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MS017160 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGGAAACTCGCCGTGCGCCTCCTGCAAGCTGCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCCCCTTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAAGTCTTTGGTGCCAGCAATGTCAGCAAAATGCTGCAGGTTCTTTTCTTTCTTCCCCTTCCTCCTCCTCCATTTTTCCGACGTTTTGGGTTTTGGATTTCGGTTATTTTTCCTCATAGAAAAGGTACAACGAAAACTGCATAGCGTGTCGATGTATATCTCTATTGATGCAAAGTCTTTTTAACAAGCATAACTGCGAATTTAAAATACGAAATTTGAAACATGAGTTTTTCTAATTTTCTTCAATATTTCAAGACGATTTATCATATTAACAAACAAGATACTAATTACTTGCCAAGTTAAAAACGTAAAAATTCTCTAATTTATTTGTGTTCTGAACAATATTTTCGTTGATACTTCTAGTCAATATGACATGTTTCTCTAATTTCCATAATCATATGACATTGTCTGCTTTAAGCGTAAATCTATATAGTTACCTCTTTCTTTTCTTTTCTTTAAGGGTTCTAGGTTGAAAAGTTAAGAGTAAATGAACTACTCCTCTCGTTAACAACTAATTTTGATTTTGAGATTAAATTCTATGAATATTGATGTCTTTACTATTTTTCTTTAATCTTTTGTTCAATATCACCATTAATACAAAGATTTTTCAAGCTGACTCGAAACTCAAAACTGTTTTTCGAGCCGGAGAACCGAAAGAATACACAACAAAACATGAAAAAATAAAAAATAAATAAAAAGTTGAATTTGTGAATTGGATGAACATTTTTTTCTTTTTCTTTTTTGGGGTGAAATAGGAACTGCCGGTTTCACAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTGTATGGATGCGTAGGGGCAATTTCGTACTTGCAGAACCAAGTCTCACAGCTACAGATGCAGCTGGCGGTGGCGCAAGCCGAGATTCTGTGCATCCAAATGCAGCAAGACCACCCCGTTTTCCCAAATTGCCCCCAGATCCACTACTCCGGCGACAAGCTACTCCCGCCGCCGTCTCCGCCGCCGTCTCAGTGCCTCAATTTTGCCAACTCTCCTAATGTAATTTACGACACCGTTTTTGGACATGATATAGTTTCT ATGGGCGGAAACTCGCCGTGCGCCTCCTGCAAGCTGCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCCCCTTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAAGTCTTTGGTGCCAGCAATGTCAGCAAAATGCTGCAGGAACTGCCGGTTTCACAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTGTATGGATGCGTAGGGGCAATTTCGTACTTGCAGAACCAAGTCTCACAGCTACAGATGCAGCTGGCGGTGGCGCAAGCCGAGATTCTGTGCATCCAAATGCAGCAAGACCACCCCGTTTTCCCAAATTGCCCCCAGATCCACTACTCCGGCGACAAGCTACTCCCGCCGCCGTCTCCGCCGCCGTCTCAGTGCCTCAATTTTGCCAACTCTCCTAATGTAATTTACGACACCGTTTTTGGACATGATATAGTTTCT ATGGGCGGAAACTCGCCGTGCGCCTCCTGCAAGCTGCTCCGGCGGCGGTGCGCCAAAGACTGCATTTTTGCCCCTTATTTTCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAAGTCTTTGGTGCCAGCAATGTCAGCAAAATGCTGCAGGAACTGCCGGTTTCACAAAGAGGCGACGCCGTGATGAGCCTAGTTTACGAGGCAAGTGCAAGAGTGAGGGACCCAGTGTATGGATGCGTAGGGGCAATTTCGTACTTGCAGAACCAAGTCTCACAGCTACAGATGCAGCTGGCGGTGGCGCAAGCCGAGATTCTGTGCATCCAAATGCAGCAAGACCACCCCGTTTTCCCAAATTGCCCCCAGATCCACTACTCCGGCGACAAGCTACTCCCGCCGCCGTCTCCGCCGCCGTCTCAGTGCCTCAATTTTGCCAACTCTCCTAATGTAATTTACGACACCGTTTTTGGACATGATATAGTTTCT MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVSQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHYSGDKLLPPPSPPPSQCLNFANSPNVIYDTVFGHDIVS Homology
BLAST of MS017160 vs. NCBI nr
Match: XP_022146841.1 (LOB domain-containing protein 12-like [Momordica charantia]) HSP 1 Score: 325.1 bits (832), Expect = 3.5e-85 Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0
BLAST of MS017160 vs. NCBI nr
Match: XP_038893139.1 (LOB domain-containing protein 12-like [Benincasa hispida]) HSP 1 Score: 318.2 bits (814), Expect = 4.2e-83 Identity = 157/167 (94.01%), Postives = 160/167 (95.81%), Query Frame = 0
BLAST of MS017160 vs. NCBI nr
Match: XP_004148190.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical protein Csa_005796 [Cucumis sativus]) HSP 1 Score: 314.7 bits (805), Expect = 4.7e-82 Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0
BLAST of MS017160 vs. NCBI nr
Match: KAA0035899.1 (LOB domain-containing protein 12-like [Cucumis melo var. makuwa] >TYK19054.1 LOB domain-containing protein 12-like [Cucumis melo var. makuwa]) HSP 1 Score: 314.7 bits (805), Expect = 4.7e-82 Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0
BLAST of MS017160 vs. NCBI nr
Match: XP_023536420.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 314.3 bits (804), Expect = 6.1e-82 Identity = 156/167 (93.41%), Postives = 158/167 (94.61%), Query Frame = 0
BLAST of MS017160 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2) HSP 1 Score: 210.7 bits (535), Expect = 1.3e-53 Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0
BLAST of MS017160 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 4.5e-43 Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 0
BLAST of MS017160 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.8e-37 Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 0
BLAST of MS017160 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2) HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36 Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 0
BLAST of MS017160 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.0e-36 Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0
BLAST of MS017160 vs. ExPASy TrEMBL
Match: A0A6J1D0K7 (LOB domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC111015947 PE=3 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85 Identity = 159/163 (97.55%), Postives = 159/163 (97.55%), Query Frame = 0
BLAST of MS017160 vs. ExPASy TrEMBL
Match: A0A5A7T3C6 (LOB domain-containing protein 12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00110 PE=3 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82 Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0
BLAST of MS017160 vs. ExPASy TrEMBL
Match: A0A0A0KP74 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G215140 PE=3 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82 Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0
BLAST of MS017160 vs. ExPASy TrEMBL
Match: A0A6J1GZ19 (LOB domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111458522 PE=3 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 8.6e-82 Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0
BLAST of MS017160 vs. ExPASy TrEMBL
Match: A0A6J1IJ16 (LOB domain-containing protein 12-like OS=Cucurbita maxima OX=3661 GN=LOC111477301 PE=3 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 4.3e-81 Identity = 153/167 (91.62%), Postives = 158/167 (94.61%), Query Frame = 0
BLAST of MS017160 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 210.7 bits (535), Expect = 8.9e-55 Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0
BLAST of MS017160 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 ) HSP 1 Score: 175.6 bits (444), Expect = 3.2e-44 Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 0
BLAST of MS017160 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 ) HSP 1 Score: 156.4 bits (394), Expect = 2.0e-38 Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 0
BLAST of MS017160 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 ) HSP 1 Score: 154.1 bits (388), Expect = 9.9e-38 Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 0
BLAST of MS017160 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 ) HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37 Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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