MS017091 (gene) Bitter gourd (TR) v1

Overview


Name	MS017091
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L13, putative
Location	scaffold197: 1348664 .. 1348765 (-)
RNA-Seq Expression	MS017091
Synteny	MS017091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGTAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

mRNA sequence

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGTAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

Coding sequence (CDS)

TATGTTGGCAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAACCTACAGAAGTCATTTGTAAAGCTCTATTGTGCATGCTTCCAAGAAACAAACTG

Protein sequence

YVGNLKERSLKDQLAKPTEVICKALLCMLPRNKL

Homology

[Close]

BLAST of MS017091 vs. NCBI nr
Match: XP_039024481.1 (50S ribosomal protein L13-like [Hibiscus syriacus])

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-05
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Sbjct: 96  YIGHLKERTLKDQMAKDPTEVICKAVLRMLPRNKL 130

[Close]

BLAST of MS017091 vs. NCBI nr
Match: KAE8682304.1 (putative choline kinase 1 [Hibiscus syriacus])

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-05
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Sbjct: 323 YIGHLKERTLKDQMAKDPTEVICKAVLRMLPRNKL 357

[Close]

BLAST of MS017091 vs. NCBI nr
Match: MQM23610.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 89  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 123

[Close]

BLAST of MS017091 vs. NCBI nr
Match: XP_015570542.1 (uncharacterized protein LOC8269842 isoform X1 [Ricinus communis] >EEF49983.1 50S ribosomal protein L13, putative [Ricinus communis])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MS017091 vs. NCBI nr
Match: XP_002509553.1 (uncharacterized protein LOC8271774 [Ricinus communis] >EEF50940.1 50S ribosomal protein L13, putative [Ricinus communis])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MS017091 vs. ExPASy TrEMBL
Match: A0A6A2YSB9 (Putative choline kinase 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111272pilonHSYRG00058 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-05
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKER+LKDQ+AK PTEVICKA+L MLPRNKL
Sbjct: 323 YIGHLKERTLKDQMAKDPTEVICKAVLRMLPRNKL 357

[Close]

BLAST of MS017091 vs. ExPASy TrEMBL
Match: B9RBL9 (50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1678530 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MS017091 vs. ExPASy TrEMBL
Match: B9RFL2 (50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1435670 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 93  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 127

[Close]

BLAST of MS017091 vs. ExPASy TrEMBL
Match: A0A6J1BUX0 (uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005959 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           YVGNLKERSLKDQLAK PTEVI KA+L MLPRNKL
Sbjct: 95  YVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNKL 129

[Close]

BLAST of MS017091 vs. ExPASy TrEMBL
Match: R7W3M6 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_12470 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-05
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKER LKD +AK PT+VICK ++CMLPRNKL
Sbjct: 82  YIGHLKERKLKDHMAKDPTQVICKVVMCMLPRNKL 116

[Close]

BLAST of MS017091 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.5e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Sbjct: 97  YIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNL 131

[Close]

BLAST of MS017091 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.5e-06
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   YVGNLKERSLKDQLAK-PTEVICKALLCMLPRNKL 35
           Y+G+LKERSLKDQ+AK PTEVI KA+  MLP N L
Sbjct: 97  YIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNL 131

The following BLAST results are available for this feature:

BLAST of MS017091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_039024481.1	3.7e-05	80.00	50S ribosomal protein L13-like [Hibiscus syriacus]	[more]
KAE8682304.1	3.7e-05	80.00	putative choline kinase 1 [Hibiscus syriacus]	[more]
MQM23610.1	4.8e-05	88.57	hypothetical protein [Colocasia esculenta]	[more]
XP_015570542.1	4.8e-05	88.57	uncharacterized protein LOC8269842 isoform X1 [Ricinus communis] >EEF49983.1 50S...	[more]
XP_002509553.1	4.8e-05	88.57	uncharacterized protein LOC8271774 [Ricinus communis] >EEF50940.1 50S ribosomal ...	[more]

BLAST of MS017091 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2YSB9	1.8e-05	80.00	Putative choline kinase 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111272pil...	[more]
B9RBL9	2.3e-05	88.57	50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1678530 ...	[more]
B9RFL2	2.3e-05	88.57	50S ribosomal protein L13, putative OS=Ricinus communis OX=3988 GN=RCOM_1435670 ...	[more]
A0A6J1BUX0	2.3e-05	88.57	uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
R7W3M6	4.0e-05	71.43	Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_12470 PE=3 SV=1	[more]

BLAST of MS017091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01790.1	3.5e-06	71.43	Ribosomal protein L13 family protein	[more]
AT3G01790.2	3.5e-06	71.43	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 1..34 e-value: 1.3E-5 score: 26.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017091.1	MS017091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome