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MS017168 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGTAAGCTCGTTTTTCAATCTCAATCAGCTTCCATCGGTGCTGTCTTTCTTAAACTTTGCAATTGGTTTTCGGTGTTTCCTGTTCCGATTACTTCACAGGAGATATGGATATATACTTGATTTACATTTATCACAGTCCGTTTCCTCCTGAATCGATAGCTTTCGATGAACTTCTCTGTTTTTCGCAAGTTGAGATCATCAACTGTATTCTGCCATTTTCTGTATCTCTTCTATTTTATATAGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGGTAATCCAAAATAAAACTAAGCTAAGTTTCTTCTTCAATCGGTAAATGCTAGTTTAGTTTTGAAATTCCTGCGGGATTTTGCAGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGTAATCGTTTCTCAATCTCTTTGAATTTTCCAGATCTTTGACGCTCTGTTTCATCTCGGTAACAGTGTAGTAGTATCTCTGTTCTTCATTTTTTCTCAGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTCACTTCTAATGAAGGAATATAATGCTTTAGAGTTCAAACGCGGTATCTGAAGGATTGTGTAATTTGTTTTCCTGTTTCATCACAGAGGATGTAACTCGCCTTCTGGTAATTACTCGACTCTTTAGAGTTCTAACAACAGAGTACCGTTTTTTTTTTTTTTATCTTCTTCAAGTGATTGTGTTGTTTAGCTTCGTTTTCCGTTTTCTCAGGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAGTCCGTCGCCCCTTTCCTTCTTTTTAGACTCAGCAATGGATGAGCATTTAATTAACTATTTATTTCCAAAAGGAATGCGTGTGCGTTGTGGCTATTAATAGCTTGAATAAGAAGGTGATTTCGGCTATGAAATTTTTTGGGTTGCGATTTTTCATATGTCCATAGTGCAATGAGCTTTGATGATTTTGACTCTTGGCAACGATTTTAATACGTCCATAGTCCAAATTGAAAATGATTTGAATCCGAGTTAAGAAGCTGATTTTGACACTAAATTTGTTTGGTTATGTTTCGATATGTCTACCGTAAAAAAATATGGGTATTCACGGATTGGGTTGGTTGGCCACATATAGGAAATGTCCCAATATTTTCGGGTTGGATTGGATTGTCTGGTTGTGTTTTTAATTTTTAATTATCGTGGCCATGGGAGTTCGGATTAAAACTAAATGGATGAATGAGATTGAAATACAAAATGAAAGAATATAAGATAAAAATGCTAGAATTATTAGAACTAAATGAACGGTTGATATTGTGTGTGTATGTATGTGTGTATATATATATTCAATCCAATATTCAATCCTATCCGATCGGGTTGAGAAAATCACAACCCAACCCAATTTGAGGCTCCATCTAAACCAACTGGATTGGGTTAGTTGGATTGTCAGGTTTTTTTTTAACACCCCTGGTAAAAAATAAGTTAAGAAAGTTTTTCTAGTGTGGATGTAATTGGTTATGATTTACATATGTCCAACCAAATATACTCAGGAAGGAGGCTATCACTCGGCCTAAGAAGGATCCGAAAGAAGTGGGAGACCATGAGTCACAGTCCATTAACTTCTCCCACAACACCTCTCCCATAAGGTTCCAACAAACCGCTTTTTTTACTATGGTAAGCCTTTCAACAGAACGCCCTTTTTGGGTTCAGCAGTTTACAGAAATTTAGTAGTTCCCATTTAGGTTTATGCGTCGTGCTAGTCCACTGTACTTGAGAAGTGGAATTGGGAGATCTCAATCCTAATAAGTAACGCTGCGATTAGTTTATGAGAAAGATTTTCAGTATAGAATAGAACCGTTGCGCATTGGCTTAGAAGGAACTGATTTGTTTTGGTGATTAAACAAATTATAGGAGCTTGGTAGTTCTGTTGTTAACAATTCCTATTTCTTGAACAATTACCAATTATTGATTGATAGAGTTTTCTGTGTTTGCAGCGGCTTGACAGTGTGGATATTGGACAATATATCAACGACAAAACAGGGGAAGATGATCCGTCACAACAGCTCCATCAAAGTTTTATTCTGTCTATCACTTATTTTCTGAATTTATAATGCGTTCTACCTACTAATGATTTTGGTTGATCTCTTGCTCAGCTGATGCTGAAAATATAACCTTACTCGAGCGTTTTGATATGTATCAATCAAATACAAATACATTCAATAAGTTTGAAAGGTGAATTATTTACCAGCATACATATAACTTTAAATCTCTCTGCCAAAAGAAACTGCATCACTTTCTTGTGCTGGATTTGCAGATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTCTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGTAAGATACATTTTCATGACTTAGTTCTTAAGAGAATAGCCTCTACTCTTTTTCTCTCACTTTCTCAATATCTTCTTCTTTCCATTTCTGTTAGAATGGTTTGAATCTACTATATTTTCACTTGATGAAAATTAAATAGACTGATTGATGGAAACTTAGTGCTTAGAAGCCTCTTGCTAGAAAGAGAGTACTCTTCATTATTTATTTATTTAATTTTTAAGAATTACTATGACTCATCTCAATTCAATTTAACTTGCTACTACATTCCAAAATGACTTTTATGTTTGAATGACAATTTTAGAAGGAATTTCACGTTATTATGTATTCTTACCTTTAGGCCCTCCTGATGCTGAAATCCAAGGTCCACATTTTCCTGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTTATTCAACAAACCTACGAGTCCAAGGAACTTAGACAAGTATTCTACTAGTATAATTTAAATACAGACTTAACCAGACAATAAAGTATATCAATTCCACATCAGGTGCAGCAGGTGGCAATAAGAAGGAAAACAAAAAGAACAGCAGCGTCTCACATGGACTATGAACAGACCATCATTCCTGGACACATATACCAATCTTGGCTTCAAGATGTGTCGGATCTAAACTCTGGAAGGGGAAGGAAGAGAAAGGTTACTTCTCAATTTGTTTGATCTTCATTTGTAGATTTATGTAAATAGTACACTTCTAATTGTTCAATTTCCTGTTCTCGTGTGGCAGCGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTACTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTCTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGTCCACATTTTCCTGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTTATTCAACAAACCTACGAGTCCAAGGAACTTAGACAACGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTACTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTCTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGTCCACATTTTCCTGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTTATTCAACAAACCTACGAGTCCAAGGAACTTAGACAACGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTACTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT MFYSHQLLARKAPLGQIWMAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYGNLLVELNEAWKVKAAPEPTVIPKGKSLAKFDIEEDEETHLNFASGEQTQIPDTSRPSPPPQDMHREGPHFPDVEIPEQHLERNVIQQTYESKELRQRTSAMSSIKISVLMDLPPVVLSGNLFTDGGREVYYPAPLLQLWMKSIRHPHDSSSG Homology
