGGATTCTGGCCGCGGGTTTTTCCAGCTATTCGGCTTTGGATTCAACCGGAATGCTGATTACGAAGGTAGAAATCTTCTGCGGCGGGGAGAGGAATCTTGGATGGCCAGAAAATTGGAGAAGGTGAAGGAGGTCTCGGAGATGGTGGCC

Protein sequence

MAAHQPRPYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNLLRRGEESWMARKLEKVKEVSEMVA

Homology

[Close]

BLAST of MS017225 vs. NCBI nr
Match: XP_022135367.1 (uncharacterized protein LOC111007336 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MAAHQPR----PYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MAAHQPR    PYSPL+EEPED  PN           G G F+LFGFGF+RNAD EGRNL
Sbjct: 1  MAAHQPRPPPMPYSPLNEEPEDPPPN-----------GCGCFRLFGFGFDRNADSEGRNL 60

Query: 61 LRRGEESWMARKLEKVKEVSEMVA 81
          L RGE SWMARKL+KVKEVSEMVA
Sbjct: 61 L-RGEGSWMARKLKKVKEVSEMVA 72

[Close]

BLAST of MS017225 vs. NCBI nr
Match: XP_038876901.1 (uncharacterized protein LOC120069255 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MAAHQPR----PYSPLDEEPEDLQP-NEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRN 60
          MA HQ R    PYSPL+E+ +DLQ  +E V       +G G F+LFGFGFNRN +YE RN
Sbjct: 1  MATHQTRPPSTPYSPLNEQQDDLQDVDEAVP-----SNGCGCFRLFGFGFNRNGNYEPRN 60

Query: 61 LLR----RGEESWMARKLEKVKEVSEMVA 81
          LL+    R EESWM RKL+K+KEVSEMVA
Sbjct: 61 LLQQKQGREEESWMVRKLKKMKEVSEMVA 84

[Close]

BLAST of MS017225 vs. NCBI nr
Match: XP_008443900.1 (PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo] >KAA0050037.1 uncharacterized protein E6C27_scaffold675G00120 [Cucumis melo var. makuwa] >TYK03641.1 uncharacterized protein E5676_scaffold1369G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MAAHQPR----PYSPL-DEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRN 60
          MA+HQ R    PYSPL D++ +DLQ  +     S   +G G FQLFGFG NRN +YEG N
Sbjct: 1  MASHQTRPPSTPYSPLNDQQQDDLQDIDD----SISSNGCGCFQLFGFGSNRNRNYEGAN 60

Query: 61 LLR----RGEESWMARKLEKVKEVSEMVA 81
          LL+    R EESWM +KL+KVKEVSEMVA
Sbjct: 61 LLQQKQGREEESWMVKKLKKVKEVSEMVA 85

[Close]

BLAST of MS017225 vs. NCBI nr
Match: XP_011648475.1 (uncharacterized protein LOC105434480 [Cucumis sativus] >KGN65215.1 hypothetical protein Csa_019625 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MAAHQPR----PYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MA HQ R    PYSPL ++ +DLQ  +     S   +G G FQLFGFG NRN +YEG NL
Sbjct: 1  MATHQTRPPSTPYSPLTDQQDDLQDIDD----SISSNGCGCFQLFGFGSNRNRNYEGGNL 60

Query: 61 LR----RGEESWMARKLEKVKEVSEMVA 81
          L+    R EESWM ++L+KV+EVSEMVA
Sbjct: 61 LQQKQGREEESWMVKRLKKVREVSEMVA 84

[Close]

BLAST of MS017225 vs. NCBI nr
Match: XP_023003195.1 (uncharacterized protein LOC111496880 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MAAHQ----PRPYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MA HQ    P PYSPL+EE E L   +     +   +G   FQLFGFGFNRN +YE  NL
Sbjct: 1  MATHQTRPPPTPYSPLNEEQEHLHDTD----EAVPSNGCACFQLFGFGFNRNGNYEEGNL 60

Query: 61 LR----RGEESWMARKLEKVKEVSEMVA 81
          L+    R EE WM +KL+K+KEVSEMVA
Sbjct: 61 LQQQRGREEEFWMVKKLKKLKEVSEMVA 84

[Close]

BLAST of MS017225 vs. ExPASy TrEMBL
Match: A0A6J1C2H6 (uncharacterized protein LOC111007336 OS=Momordica charantia OX=3673 GN=LOC111007336 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MAAHQPR----PYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MAAHQPR    PYSPL+EEPED  PN           G G F+LFGFGF+RNAD EGRNL
Sbjct: 1  MAAHQPRPPPMPYSPLNEEPEDPPPN-----------GCGCFRLFGFGFDRNADSEGRNL 60

