![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS017169 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCTTTTGAAGGTTACCACAACGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGAGATCATTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGTCAGTATTTCTTCATCTCAGCTTAAAATGTCAAATATTGCATTCCATCTCTGTTGGTTTGTTTAAAAAATTATTGTCATCTGAATAAATAGGAAATGGAGTAAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTTTTCTCATATAATTCAGATACCAATTTTGTACGGTTAGTAGTACATAAACTTCTAGGAATTCCCTTTTGAATCCAAAATAAGAATTTGCTATGCATTTAAAACACCGTGATTGAAGTATTAACGGTGAATAGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGGTAAGTAAAACACATGTCTTTTTGTGGCCTAAACCATCGCTTAGGACTCATTTCTCTATCTAGTTGAAATGTACACATTATAATTGATAATTTGATTTCACAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG ATGAAGCCTTTTGAAGGTTACCACAACGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGAGATCATTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTAAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTTTTCTCATATAATTCAGATACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG ATGAAGCCTTTTGAAGGTTACCACAACGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGAGATCATTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTAAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTTTTCTCATATAATTCAGATACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG MKPFEGYHNGVGSQSFGASIEKLRTEPINGDIQVEIIPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSDTNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL Homology
BLAST of MS017169 vs. NCBI nr
Match: XP_022146768.1 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 320.9 bits (821), Expect = 6.6e-84 Identity = 158/163 (96.93%), Postives = 162/163 (99.39%), Query Frame = 0
BLAST of MS017169 vs. NCBI nr
Match: XP_022146858.1 (sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 320.9 bits (821), Expect = 6.6e-84 Identity = 158/163 (96.93%), Postives = 162/163 (99.39%), Query Frame = 0
BLAST of MS017169 vs. NCBI nr
Match: XP_022996758.1 (sister chromatid cohesion 1 protein 1 [Cucurbita maxima]) HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58 Identity = 127/166 (76.51%), Postives = 139/166 (83.73%), Query Frame = 0
BLAST of MS017169 vs. NCBI nr
Match: KAG6599976.1 (putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58 Identity = 127/166 (76.51%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017169 vs. NCBI nr
Match: XP_023543038.1 (sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58 Identity = 127/166 (76.51%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017169 vs. ExPASy Swiss-Prot
Match: Q9S7T7 (Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2) HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10 Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 0
BLAST of MS017169 vs. ExPASy TrEMBL
Match: A0A6J1CZP0 (sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015955 PE=3 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 3.2e-84 Identity = 158/163 (96.93%), Postives = 162/163 (99.39%), Query Frame = 0
BLAST of MS017169 vs. ExPASy TrEMBL
Match: A0A6J1CZF6 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015896 PE=3 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 3.2e-84 Identity = 158/163 (96.93%), Postives = 162/163 (99.39%), Query Frame = 0
BLAST of MS017169 vs. ExPASy TrEMBL
Match: A0A6J1KBX6 (sister chromatid cohesion 1 protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111491896 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58 Identity = 127/166 (76.51%), Postives = 139/166 (83.73%), Query Frame = 0
BLAST of MS017169 vs. ExPASy TrEMBL
Match: A0A6J1FMB0 (sister chromatid cohesion 1 protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447108 PE=3 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58 Identity = 127/166 (76.51%), Postives = 138/166 (83.13%), Query Frame = 0
BLAST of MS017169 vs. ExPASy TrEMBL
Match: A0A6J1JEF3 (sister chromatid cohesion 1 protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483772 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.5e-57 Identity = 124/165 (75.15%), Postives = 138/165 (83.64%), Query Frame = 0
BLAST of MS017169 vs. TAIR 10
Match: AT5G05490.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11 Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 0
BLAST of MS017169 vs. TAIR 10
Match: AT5G05490.2 (Rad21/Rec8-like family protein ) HSP 1 Score: 66.6 bits (161), Expect = 2.1e-11 Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|