MS017093 (gene) Bitter gourd (TR) v1

Overview


Name	MS017093
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAC-domain containing protein
Location	scaffold197: 1371284 .. 1371481 (+)
RNA-Seq Expression	MS017093
Synteny	MS017093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGGTTCTGAAGTTTTCCGGCATGGAAGAGCTACCGGCGACCGCCGTGGAGTACTTGCCCCCCGGATTTAGATTCCACCCTACCGACGAGGAGATCGTGACTTATTATCTTATCCAAAAGATCGTCGACGCCACCTTCACCGCCGCCGCCATCGGAGAAGCCGACTTGAACAAGTGCGAGCCTTGGGATTTGCCT

mRNA sequence

ACTGAGGTTCTGAAGTTTTCCGGCATGGAAGAGCTACCGGCGACCGCCGTGGAGTACTTGCCCCCCGGATTTAGATTCCACCCTACCGACGAGGAGATCGTGACTTATTATCTTATCCAAAAGATCGTCGACGCCACCTTCACCGCCGCCGCCATCGGAGAAGCCGACTTGAACAAGTGCGAGCCTTGGGATTTGCCT

Coding sequence (CDS)

ACTGAGGTTCTGAAGTTTTCCGGCATGGAAGAGCTACCGGCGACCGCCGTGGAGTACTTGCCCCCCGGATTTAGATTCCACCCTACCGACGAGGAGATCGTGACTTATTATCTTATCCAAAAGATCGTCGACGCCACCTTCACCGCCGCCGCCATCGGAGAAGCCGACTTGAACAAGTGCGAGCCTTGGGATTTGCCT

Protein sequence

TEVLKFSGMEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP

Homology

[Close]

BLAST of MS017093 vs. NCBI nr
Match: XP_022156195.1 (NAC domain-containing protein 92-like [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 9.6e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP
Sbjct: 1  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 58

[Close]

BLAST of MS017093 vs. NCBI nr
Match: XP_038882902.1 (NAC domain-containing protein 87 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P TAV  LPPGFRFHPTDEEIVTYYL +KIVDA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPLTAVN-LPPGFRFHPTDEEIVTYYLAKKIVDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. NCBI nr
Match: XP_023544940.1 (NAC domain-containing protein 87-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P TA++ LPPGFRFHPTDEEIVTYYL  KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPTALD-LPPGFRFHPTDEEIVTYYLTHKITDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. NCBI nr
Match: KAG7033679.1 (NAC domain-containing protein 79 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P TA++ LPPGFRFHPTDEEIVTYYL  KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPTALD-LPPGFRFHPTDEEIVTYYLTHKITDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. NCBI nr
Match: ACI01723.1 (NAC-domain containing protein [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P  A++ LPPGFRFHPTDEEIVTYYLI KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPNALD-LPPGFRFHPTDEEIVTYYLIHKITDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. ExPASy Swiss-Prot
Match: Q9FK44 (NAC domain-containing protein 87 OS=Arabidopsis thaliana OX=3702 GN=NAC087 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.0e-17
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T YL +K++++ FTA A+GEADLNKCEPWDLP
Sbjct: 21 LPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLP 67

[Close]

BLAST of MS017093 vs. ExPASy Swiss-Prot
Match: O04017 (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.5e-17
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 EYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          +YLPPGFRFHPTDEE++T+YL++K++D  F++ AI E DLNKCEPW LP
Sbjct: 15 QYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLP 63

[Close]

BLAST of MS017093 vs. ExPASy Swiss-Prot
Match: A2WJP3 (NAC domain-containing protein 20 OS=Oryza sativa subsp. indica OX=39946 GN=NAC20 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDAT-FTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T+YL  K+VD+  F  AAIGE DLNKCEPWDLP
Sbjct: 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLP 61

[Close]

BLAST of MS017093 vs. ExPASy Swiss-Prot
Match: Q9FTY0 (NAC domain-containing protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC20 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDAT-FTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T+YL  K+VD+  F  AAIGE DLNKCEPWDLP
Sbjct: 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLP 61

[Close]

BLAST of MS017093 vs. ExPASy Swiss-Prot
Match: A2WQE4 (NAC domain-containing protein 26 OS=Oryza sativa subsp. indica OX=39946 GN=NAC26 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDAT-FTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T+YL  K+VD+  F  AAIGE DLNKCEPWDLP
Sbjct: 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLP 61

[Close]

BLAST of MS017093 vs. ExPASy TrEMBL
Match: A0A6J1DPM0 (NAC domain-containing protein 92-like OS=Momordica charantia OX=3673 GN=LOC111023142 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP
Sbjct: 1  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 58

[Close]

BLAST of MS017093 vs. ExPASy TrEMBL
Match: A0A6J1IKL1 (NAC domain-containing protein 92-like OS=Cucurbita maxima OX=3661 GN=LOC111478281 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P  A++ LPPGFRFHPTDEEIVTYYLI KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPNALD-LPPGFRFHPTDEEIVTYYLIHKITDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. ExPASy TrEMBL
Match: B5TZH2 (NAC-domain containing protein OS=Cucurbita maxima OX=3661 GN=NACP1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P  A++ LPPGFRFHPTDEEIVTYYLI KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPNALD-LPPGFRFHPTDEEIVTYYLIHKITDAAFTATAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. ExPASy TrEMBL
Match: A0A6J1GEI1 (NAC domain-containing protein 92-like OS=Cucurbita moschata OX=3662 GN=LOC111453448 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE P TA++ LPPGFRFHPTDEEIVTYYL  KI DA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPPPTALD-LPPGFRFHPTDEEIVTYYLTHKITDAAFTAIAIGEADLNKCEPWDLP 57

