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MS017163 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGTAAGCTCGTTTTTCAATCTCAATCAGCTTCCATCGGTGCTGTCTTTCTTAAACTTTGCAATTGGTTTTCGGTGTTTCCTGTTCCGATTACTTCACAGGAGATATGGATATATACTTGATTTACATTTATCACAGTCCGTTTCCTCCTGAATCGATAGCTTTCGATGAACTTCTGTGTTTTTCGCAAGTTGAGATCATCAACTGTATTCTGCCATTTTCTGTATCTCTTCTATTTTATATAGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGGTAATCCAAAATAAAACTAAGCTAAGTTTCTTCTTCAATCGGTAAATGCTAGTTTAGTTTTGAAATTCCTGCGGGATTTTGCAGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGTAATCGTTTCTCAATCTCTTTGAATTTTCCAGATCTTTGACGCTCTGTTTCATCTCGGTAACAGTGTAGTAGTATCTCTGTTCTTCATTTTTTCTCAGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTCACTTCTAATGAAGGAATATAATGCTTTAGAGTTCAAACGCGGTATCTGAAGGATTGTGTAATTTGTTTTCCTGTTTCATCACAGAGGATGTAACTCGCCTTCTGGTAATTACTCGACTCTTTAGAGTTCTAACAACAGAGTACCGTTTTTTTTTTTTTTATCTTCTTCAAGTGATTGTGTTGTTTAGCTTCGTTTTCCGTTTTCTCAGGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAGTCCGTCGCCCCTTTCCTTCTTTTTAGACTCAGCAATGGATGAGCATTTAATTAACTATTTATTTCCAAAAGGAATGCGTGTGCGTTGTGGCTATTAATAGCTTGAATAAGAAGGTGATTTCGGCTATGAAATTTTTTGGGTTGCGATTTTTCATATGTCCATAGTGCAATGAGCTTTGATGATTTTGACTCTTGGCAACGATTTTAATACGTCCATAGTCCAAATTGAAAATGATTTGAATCCGAGTTAAGAAGCTGATTTTGACACTAAATTTGTTTGGTTATGTTTCGATATGTCTACCGTAAAAAAATATGGGTATTCACGGATTGGGTTGGTTGGCCACATATAGGAAATGTCCCAATATTTTCGGGTTGGATTGGATTGTCTGGTTGTGTTTTTAATTTTTAATTATCGTGGCCATGGGAGTTCGGATTAAAACTAAATGGATGAATGAGATTGAAATACAAAATGAAAGAATATAAGATAAAAATGCTAGAATTATTAGAACTAAATGAACGGTTGATATTGTGTGTGTATGTATGTGTGTATATATATATTCAATCCAATATTCAATCCTATCCGATCGGGTTGAGAAAATCACAACCCAACCCAATTTGAGGCTCCATCTAAACCAACTGGATTGGGTTAGTTGGATTGTCAGGTTTTTTTTTAACACCCCTGGTAAAAAATAAGTTAAGAAAGTTTTTCTAGTGTGGATGTAATTGGTTATGATTTACATATGTCCAACCAAATATACTCAGGAAGGAGGCTATCACTCGGCCTAAGAAGGATCCGAAAGAAGTGGGAGACCATGAGTCACAGTCCATTAACTTCTCCCACAACACCTCTCCCATAAGGTTCCAACAAACCGCTTTTTTTACTATGGTAAGCCTTTCAACAGAACGCCCTTTTTGGGTTCAGCAGTTTACAGAAATTTAGTAGTTCCCATTTAGATTTATGCGTCGTGCTAGTCCACTGTACTTGAGAAGTGGAATTGGGAGATCTCAATCCTAATAAGTAACGCTGCGATTAGTTTATGAGAAAGATTTTCAGTATAGAATAGAACCGTTGCGCATTGGCTTAGAAGGAACTGATTTGTTTTGGTGATTAAACAAATTATAGGAGCTTGGTAGTTCTGTTGTTAACAATTCCTATTTCTTGAACAATTACCAATTATTGATTGATAGAGTTTTCTGTGTTTGCAGCGGCTTGACAGTGTGGATATTGGACAATATATCAACGACAAAACAGGGGAAGATGATCCGTCACAACAGCTCCATCAAAGTTTTATTCTGTCTATCACTTATTTTCTGAATTTATAATGCGTTCTACCTACTAATGATTTTGGTTGATCTCTTGCTCAGCTGATGCTGAAAATATAACCTTACTCGAGCGTTTTGATATGTATCAATCAAATACAAATACATTCAATCAGTTTGAAAGGTGAATTACTTACCAGCATACATATAACTTTAAATCTCTCTGCCAAAAGAAACTGCATCACTTTCTTGTGCTGGATTTGCAGATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTTTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGTAAGATACATTTTCATGACTTAGTTCTGAAGAGAATAGCCTCTACTCTTTTTCTCTCACTTTCTCAATATCTTCTTCTTTCCATTTCTTTTAGACTGTTTTGAATCTACTATATTTTCACTTGATGAAAATTAAATAGACTGATTGATGGAAACTTAGTGCTTAGAAGCCTCTCGCTAAAAAGAGATTACTCTTCATTATTTATTTATTTAATTTTTAAGAATTACTATGACTCATCTCAATTCAATTTAACTTGCTACTACATTCCAAAATGACTTTTATGTTTGAATGACAATTTTAGAAGGAATTTCACGTTGTTATGTATTCTTACCTTTAGGACCTCCTGATGCTGAAATCCAAGATCCACATTTTCATGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTCATTCAACAAACCTACGAGTCCAAGGAACTTAGACATGTATTCTACTAGTATAATTTATGAATAATACAATAATTACACAATACAGACTTAACCAGACAATAAAGTGTATCAATTCCACATCAGGTGCAGCAGGTGGCAATAAGAAGGAAAACAAAAAGAACAGCAGCGTCTCACATGGACTATGAACAGACCATCATTCCTGGACACATATACCAATCTTGGCTTCAAGATGTGTCGGATCTAAACTCTGGAAGGGGAAGGAAGAGAAAGGTTACTTCTCAATTTATTTGATCTTAATTGGTAGATTTATGTAAAGAGTACACTTCTAATTGTTCAATTTCATGTTCTTGTGTGGCAGAGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTGCTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTTTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGACCTCCTGATGCTGAAATCCAAGATCCACATTTTCATGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTCATTCAACAAACCTACGAGTCCAAGGAACTTAGACATAGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTGCTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT ATGTTCTACTCTCATCAGCTTCTCGCACGAAAGGCTCCTCTAGGCCAAATCTGGATGGCTGCTACAATGCACGCGAAGATCAATCGGAGAAAGCTCGACAAGCTGAACATAATCAAAATTTGCGAGGAGATTTTGAATCCTTCAGTTCCGATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATCCTTTACGGTAACCTTCTAGTTGAGTTAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACTGTCATTCCCAAAGGAAAATCTCTGGCTAAATTTGATATTGAAGAGGATGAGGAAACACATCTGAATTTTGCTTTTGGAGAACAAACACAAATTCCAGATACTTCAAGACCTTCCCCTCCTCCTCAAGACATGCACCGAGAAGGACCTCCTGATGCTGAAATCCAAGATCCACATTTTCATGATGTTGAAATCCCAGAGCAACATCTTGAACGCAATGTCATTCAACAAACCTACGAGTCCAAGGAACTTAGACATAGAACAAGTGCAATGTCCTCTATTAAGATAAGTGTTCTCATGGACCTTCCACCTGTGGTGTTAAGTGGTAACTTATTCACAGATGGAGGTAGAGAAGTCTATTATCCAGCTCCTCTGCTACAATTATGGATGAAAAGTATTCGACACCCCCATGACTCATCTTCTGGT MFYSHQLLARKAPLGQIWMAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYGNLLVELNEAWKVKAAPEPTVIPKGKSLAKFDIEEDEETHLNFAFGEQTQIPDTSRPSPPPQDMHREGPPDAEIQDPHFHDVEIPEQHLERNVIQQTYESKELRHRTSAMSSIKISVLMDLPPVVLSGNLFTDGGREVYYPAPLLQLWMKSIRHPHDSSSG Homology
BLAST of MS017163 vs. NCBI nr
Match: XP_022146858.1 (sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106 Identity = 233/382 (60.99%), Postives = 234/382 (61.26%), Query Frame = 0
BLAST of MS017163 vs. NCBI nr
Match: XP_022146768.1 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia]) HSP 1 Score: 394.0 bits (1011), Expect = 8.8e-106 Identity = 232/382 (60.73%), Postives = 233/382 (60.99%), Query Frame = 0
BLAST of MS017163 vs. NCBI nr
Match: XP_023552287.1 (sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 304.7 bits (779), Expect = 7.0e-79 Identity = 194/380 (51.05%), Postives = 207/380 (54.47%), Query Frame = 0
BLAST of MS017163 vs. NCBI nr
Match: XP_022985848.1 (sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 295.8 bits (756), Expect = 3.3e-76 Identity = 190/380 (50.00%), Postives = 206/380 (54.21%), Query Frame = 0
BLAST of MS017163 vs. NCBI nr
Match: XP_038891624.1 (sister chromatid cohesion 1 protein 1 [Benincasa hispida]) HSP 1 Score: 293.1 bits (749), Expect = 2.1e-75 Identity = 187/379 (49.34%), Postives = 201/379 (53.03%), Query Frame = 0
BLAST of MS017163 vs. ExPASy Swiss-Prot
Match: Q9S7T7 (Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2) HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38 Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of MS017163 vs. ExPASy Swiss-Prot
