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MS017154 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TACTTCATAACTTGTGCTTGTGCTGACTACTGGGGAATTTTGCCATTGTGGCTTACCGGTTTAAAATGGTTTTCCTTAATCCCTCTACACGGAAAGACAAAACAGGTAACTTCTTCATTACTATGAGTTTTGATGTCAGGACTAAAGCACTAGCCTCATTTGTGTCCCTCTCAAGTGGTGTTCTTCTATGCACAGATCGATGTGCAGCCCGTGGACTCAACATTCTTGGCGTCAATCATATAATTCAGTTGGCCATGGATGTTGATCCA TACTTCATAACTTGTGCTTGTGCTGACTACTGGGGAATTTTGCCATTGTGGCTTACCGGTTTAAAATGGTTTTCCTTAATCCCTCTACACGGAAAGACAAAACAGGTATTCATTACTATGAGTTTTGATGTCAGGACTAAAGCACTAGCCTCATTTGTGTCCCTCTCAAGTGGTGTTCTTCTATGCACAGATCGATGTGCAGCCCGTGGACTCAACATTCTTGGCGTCAATCATATAATTCAGTTGGCCATGGATGTTGATCCA TACTTCATAACTTGTGCTTGTGCTGACTACTGGGGAATTTTGCCATTGTGGCTTACCGGTTTAAAATGGTTTTCCTTAATCCCTCTACACGGAAAGACAAAACAGGTATTCATTACTATGAGTTTTGATGTCAGGACTAAAGCACTAGCCTCATTTGTGTCCCTCTCAAGTGGTGTTCTTCTATGCACAGATCGATGTGCAGCCCGTGGACTCAACATTCTTGGCGTCAATCATATAATTCAGTTGGCCATGGATGTTGATCCA YFITCACADYWGILPLWLTGLKWFSLIPLHGKTKQVFITMSFDVRTKALASFVSLSSGVLLCTDRCAARGLNILGVNHIIQLAMDVDP Homology
BLAST of MS017154 vs. NCBI nr
Match: XP_028118163.1 (DEAD-box ATP-dependent RNA helicase 18 isoform X1 [Camellia sinensis]) HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17 Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017154 vs. NCBI nr
Match: THF97383.1 (hypothetical protein TEA_023740 [Camellia sinensis var. sinensis]) HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17 Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017154 vs. NCBI nr
Match: XP_022146827.1 (DEAD-box ATP-dependent RNA helicase 18 [Momordica charantia]) HSP 1 Score: 98.2 bits (243), Expect = 3.7e-17 Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017154 vs. NCBI nr
Match: KAG6599970.1 (DEAD-box ATP-dependent RNA helicase 18, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.8 bits (242), Expect = 4.9e-17 Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017154 vs. NCBI nr
Match: XP_022764967.1 (DEAD-box ATP-dependent RNA helicase 18 isoform X2 [Durio zibethinus]) HSP 1 Score: 97.8 bits (242), Expect = 4.9e-17 Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017154 vs. ExPASy Swiss-Prot
Match: Q9FLB0 (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana OX=3702 GN=RH18 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14 Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of MS017154 vs. ExPASy Swiss-Prot
Match: Q761Z9 (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1 SV=2) HSP 1 Score: 78.2 bits (191), Expect = 5.2e-14 Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of MS017154 vs. ExPASy Swiss-Prot
Match: Q8GXD6 (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana OX=3702 GN=RH49 PE=2 SV=2) HSP 1 Score: 73.6 bits (179), Expect = 1.3e-12 Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of MS017154 vs. ExPASy Swiss-Prot
Match: Q9FVV4 (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana OX=3702 GN=RH55 PE=3 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 2.2e-12 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 0
BLAST of MS017154 vs. ExPASy Swiss-Prot
Match: A6R918 (ATP-dependent rRNA helicase SPB4 OS=Ajellomyces capsulatus (strain NAm1 / WU24) OX=339724 GN=SPB4 PE=3 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 6.9e-06 Identity = 40/90 (44.44%), Postives = 49/90 (54.44%), Query Frame = 0
BLAST of MS017154 vs. ExPASy TrEMBL
Match: A0A4S4D658 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023740 PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 6.2e-18 Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017154 vs. ExPASy TrEMBL
Match: A0A6J1D0N8 (DEAD-box ATP-dependent RNA helicase 18 OS=Momordica charantia OX=3673 GN=LOC111015937 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17 Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017154 vs. ExPASy TrEMBL
Match: A0A6J1JYJ7 (DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita maxima OX=3661 GN=LOC111490906 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17 Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017154 vs. ExPASy TrEMBL
Match: A0A6J1FPL3 (DEAD-box ATP-dependent RNA helicase 18 OS=Cucurbita moschata OX=3662 GN=LOC111447076 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17 Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017154 vs. ExPASy TrEMBL
Match: A0A6P6AJI3 (DEAD-box ATP-dependent RNA helicase 18 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111310096 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17 Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017154 vs. TAIR 10
Match: AT5G05450.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 80.5 bits (197), Expect = 7.5e-16 Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of MS017154 vs. TAIR 10
Match: AT1G71370.1 (DEA(D/H)-box RNA helicase family protein ) HSP 1 Score: 73.6 bits (179), Expect = 9.2e-14 Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of MS017154 vs. TAIR 10
Match: AT1G71280.1 (DEA(D/H)-box RNA helicase family protein ) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-13 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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