MS017162 (gene) Bitter gourd (TR) v1

Overview


Name	MS017162
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sister chromatid cohesion 1 protein 1-like
Location	scaffold33: 189326 .. 190114 (-)
RNA-Seq Expression	MS017162
Synteny	MS017162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTTTTGAAGGTTACCACAGTGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGACATCGTTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGTCAGTATTTCTTCATCTCAGCTTAAAATGTCAAATATTGCATTCCATCTCTGTTGGTTTGTTTAAAAAATTATTGTCATCTGAATAAATAGGAAATGGAGTCAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTCTTCTCATATAATTCAGAGACCAATTTTGTACGGTTAGTAGTTCATAAACTTCTACGAATTCCCTTTTGAATCCAAAATAAGAATTTGCTATGCATTTACAACACCGTGATTGAAGTATTAACGGTGAATAGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGGTAAGTAAAACACATGTCTTTTTGTGGCCTAAACCATCGCTTAGGACTCATTTCTCTATCTAGTTGAAATGTACACATTATAATTGATAATTTGATTTCACAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG

mRNA sequence

ATGAAGCCTTTTGAAGGTTACCACAGTGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGACATCGTTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTCAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTCTTCTCATATAATTCAGAGACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG

Coding sequence (CDS)

ATGAAGCCTTTTGAAGGTTACCACAGTGGAGTTGGTTCTCAATCATTTGGAGCTTCCATAGAGAAGCTAAGGACAGAACCAATCAACGGTGATATCCAAGTTGACATCGTTCCAGAAGAACTCAGATCCAACTTCATGGATAACCTTATGGGGCTGGCCGAAAGAAATCAGGTGGTTACACCTAGAAATTCGGGAAATGGAGTCAGATCAGTTCCAAGCTCAGCATCTGAACATGGTGTCTTCTCATATAATTCAGAGACCAATTTTGTACGATCCAACAAGAAAATGCCGTACTCTTCGTCGAGACAAAGTAGCGGGGGTCTAGAATCTGTAGCAGAGGAGCATCAATGGCATCCACATCACTCTGATACAAATTTCAAGTTAGCAGGGTTGTCTGAAAATGATCCAGACTTATTAGTAGAAACAGCACCCACACAAACTCAACCAGCCATCAAGAATTCTGGTTTTGACAAGATAACCGATTCCATTCGATTG

Protein sequence

MKPFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHSDTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL

Homology

[Close]

BLAST of MS017162 vs. NCBI nr
Match: XP_022146768.1 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica charantia])

HSP 1 Score: 325.1 bits (832), Expect = 3.5e-85
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR
Sbjct: 410 PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 469

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSRQSSGGLESVAEEHQWHPHHS
Sbjct: 470 NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKRPYSSSRQSSGGLESVAEEHQWHPHHS 529

Query: 123 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 166
           DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Sbjct: 530 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 572

[Close]

BLAST of MS017162 vs. NCBI nr
Match: XP_022146858.1 (sister chromatid cohesion 1 protein 1-like [Momordica charantia])

HSP 1 Score: 325.1 bits (832), Expect = 3.5e-85
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR
Sbjct: 410 PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 469

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSRQSSGGLESVAEEHQWHPHHS
Sbjct: 470 NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKRPYSSSRQSSGGLESVAEEHQWHPHHS 529

Query: 123 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 166
           DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Sbjct: 530 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 572

[Close]

BLAST of MS017162 vs. NCBI nr
Match: XP_022996758.1 (sister chromatid cohesion 1 protein 1 [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 128/166 (77.11%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP 
Sbjct: 398 PFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRPNFMDNVMRLAERNQVVTPG 457

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSG G+R V SSASEHGVFSYNSETN VRSNKK PYSSSRQ SGGL+ V EE+QW  HHS
Sbjct: 458 NSGIGMRPVSSSASEHGVFSYNSETNSVRSNKKRPYSSSRQCSGGLQPVDEENQW--HHS 517

Query: 123 DTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
           D NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Sbjct: 518 DPNFKLARLSENDTDLLVETARTQTQVTQPAIKHSPADKITDSIRM 561

[Close]

BLAST of MS017162 vs. NCBI nr
Match: KAG6599976.1 (putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58
Identity = 128/166 (77.11%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 3    PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
            PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP 
Sbjct: 1337 PFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRPNFMDNVMRLAERNQVVTPG 1396

Query: 63   NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
            NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR SSGGLE V EE+QW  HHS
Sbjct: 1397 NSGIGMRPVSSSASEHGVFSYNSETNSARSNKKRPYSSSRHSSGGLEPVDEENQW--HHS 1456