Match: Q9FQ19 (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE=2 SV=2) HSP 1 Score: 84.7 bits (208), Expect = 1.5e-15 Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of MS017163 vs. ExPASy Swiss-Prot
Match: Q6TEL1 (Double-strand-break repair protein rad21 homolog A OS=Danio rerio OX=7955 GN=rad21a PE=1 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11 Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of MS017163 vs. ExPASy Swiss-Prot
Match: Q3SWX9 (Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.5e-11 Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of MS017163 vs. ExPASy Swiss-Prot
Match: O60216 (Double-strand-break repair protein rad21 homolog OS=Homo sapiens OX=9606 GN=RAD21 PE=1 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 8.5e-11 Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of MS017163 vs. ExPASy TrEMBL
Match: A0A6J1CZP0 (sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015955 PE=3 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 6.6e-107 Identity = 233/382 (60.99%), Postives = 234/382 (61.26%), Query Frame = 0
BLAST of MS017163 vs. ExPASy TrEMBL
Match: A0A6J1CZF6 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015896 PE=3 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 4.3e-106 Identity = 232/382 (60.73%), Postives = 233/382 (60.99%), Query Frame = 0
BLAST of MS017163 vs. ExPASy TrEMBL
Match: A0A0A0KM61 (Rad21_Rec8_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G211560 PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 3.4e-87 Identity = 178/240 (74.17%), Postives = 192/240 (80.00%), Query Frame = 0
BLAST of MS017163 vs. ExPASy TrEMBL
Match: A0A6J1JET8 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483772 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 1.6e-76 Identity = 190/380 (50.00%), Postives = 206/380 (54.21%), Query Frame = 0
BLAST of MS017163 vs. ExPASy TrEMBL
Match: A0A6J1GXZ1 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458512 PE=3 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 2.3e-75 Identity = 189/380 (49.74%), Postives = 203/380 (53.42%), Query Frame = 0
BLAST of MS017163 vs. TAIR 10
Match: AT5G05490.2 (Rad21/Rec8-like family protein ) HSP 1 Score: 173.3 bits (438), Expect = 2.3e-43 Identity = 91/131 (69.47%), Postives = 112/131 (85.50%), Query Frame = 0
BLAST of MS017163 vs. TAIR 10
Match: AT5G05490.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 159.8 bits (403), Expect = 2.6e-39 Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of MS017163 vs. TAIR 10
Match: AT3G59550.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16 Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 0
BLAST of MS017163 vs. TAIR 10
Match: AT5G16270.1 (sister chromatid cohesion 1 protein 4 ) HSP 1 Score: 66.6 bits (161), Expect = 3.0e-11 Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 0
BLAST of MS017163 vs. TAIR 10
Match: AT5G40840.1 (Rad21/Rec8-like family protein ) HSP 1 Score: 52.4 bits (124), Expect = 5.9e-07 Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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