MS017198 (gene) Bitter gourd (TR) v1

Overview


Name	MS017198
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold33: 632117 .. 632407 (-)
RNA-Seq Expression	MS017198
Synteny	MS017198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAACCCCCCACCTCGTCATACATGGACTTTGAGTGCTGATGTGGCTTGGTCGGAGATCCATCAGAAAGGGGGTTTGGGTTGGGTGGTGCGAAATTGGGATGTTGTTATCCTTGAGGGCAATCAGTTCGTTGGCGCCTGTTTTCTCTCCAACCTTAGTCTCTACAGCGCCCGACAAAGTGTGAAGATGCTGGAGGTCTTGGCCATATTGGAGGGAATGCGAAATTTGCTTGGGTGGGTGGCTTACTCAATTCAAGTAGAGTCTGATTCAGTTGAAGTGGTGAAATTGCTC

mRNA sequence

TGGAACCCCCCACCTCGTCATACATGGACTTTGAGTGCTGATGTGGCTTGGTCGGAGATCCATCAGAAAGGGGGTTTGGGTTGGGTGGTGCGAAATTGGGATGTTGTTATCCTTGAGGGCAATCAGTTCGTTGGCGCCTGTTTTCTCTCCAACCTTAGTCTCTACAGCGCCCGACAAAGTGTGAAGATGCTGGAGGTCTTGGCCATATTGGAGGGAATGCGAAATTTGCTTGGGTGGGTGGCTTACTCAATTCAAGTAGAGTCTGATTCAGTTGAAGTGGTGAAATTGCTC

Coding sequence (CDS)

TGGAACCCCCCACCTCGTCATACATGGACTTTGAGTGCTGATGTGGCTTGGTCGGAGATCCATCAGAAAGGGGGTTTGGGTTGGGTGGTGCGAAATTGGGATGTTGTTATCCTTGAGGGCAATCAGTTCGTTGGCGCCTGTTTTCTCTCCAACCTTAGTCTCTACAGCGCCCGACAAAGTGTGAAGATGCTGGAGGTCTTGGCCATATTGGAGGGAATGCGAAATTTGCTTGGGTGGGTGGCTTACTCAATTCAAGTAGAGTCTGATTCAGTTGAAGTGGTGAAATTGCTC

Protein sequence

WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQSVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL

Homology

[Close]

BLAST of MS017198 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQ 60
           W PPP H WTL+AD +WS+   +GG+GW++R+WD  ++L GN+FV AC            
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEAC-----------N 130

Query: 61  SVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL 98
           +VK+LE  AILEG+RNL    V   + +E+DS EV  LL
Sbjct: 131 NVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLL 158

[Close]

BLAST of MS017198 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ + AW      GG+GW++R+            G    ++  +  A ++
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEK----------GEVIKASCRIIRAERN 138

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 139 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 165

[Close]

BLAST of MS017198 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-05
Identity = 30/98 (30.61%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQ 60
           W+ PP + W L+ D +WSE  + GG+GW++ +    ++L GN     C +        ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGN-----CKIRE------KK 164

Query: 61  SVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
            +  LE++ I+ G++ +       I +ESDSVEV++L+
Sbjct: 165 EINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM 191

[Close]

BLAST of MS017198 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ D AW       G+GW++R+            G    +   +  A ++
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEK----------GEVIKTGCRIIRAERN 314

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 315 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

[Close]

BLAST of MS017198 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ D AW       G+GW++R+            G    +   +  A ++
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEK----------GEVIKTGCRIIRAERN 279

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 280 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

[Close]

BLAST of MS017198 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.8e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWD-VVILEGNQFVGACFLSNLSLYSARQ 60
           W PPP H WTL+AD +WS+   +GG+GW++R+WD  ++L GN+FV AC            
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEAC-----------N 130

Query: 61  SVKMLEVLAILEGMRNLLG-WVAYSIQVESDSVEVVKLL 98
           +VK+LE  AILEG+RNL    V   + +E+DS EV  LL
Sbjct: 131 NVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLL 158

[Close]

BLAST of MS017198 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ + AW      GG+GW++R+            G    ++  +  A ++
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEK----------GEVIKASCRIIRAERN 138

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 139 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 165

[Close]

BLAST of MS017198 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 30/98 (30.61%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNW-DVVILEGNQFVGACFLSNLSLYSARQ 60
           W+ PP + W L+ D +WSE  + GG+GW++ +    ++L GN     C +        ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGN-----CKIRE------KK 164

Query: 61  SVKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
            +  LE++ I+ G++ +       I +ESDSVEV++L+
Sbjct: 165 EINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM 191

[Close]

BLAST of MS017198 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ D AW       G+GW++R+            G    +   +  A ++
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEK----------GEVIKTGCRIIRAERN 314

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 315 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

[Close]

BLAST of MS017198 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 30/97 (30.93%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1   WNPPPRHTWTLSADVAWSEIHQKGGLGWVVRNWDVVILEGNQFVGACFLSNLSLYSARQS 60
           W PP  ++W L+ D AW       G+GW++R+            G    +   +  A ++
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEK----------GEVIKTGCRIIRAERN 279

Query: 61  VKMLEVLAILEGMRNLLGWVAYSIQVESDSVEVVKLL 98
           +  LEV+AI EG+R +       I +ESDS+E + LL
Sbjct: 280 ITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

The following BLAST results are available for this feature:

BLAST of MS017198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	7.7e-16	46.46	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	3.6e-05	30.93	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022143317.1	6.2e-05	30.61	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_022154990.1	8.0e-05	30.93	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	8.0e-05	30.93	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of MS017198 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	3.8e-16	46.46	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.7e-05	30.93	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQG0	3.0e-05	30.61	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	3.9e-05	30.93	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	3.9e-05	30.93	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of MS017198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 14..97 e-value: 8.1E-7 score: 28.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017198.1	MS017198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity