MS017221 (gene) Bitter gourd (TR) v1

Overview


Name	MS017221
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold33: 790845 .. 791179 (+)
RNA-Seq Expression	MS017221
Synteny	MS017221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGTTGAAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATTATAAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA

mRNA sequence

ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA

Coding sequence (CDS)

ATGGATCTGCAAGTCTCCGGAGAAGGAGAGATCTCAAAATCTACAAAACTGGAGCAAGAAATAGACACATTACAGAGGAAGAAAGGTCCAGTTTCCATGGATCTGCGAACAGAACTCCATGGGGCAAGTGGGAGGCGAAATCCAAAGCAGTGGAGAGAGAACTTGAAACAGAGACGAAAACGTGAAATTGGAGAAATGGGTCTCTGTCAAATGGGAAGAGAATCGAGTTTTGAGGATGATCGACGACAAATTGGTTCTGCAAATAAAGCTGAAGAGAGAGAGAGAGATGAAGAAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCA

Protein sequence

MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQRRKREIGEMGLCQMGRESSFEDDRRQIGSANKAEERERDEEERFEAEEEVNA

Homology

[Close]

BLAST of MS017221 vs. NCBI nr
Match: KAE8648014.1 (hypothetical protein Csa_021396 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQR-R 60
           MDL+V       KSTK+++E DTLQR +G VSMDL+TELHG  G+ N  +   ++ +R R
Sbjct: 1   MDLKV-------KSTKMKRERDTLQRNEGGVSMDLKTELHG--GQENWNRGNGDIVERER 60

Query: 61  KR----EIGEMGLCQMGRESSFEDDRRQIGSANKAEE----RERD-EEERFEAEEE 107
           KR    EIGEMGL QMG  SSFEDDRRQ GS  +  E    RER+ E ERFEAEEE
Sbjct: 61  KRGKFGEIGEMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEE 107

[Close]

BLAST of MS017221 vs. ExPASy TrEMBL
Match: A0A0A0KP20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MDLQVSGEGEISKSTKLEQEIDTLQRKKGPVSMDLRTELHGASGRRNPKQWRENLKQR-R 60
           MDL+V       KSTK+++E DTLQR +G VSMDL+TELHG  G+ N  +   ++ +R R
Sbjct: 1   MDLKV-------KSTKMKRERDTLQRNEGGVSMDLKTELHG--GQENWNRGNGDIVERER 60

Query: 61  KR----EIGEMGLCQMGRESSFEDDRRQIGSANKAEE----RERD-EEERFEAEEEVNA 110
           KR    EIGEMGL QMG  SSFEDDRRQ GS  +  E    RER+ E ERFEAEEEVNA
Sbjct: 61  KRGKFGEIGEMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEVNA 110

The following BLAST results are available for this feature:

BLAST of MS017221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648014.1	1.3e-11	56.03	hypothetical protein Csa_021396 [Cucumis sativus]	[more]

BLAST of MS017221 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP20	1.1e-13	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1	[more]

BLAST of MS017221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017221.1	MS017221.1	mRNA