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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGTTGAAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATTATAAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA mRNA sequence ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA Coding sequence (CDS) ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA Protein sequence MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQRRKREIGEMGLCQMGRESSFEDDRRQIGSANKAEERERDEEERFEAEEEVNA
Homology
BLAST of MS017221 vs. NCBI nr
Match: KAE8648014.1 (hypothetical protein Csa_021396 [Cucumis sativus]) HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11 Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0 Query: 1 MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQR-R 60 MDL+V KSTK+++E DTLQR +G VSMDL+TELHG G+ N + ++ +R R Sbjct: 1 MDLKV-------KSTKMKRERDTLQRNEGGVSMDLKTELHG--GQENWNRGNGDIVERER 60
Query: 61 KR----EIGEMGLCQMGRESSFEDDRRQIGSANKAEE----RERD-EEERFEAEEE 107 KR EIGEMGL QMG SSFEDDRRQ GS + E RER+ E ERFEAEEE Sbjct: 61 KRGKFGEIGEMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEE 107
BLAST of MS017221 vs. ExPASy TrEMBL
Match: A0A0A0KP20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13 Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0 Query: 1 MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQR-R 60 MDL+V KSTK+++E DTLQR +G VSMDL+TELHG G+ N + ++ +R R Sbjct: 1 MDLKV-------KSTKMKRERDTLQRNEGGVSMDLKTELHG--GQENWNRGNGDIVERER 60
Query: 61 KR----EIGEMGLCQMGRESSFEDDRRQIGSANKAEE----RERD-EEERFEAEEEVNA 110 KR EIGEMGL QMG SSFEDDRRQ GS + E RER+ E ERFEAEEEVNA Sbjct: 61 KRGKFGEIGEMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEVNA 110
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8648014.1 | 1.3e-11 | 56.03 | hypothetical protein Csa_021396 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KP20 | 1.1e-13 | 57.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 86..107 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 13..53 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 70..109 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 74..96 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..53 |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS017221.1 | MS017221.1 | mRNA |
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