Query: 61 LRRGEESWMARKLEKVKEVSEMVA 81
          L RGE SWMARKL+KVKEVSEMVA
Sbjct: 61 L-RGEGSWMARKLKKVKEVSEMVA 72

[Close]

BLAST of MS017225 vs. ExPASy TrEMBL
Match: A0A5A7U6Q0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00700 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MAAHQPR----PYSPL-DEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRN 60
          MA+HQ R    PYSPL D++ +DLQ  +     S   +G G FQLFGFG NRN +YEG N
Sbjct: 1  MASHQTRPPSTPYSPLNDQQQDDLQDIDD----SISSNGCGCFQLFGFGSNRNRNYEGAN 60

Query: 61 LLR----RGEESWMARKLEKVKEVSEMVA 81
          LL+    R EESWM +KL+KVKEVSEMVA
Sbjct: 61 LLQQKQGREEESWMVKKLKKVKEVSEMVA 85

[Close]

BLAST of MS017225 vs. ExPASy TrEMBL
Match: A0A1S3B8N4 (uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MAAHQPR----PYSPL-DEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRN 60
          MA+HQ R    PYSPL D++ +DLQ  +     S   +G G FQLFGFG NRN +YEG N
Sbjct: 1  MASHQTRPPSTPYSPLNDQQQDDLQDIDD----SISSNGCGCFQLFGFGSNRNRNYEGAN 60

Query: 61 LLR----RGEESWMARKLEKVKEVSEMVA 81
          LL+    R EESWM +KL+KVKEVSEMVA
Sbjct: 61 LLQQKQGREEESWMVKKLKKVKEVSEMVA 85

[Close]

BLAST of MS017225 vs. ExPASy TrEMBL
Match: A0A0A0LTG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265630 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MAAHQPR----PYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MA HQ R    PYSPL ++ +DLQ  +     S   +G G FQLFGFG NRN +YEG NL
Sbjct: 1  MATHQTRPPSTPYSPLTDQQDDLQDIDD----SISSNGCGCFQLFGFGSNRNRNYEGGNL 60

Query: 61 LR----RGEESWMARKLEKVKEVSEMVA 81
          L+    R EESWM ++L+KV+EVSEMVA
Sbjct: 61 LQQKQGREEESWMVKRLKKVREVSEMVA 84

[Close]

BLAST of MS017225 vs. ExPASy TrEMBL
Match: A0A6J1KR34 (uncharacterized protein LOC111496880 OS=Cucurbita maxima OX=3661 GN=LOC111496880 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MAAHQ----PRPYSPLDEEPEDLQPNEGVSRYSALDSGRGFFQLFGFGFNRNADYEGRNL 60
          MA HQ    P PYSPL+EE E L   +     +   +G   FQLFGFGFNRN +YE  NL
Sbjct: 1  MATHQTRPPPTPYSPLNEEQEHLHDTD----EAVPSNGCACFQLFGFGFNRNGNYEEGNL 60

Query: 61 LR----RGEESWMARKLEKVKEVSEMVA 81
          L+    R EE WM +KL+K+KEVSEMVA
Sbjct: 61 LQQQRGREEEFWMVKKLKKLKEVSEMVA 84

The following BLAST results are available for this feature:

BLAST of MS017225 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135367.1	7.5e-17	69.05	uncharacterized protein LOC111007336 [Momordica charantia]	[more]
XP_038876901.1	1.1e-12	58.43	uncharacterized protein LOC120069255 [Benincasa hispida]	[more]
XP_008443900.1	1.2e-11	57.30	PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo] >KAA0050037.1 unc...	[more]
XP_011648475.1	2.8e-11	54.55	uncharacterized protein LOC105434480 [Cucumis sativus] >KGN65215.1 hypothetical ...	[more]
XP_023003195.1	2.4e-10	53.41	uncharacterized protein LOC111496880 [Cucurbita maxima]	[more]

BLAST of MS017225 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2H6	3.7e-17	69.05	uncharacterized protein LOC111007336 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5A7U6Q0	6.0e-12	57.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B8N4	6.0e-12	57.30	uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=...	[more]
A0A0A0LTG0	1.3e-11	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265630 PE=4 SV=1	[more]
A0A6J1KR34	1.1e-10	53.41	uncharacterized protein LOC111496880 OS=Cucurbita maxima OX=3661 GN=LOC111496880...	[more]

BLAST of MS017225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017225.1	MS017225.1	mRNA