Query: 123  DTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
            D NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Sbjct: 1457 DPNFKLARLSENDTDLLVETARTQTQVTQPAIKHSPADKITDSIRM 1500

[Close]

BLAST of MS017162 vs. NCBI nr
Match: XP_023543038.1 (sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58
Identity = 128/166 (77.11%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP 
Sbjct: 398 PFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRPNFMDNVMRLAERNQVVTPG 457

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR SSGGLE V EE+QW  HHS
Sbjct: 458 NSGIGMRPVSSSASEHGVFSYNSETNSARSNKKRPYSSSRHSSGGLEPVDEENQW--HHS 517

Query: 123 DTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
           D NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Sbjct: 518 DPNFKLARLSENDTDLLVETARTQTQVTQPAIKHSPADKITDSIRM 561

[Close]

BLAST of MS017162 vs. ExPASy Swiss-Prot
Match: Q9S7T7 (Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-10
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 9   SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGV 68
           S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ V
Sbjct: 407 SDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPETINRQAADIN--VTPFYSGDDV 466

Query: 69  RSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSSGGLESVAEEHQWHPHHSDTN 128
           RS+PS+ S  G  S N+     +S   N+K P SS R+   GLE VAEE  W   H +  
Sbjct: 467 RSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPRR---GLEPVAEERPW--EHREYE 526

Query: 129 FKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR 165
           F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Sbjct: 527 FEFSMLPEKRFTADKEILFETASTQTQKPVCNQSDEMITDSIK 562

[Close]

BLAST of MS017162 vs. ExPASy TrEMBL
Match: A0A6J1CZP0 (sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015955 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR
Sbjct: 410 PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 469

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSRQSSGGLESVAEEHQWHPHHS
Sbjct: 470 NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKRPYSSSRQSSGGLESVAEEHQWHPHHS 529

Query: 123 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 166
           DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Sbjct: 530 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 572

[Close]

BLAST of MS017162 vs. ExPASy TrEMBL
Match: A0A6J1CZF6 (LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC111015896 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR
Sbjct: 410 PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 469

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKK PYSSSRQSSGGLESVAEEHQWHPHHS
Sbjct: 470 NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKRPYSSSRQSSGGLESVAEEHQWHPHHS 529

Query: 123 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 166
           DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL
Sbjct: 530 DTNFKLAGLSENDPDLLVETAPTQTQPAIKNSGFDKITDSIRL 572

[Close]

BLAST of MS017162 vs. ExPASy TrEMBL
Match: A0A6J1KBX6 (sister chromatid cohesion 1 protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111491896 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 128/166 (77.11%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP 
Sbjct: 398 PFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRPNFMDNVMRLAERNQVVTPG 457

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSG G+R V SSASEHGVFSYNSETN VRSNKK PYSSSRQ SGGL+ V EE+QW  HHS
Sbjct: 458 NSGIGMRPVSSSASEHGVFSYNSETNSVRSNKKRPYSSSRQCSGGLQPVDEENQW--HHS 517

Query: 123 DTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
           D NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Sbjct: 518 DPNFKLARLSENDTDLLVETARTQTQVTQPAIKHSPADKITDSIRM 561

[Close]

BLAST of MS017162 vs. ExPASy TrEMBL
Match: A0A6J1FMB0 (sister chromatid cohesion 1 protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447108 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 128/166 (77.11%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 3   PFEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPR 62
           PFE +HSGVGSQSFGASIEKLRT+P+N DIQ +I+  ELR NFMDN+M LAERNQVVTP 
Sbjct: 398 PFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRPNFMDNVMRLAERNQVVTPG 457

Query: 63  NSGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHS 122
           NSG G+R V SSASEHGVFSYNSETN  RSNKK PYSSSR SSGGLE V EE+QW  HHS
Sbjct: 458 NSGIGMRPVSSSASEHGVFSYNSETNSARSNKKRPYSSSRHSSGGLEPVDEENQW--HHS 517

Query: 123 DTNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
           D NFKLA LSEND DLLVETA TQ   TQPAIK+S  DKITDSIR+
Sbjct: 518 DPNFKLARLSENDTDLLVETARTQTQVTQPAIKHSPADKITDSIRM 561

[Close]

BLAST of MS017162 vs. ExPASy TrEMBL
Match: A0A6J1JEF3 (sister chromatid cohesion 1 protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483772 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.8e-58
Identity = 125/165 (75.76%), Postives = 138/165 (83.64%), Query Frame = 0


