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MS017172 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTACCAGAAATCTCCTCTCCCTCCTCGTGCTACTCCTGTGCGTCTTCGCCGGCGCCGCCGCGGACCCGACCCGACCCGCCCACAAACCTGTGGAAATCGTGGTCGAAGGCGTGGTGTTCTGCCAGAACTGCCGGAGAATCGGAAGCTGGTCGCTGACCGACGGGAAGGTGATCGCCGGCGCCAAAGTGAGCGTGATCTGCAAGAACCTCCACAACCAAGTCAACTTCTACAAGGTCTACCAAACCGACGCCAAGGGGTACGCATTTTAATTTCGTAAAATTAGCGTTTAGATTTATTTTTTATCTGAAAACAAAAATATGAAAACCAACCATGAAAAAATATTGTGTTTTTTTAGTATTTTCCTTTACTATATGTTTGGTAATAGATTTATAAAAAAAATATTTATATATTGTAAACAAGTGGTAATTTACTGCCAACTAAATATTTTATTTCATCTGAGTGTTATTATTAATTAATTAAGATATATGTTATTAATTTTGTAATTAATATATTTTACAATATTATATAATTTATTGTATATTAGGATATACCTGTTTTAATTTTATTAGAAATTAAATGTGTTTGTAGTATAAAATAATATATTAATTAAAACTTTTGCTTTTATTTTGTTTTATTTTATTTATCCATTTTAAGTTTCAAATCTAAAAATTCCATTATTTCGGTCGTATAATTCAAATTAGTAAATTTAAAAACAATAAAAAGATTTATATTTGAATTTTTTTATTTACGATTTTTTTCTAAATTTATTAGACACAAAATTAAAAATCTAACAATTTATTAGTACAAAATTGAAAGTTTAGATATTTAATAGACACTTTTTAATTCAAAAATATATTAAACACAACCGTACTTTATATAGATATTAAATATAAGAAAAAGAACGTAGATGAAATACTACAAAAAAAAATGTCATTAAGAAGCTTATATTAATGAGAATTTTTATCTTACTTAAAAATAGGTGGATTAGAGCTTGCTTATTAATTTATTGTTATAATTCTGGTGACGTTAACATTGAGACATTTTCATTTTTTCGATATTAATATTTAAAACTCATTTTATTTAGGTTCTCATCACCATCAAATATTTAACAAATTATATTAAAAAGTTATCTCCGACATAGAACCTCATACTACTCATACTATATTGAACTTAATAACTTAATAAATTACGATAAATTTAATCTTTTATCTATACTTTTTAACAGGTATTTTTATGCCGAGTTGGTGGGGTACAAGATGACCCATCCGGTGCTCGACCACCCGTTGCAAACCTGTAAAGTGAAACTGGTTTCGTCCCCACTGCCCGAATGCGACCGCTTGACAAATGTCAACTATGGCCTCGCCGGTGCGCCGCTCCGATATGAGAACAAGATTGTCGCCGGAAAGAACTATAGGGCGGCGGTGTACGCGGCGGGGCCACTGGCATTCCACCCGGAGAAATGCTTT ATGACTACCAGAAATCTCCTCTCCCTCCTCGTGCTACTCCTGTGCGTCTTCGCCGGCGCCGCCGCGGACCCGACCCGACCCGCCCACAAACCTGTGGAAATCGTGGTCGAAGGCGTGGTGTTCTGCCAGAACTGCCGGAGAATCGGAAGCTGGTCGCTGACCGACGGGAAGGTGATCGCCGGCGCCAAAGTGAGCGTGATCTGCAAGAACCTCCACAACCAAGTCAACTTCTACAAGGTCTACCAAACCGACGCCAAGGGGTATTTTTATGCCGAGTTGGTGGGGTACAAGATGACCCATCCGGTGCTCGACCACCCGTTGCAAACCTGTAAAGTGAAACTGGTTTCGTCCCCACTGCCCGAATGCGACCGCTTGACAAATGTCAACTATGGCCTCGCCGGTGCGCCGCTCCGATATGAGAACAAGATTGTCGCCGGAAAGAACTATAGGGCGGCGGTGTACGCGGCGGGGCCACTGGCATTCCACCCGGAGAAATGCTTT ATGACTACCAGAAATCTCCTCTCCCTCCTCGTGCTACTCCTGTGCGTCTTCGCCGGCGCCGCCGCGGACCCGACCCGACCCGCCCACAAACCTGTGGAAATCGTGGTCGAAGGCGTGGTGTTCTGCCAGAACTGCCGGAGAATCGGAAGCTGGTCGCTGACCGACGGGAAGGTGATCGCCGGCGCCAAAGTGAGCGTGATCTGCAAGAACCTCCACAACCAAGTCAACTTCTACAAGGTCTACCAAACCGACGCCAAGGGGTATTTTTATGCCGAGTTGGTGGGGTACAAGATGACCCATCCGGTGCTCGACCACCCGTTGCAAACCTGTAAAGTGAAACTGGTTTCGTCCCCACTGCCCGAATGCGACCGCTTGACAAATGTCAACTATGGCCTCGCCGGTGCGCCGCTCCGATATGAGAACAAGATTGTCGCCGGAAAGAACTATAGGGCGGCGGTGTACGCGGCGGGGCCACTGGCATTCCACCCGGAGAAATGCTTT MTTRNLLSLLVLLLCVFAGAAADPTRPAHKPVEIVVEGVVFCQNCRRIGSWSLTDGKVIAGAKVSVICKNLHNQVNFYKVYQTDAKGYFYAELVGYKMTHPVLDHPLQTCKVKLVSSPLPECDRLTNVNYGLAGAPLRYENKIVAGKNYRAAVYAAGPLAFHPEKCF Homology
BLAST of MS017172 vs. NCBI nr
Match: XP_022146860.1 (non-classical arabinogalactan protein 30 [Momordica charantia]) HSP 1 Score: 342.0 bits (876), Expect = 2.8e-90 Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 0
BLAST of MS017172 vs. NCBI nr
Match: XP_008454812.1 (PREDICTED: non-classical arabinogalactan protein 30 [Cucumis melo]) HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64 Identity = 116/166 (69.88%), Postives = 140/166 (84.34%), Query Frame = 0
BLAST of MS017172 vs. NCBI nr
Match: XP_038893345.1 (non-classical arabinogalactan protein 30 [Benincasa hispida]) HSP 1 Score: 253.1 bits (645), Expect = 1.7e-63 Identity = 117/168 (69.64%), Postives = 143/168 (85.12%), Query Frame = 0
BLAST of MS017172 vs. NCBI nr
Match: XP_023541968.1 (non-classical arabinogalactan protein 30 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63 Identity = 119/166 (71.69%), Postives = 139/166 (83.73%), Query Frame = 0
BLAST of MS017172 vs. NCBI nr
Match: XP_022996537.1 (non-classical arabinogalactan protein 30 [Cucurbita maxima]) HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63 Identity = 119/166 (71.69%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017172 vs. ExPASy Swiss-Prot
Match: Q03211 (Pistil-specific extensin-like protein OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07 Identity = 38/115 (33.04%), Postives = 54/115 (46.96%), Query Frame = 0
BLAST of MS017172 vs. ExPASy Swiss-Prot
Match: O81417 (Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN OS=Arabidopsis thaliana OX=3702 GN=SRPP PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07 Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 0
BLAST of MS017172 vs. ExPASy Swiss-Prot
Match: O49813 (Olee1-like protein OS=Betula pendula OX=3505 PE=2 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04 Identity = 39/141 (27.66%), Postives = 58/141 (41.13%), Query Frame = 0
BLAST of MS017172 vs. ExPASy Swiss-Prot
Match: P82242 (Major pollen allergen Pla l 1 OS=Plantago lanceolata OX=39414 PE=1 SV=2) HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04 Identity = 32/109 (29.36%), Postives = 54/109 (49.54%), Query Frame = 0
BLAST of MS017172 vs. ExPASy TrEMBL
Match: A0A6J1CYI2 (non-classical arabinogalactan protein 30 OS=Momordica charantia OX=3673 GN=LOC111015957 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90 Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 0
BLAST of MS017172 vs. ExPASy TrEMBL
Match: A0A1S3BZJ5 (non-classical arabinogalactan protein 30 OS=Cucumis melo OX=3656 GN=LOC103495126 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64 Identity = 116/166 (69.88%), Postives = 140/166 (84.34%), Query Frame = 0
BLAST of MS017172 vs. ExPASy TrEMBL
Match: A0A6J1K278 (non-classical arabinogalactan protein 30 OS=Cucurbita maxima OX=3661 GN=LOC111491753 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.4e-63 Identity = 119/166 (71.69%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017172 vs. ExPASy TrEMBL
Match: A0A6J1FS98 (non-classical arabinogalactan protein 30 OS=Cucurbita moschata OX=3662 GN=LOC111447700 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62 Identity = 118/166 (71.08%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017172 vs. ExPASy TrEMBL
Match: A0A0A0KP60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G211030 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62 Identity = 115/166 (69.28%), Postives = 139/166 (83.73%), Query Frame = 0
BLAST of MS017172 vs. TAIR 10
Match: AT5G05500.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 183.0 bits (463), Expect = 2.0e-46 Identity = 89/167 (53.29%), Postives = 114/167 (68.26%), Query Frame = 0
BLAST of MS017172 vs. TAIR 10
Match: AT2G47530.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11 Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of MS017172 vs. TAIR 10
Match: AT4G02270.1 (root hair specific 13 ) HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08 Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 0
BLAST of MS017172 vs. TAIR 10
Match: AT3G09925.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 54.7 bits (130), Expect = 8.4e-08 Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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