[Close]

BLAST of MS017093 vs. ExPASy TrEMBL
Match: A0A5A7UVY1 (NAC domain-containing protein 79-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00640 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 9  MEELPATAVEYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          MEE        LPPGFRFHPTDEEIVTYYL QKIVDA FTA AIGEADLNKCEPWDLP
Sbjct: 1  MEEPQLITPVNLPPGFRFHPTDEEIVTYYLAQKIVDAAFTATAIGEADLNKCEPWDLP 58

[Close]

BLAST of MS017093 vs. TAIR 10
Match: AT5G18270.1 (Arabidopsis NAC domain containing protein 87 )

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-18
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T YL +K++++ FTA A+GEADLNKCEPWDLP
Sbjct: 21 LPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLP 67

[Close]

BLAST of MS017093 vs. TAIR 10
Match: AT5G18270.2 (Arabidopsis NAC domain containing protein 87 )

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-18
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T YL +K++++ FTA A+GEADLNKCEPWDLP
Sbjct: 21 LPPGFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLP 67

[Close]

BLAST of MS017093 vs. TAIR 10
Match: AT5G53950.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 6.0e-18
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 EYLPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          +YLPPGFRFHPTDEE++T+YL++K++D  F++ AI E DLNKCEPW LP
Sbjct: 15 QYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLP 63

[Close]

BLAST of MS017093 vs. TAIR 10
Match: AT3G04060.1 (NAC domain containing protein 46 )

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-17
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          LPPGFRFHPTDEEI+T+YL +K+ +  FTAAAIG+ADLNK EPWDLP
Sbjct: 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTAAAIGQADLNKNEPWDLP 66

[Close]

BLAST of MS017093 vs. TAIR 10
Match: AT3G15170.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 20 LPPGFRFHPTDEEIVTYYLIQKIVDATFTAAAIGEADLNKCEPWDLP 67
          +PPGFRFHPTDEE++TYYL++K++D+ F+ AAI + DLNK EPW+LP
Sbjct: 20 MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELP 66

The following BLAST results are available for this feature:

BLAST of MS017093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156195.1	9.6e-26	100.00	NAC domain-containing protein 92-like [Momordica charantia]	[more]
XP_038882902.1	1.3e-19	86.21	NAC domain-containing protein 87 [Benincasa hispida]	[more]
XP_023544940.1	6.7e-19	82.76	NAC domain-containing protein 87-like [Cucurbita pepo subsp. pepo]	[more]
KAG7033679.1	6.7e-19	82.76	NAC domain-containing protein 79 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
ACI01723.1	6.7e-19	82.76	NAC-domain containing protein [Cucurbita maxima]	[more]

BLAST of MS017093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK44	5.0e-17	76.60	NAC domain-containing protein 87 OS=Arabidopsis thaliana OX=3702 GN=NAC087 PE=2 ...	[more]
O04017	8.5e-17	67.35	Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV...	[more]
A2WJP3	3.2e-16	77.08	NAC domain-containing protein 20 OS=Oryza sativa subsp. indica OX=39946 GN=NAC20...	[more]
Q9FTY0	3.2e-16	77.08	NAC domain-containing protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC...	[more]
A2WQE4	3.2e-16	77.08	NAC domain-containing protein 26 OS=Oryza sativa subsp. indica OX=39946 GN=NAC26...	[more]

BLAST of MS017093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPM0	4.6e-26	100.00	NAC domain-containing protein 92-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1IKL1	3.2e-19	82.76	NAC domain-containing protein 92-like OS=Cucurbita maxima OX=3661 GN=LOC11147828...	[more]
B5TZH2	3.2e-19	82.76	NAC-domain containing protein OS=Cucurbita maxima OX=3661 GN=NACP1 PE=2 SV=1	[more]
A0A6J1GEI1	4.2e-19	82.76	NAC domain-containing protein 92-like OS=Cucurbita moschata OX=3662 GN=LOC111453...	[more]
A0A5A7UVY1	2.1e-18	81.03	NAC domain-containing protein 79-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of MS017093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18270.1	3.5e-18	76.60	Arabidopsis NAC domain containing protein 87	[more]
AT5G18270.2	3.5e-18	76.60	Arabidopsis NAC domain containing protein 87	[more]
AT5G53950.1	6.0e-18	67.35	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT3G04060.1	3.0e-17	76.60	NAC domain containing protein 46	[more]
AT3G15170.1	1.1e-16	65.96	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 21..66 e-value: 2.8E-12 score: 47.7
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 20..66 score: 20.208614
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 29..66 e-value: 2.2E-8 score: 36.1
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 13..66
None	No IPR available	PANTHER	PTHR31744:SF135	NAC DOMAIN-CONTAINING PROTEIN 92	coord: 17..66
None	No IPR available	PANTHER	PTHR31744	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	coord: 17..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017093.1	MS017093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding