Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAAATAATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCTGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAA mRNA sequence
GTGAAAATAATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCTGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAA Coding sequence (CDS)
GTGAAAATAATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCTGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAA Protein sequence
VKIMAARRQNLNFVPFLKHAQANTALRRRRRCRLVQGNRKAEDRGRIEPLRRRNGGGERREAVESADPSGVKENKGNEKDYGE
Homology
BLAST of MS017176 vs. ExPASy TrEMBL
Match:
A0A0A0KSF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 52/98 (53.06%), Postives = 58/98 (59.18%), Query Frame = 0
Query: 4 MAARRQNLNFVPFLKHAQANTAL-------RRR---RRCRLVQGNRKAEDRGRIEP-LRR 63 M A RQNL+ +P KHAQAN AL RR R RLVQ +RK ++ G E LRR Sbjct: 4 MTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLRR 63 Query: 64 RNG-------GGERREAVESADPSGVKENKGNEKDYGE 84 R G GGE E VESADP+GVKENK EKD GE Sbjct: 64 RTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101
BLAST of MS017176 vs. ExPASy TrEMBL
Match:
A0A2P5E0D3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 0
Query: 4 MAARRQNLNFVPFLKHAQANTALRR----------RRRCRLVQGNRKAEDRGRIEPLRRR 63 MAA RQ+L + L+H +A+TALRR R RLV+ NR++ DRG +E LRR Sbjct: 45 MAALRQHLQLLSVLEHPEADTALRRVRDPTRTRLVSRIPRLVEDNRQSHDRGGVEALRRS 104 Query: 64 NG---------GGERREAVESADPSGVKENKGNEKDYGE 84 G GGE +ADP+G++E +G++++ GE Sbjct: 105 QGGALRVGGGWGGEGGGVAVAADPAGIEEEEGDDEEDGE 143
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KSF2 3.6e-07 53.06 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1 [more]
A0A2P5E0D3 6.3e-04 39.39 Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
G T G A A A A T A A T G G C G G C A C G G C G G C A G A A C C T T A A C T T T G T C C C C T T C C T C A A A C A C G C C C A A G C A A A T A C A G C A C T C C G C C G T C G C C G C C G C T G C C G G C T T G T G C A G G G T A A T C G G A A G G C A G A G G A T C G C G G C C G G A T C G A G C C C T T G C G G C G G C G G A A C G G C G G C G G A G A A C G C C G T G A G G C G G T G G A A T C T G C A G A C C C A T C G G G C G T A A A G G A A A A T A A A G G T A A C G A G A A G G A T T A C G G C G A A 20 40 60 80 100 120 140 160 180 200 220 240 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 36..83
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS017176.1 MS017176.1 mRNA