BLAST of MS017168 vs. NCBI nr
Match: XP_022146858.1 (sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 363.6 bits (932), Expect = 1.2e-96 Identity = 222/382 (58.12%), Postives = 224/382 (58.64%), Query Frame = 0
BLAST of MS017168 vs. NCBI nr
Match: XP_022146768.1 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 360.9 bits (925), Expect = 8.0e-96 Identity = 221/382 (57.85%), Postives = 223/382 (58.38%), Query Frame = 0
BLAST of MS017168 vs. NCBI nr
Match: XP_023552287.1 (sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 305.8 bits (782), Expect = 3.0e-79 Identity = 193/372 (51.88%), Postives = 207/372 (55.65%), Query Frame = 0
BLAST of MS017168 vs. NCBI nr
Match: XP_022985848.1 (sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 297.0 bits (759), Expect = 1.4e-76 Identity = 189/372 (50.81%), Postives = 206/372 (55.38%), Query Frame = 0
BLAST of MS017168 vs. NCBI nr
Match: XP_038891624.1 (sister chromatid cohesion 1 protein 1 [Benincasa hispida]) HSP 1 Score: 293.9 bits (751), Expect = 1.2e-75 Identity = 186/371 (50.13%), Postives = 201/371 (54.18%), Query Frame = 0
BLAST of MS017168 vs. ExPASy Swiss-Prot
Match: Q9S7T7 (Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2) HSP 1 Score: 160.2 bits (404), Expect = 2.7e-38 Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of MS017168 vs. ExPASy Swiss-Prot
Match: Q9FQ19 (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE=2 SV=2) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15 Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of MS017168 vs. ExPASy Swiss-Prot
Match: Q3SWX9 (Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of MS017168 vs. ExPASy Swiss-Prot
Match: O60216 (Double-strand-break repair protein rad21 homolog OS=Homo sapiens OX=9606 GN=RAD21 PE=1 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of MS017168 vs. ExPASy Swiss-Prot
Match: Q61550 (Double-strand-break repair protein rad21 homolog OS=Mus musculus OX=10090 GN=Rad21 PE=1 SV=3) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of MS017168 vs. ExPASy TrEMBL
Match: A0A6J1CZP0 (sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015955 PE=3 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 6.0e-97 Identity = 222/382 (58.12%), Postives = 224/382 (58.64%), Query Frame = 0
BLAST of MS017168 vs. ExPASy TrEMBL
Match: A0A6J1CZF6 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015896 PE=3 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 3.9e-96 Identity = 221/382 (57.85%), Postives = 223/382 (58.38%), Query Frame = 0
BLAST of MS017168 vs. ExPASy TrEMBL
Match: A0A0A0KM61 (Rad21_Rec8_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G211560 PE=4 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 1.5e-87 Identity = 177/232 (76.29%), Postives = 192/232 (82.76%), Query Frame = 0
BLAST of MS017168 vs. ExPASy TrEMBL
Match: A0A6J1JET8 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483772 PE=3 SV=1) HSP 1 Score: 297.0 bits (759), Expect = 6.9e-77 Identity = 189/372 (50.81%), Postives = 206/372 (55.38%), Query Frame = 0
BLAST of MS017168 vs. ExPASy TrEMBL
Match: A0A6J1GXZ1 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458512 PE=3 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76 Identity = 188/372 (50.54%), Postives = 203/372 (54.57%), Query Frame = 0
BLAST of MS017168 vs. TAIR 10
Match: AT5G05490.2 (Rad21/Rec8-like family protein ) HSP 1 Score: 173.7 bits (439), Expect = 1.7e-43 Identity = 91/131 (69.47%), Postives = 112/131 (85.50%), Query Frame = 0
BLAST of MS017168 vs. TAIR 10
Match: AT5G05490.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 160.2 bits (404), Expect = 1.9e-39 Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of MS017168 vs. TAIR 10
Match: AT3G59550.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 84.7 bits (208), Expect = 1.0e-16 Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of MS017168 vs. TAIR 10
Match: AT5G16270.1 (sister chromatid cohesion 1 protein 4 ) HSP 1 Score: 67.4 bits (163), Expect = 1.7e-11 Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 0
BLAST of MS017168 vs. TAIR 10
Match: AT5G40840.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 52.0 bits (123), Expect = 7.4e-07 Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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