Query: 4   FEGYHSGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRN 63
           +E  +SGVGSQSFGASIEKLRT+P+N DI  +I+ EELR +FM+N+MG+AERNQVVTP N
Sbjct: 326 YENQYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRPDFMNNVMGMAERNQVVTPGN 385

Query: 64  SGNGVRSVPSSASEHGVFSYNSETNFVRSNKKMPYSSSRQSSGGLESVAEEHQWHPHHSD 123
           SG GVRSV SSASEHGVF YN ETN VRSNKK PY SSRQSSGGLE VAEE+ W  HHSD
Sbjct: 386 SGIGVRSVSSSASEHGVFVYNPETNSVRSNKKRPYYSSRQSSGGLEPVAEENPW--HHSD 445

Query: 124 TNFKLAGLSENDPDLLVETAPTQ---TQPAIKNSGFDKITDSIRL 166
            NFKLA LSENDPDLLVETAPTQ   TQPAIKN   DKIT+SIR+
Sbjct: 446 PNFKLARLSENDPDLLVETAPTQTQVTQPAIKNPPADKITNSIRM 488

[Close]

BLAST of MS017162 vs. TAIR 10
Match: AT5G05490.1 (Rad21/Rec8-like family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 9   SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGV 68
           S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ V
Sbjct: 407 SDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPETINRQAADIN--VTPFYSGDDV 466

Query: 69  RSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSSGGLESVAEEHQWHPHHSDTN 128
           RS+PS+ S  G  S N+     +S   N+K P SS R+   GLE VAEE  W   H +  
Sbjct: 467 RSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPRR---GLEPVAEERPW--EHREYE 526

Query: 129 FKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR 165
           F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Sbjct: 527 FEFSMLPEKRFTADKEILFETASTQTQKPVCNQSDEMITDSIK 562

[Close]

BLAST of MS017162 vs. TAIR 10
Match: AT5G05490.2 (Rad21/Rec8-like family protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 0


Query: 9   SGVGSQSFGASIEKLRTEPINGDIQVDIVPEELRSNFMDNLMGLAERNQVVTPRNSGNGV 68
           S   SQ+  +  E LRT        V+ +    R++        A+ N  VTP  SG+ V
Sbjct: 397 SDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPETINRQAADIN--VTPFYSGDDV 456

Query: 69  RSVPSSASEHGVFSYNSETNFVRS---NKKMPYSSSRQSSGGLESVAEEHQWHPHHSDTN 128
           RS+PS+ S  G  S N+     +S   N+K P SS R+   GLE VAEE  W   H +  
Sbjct: 457 RSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPRR---GLEPVAEERPW--EHREYE 516

Query: 129 FKLAGLSEN----DPDLLVETAPTQTQPAIKNSGFDKITDSIR 165
           F+ + L E     D ++L ETA TQTQ  + N   + ITDSI+
Sbjct: 517 FEFSMLPEKRFTADKEILFETASTQTQKPVCNQSDEMITDSIK 552

The following BLAST results are available for this feature:

BLAST of MS017162 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146768.1	3.5e-85	99.39	LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like [Momordica chara...	[more]
XP_022146858.1	3.5e-85	99.39	sister chromatid cohesion 1 protein 1-like [Momordica charantia]	[more]
XP_022996758.1	2.1e-58	77.11	sister chromatid cohesion 1 protein 1 [Cucurbita maxima]	[more]
KAG6599976.1	2.8e-58	77.11	putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023543038.1	2.8e-58	77.11	sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS017162 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7T7	3.9e-10	36.20	Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE...	[more]

BLAST of MS017162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZP0	1.7e-85	99.39	sister chromatid cohesion 1 protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1CZF6	1.7e-85	99.39	LOW QUALITY PROTEIN: sister chromatid cohesion 1 protein 1-like OS=Momordica cha...	[more]
A0A6J1KBX6	1.0e-58	77.11	sister chromatid cohesion 1 protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149189...	[more]
A0A6J1FMB0	1.4e-58	77.11	sister chromatid cohesion 1 protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447...	[more]
A0A6J1JEF3	8.8e-58	75.76	sister chromatid cohesion 1 protein 1-like isoform X2 OS=Cucurbita maxima OX=366...	[more]

BLAST of MS017162 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05490.1	2.7e-11	36.20	Rad21/Rec8-like family protein	[more]
AT5G05490.2	2.7e-11	36.20	Rad21/Rec8-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..118
None	No IPR available	PANTHER	PTHR12585:SF64	SISTER CHROMATID COHESION 1 PROTEIN 1	coord: 3..164
IPR039781	Rad21/Rec8-like protein	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 3..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017162.1	MS017162.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007062	sister chromatid cohesion
cellular_component	GO:0008278	cohesin complex