MS017085 (gene) Bitter gourd (TR) v1

Overview
NameMS017085
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold197: 1321911 .. 1322102 (-)
RNA-Seq ExpressionMS017085
SyntenyMS017085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATATGGAAACTAAACGTTGTGCCAAAAATTCGAACATTCATACTGAGATTTGCGCATAATTTCATTCCAACGATGTTAAATTCGAGCCAGAAAGGTTTAAATGTCTCACCTTTCTATCTATGTTGTCGTTCTCAGGAAGAATCTACTACTCATGCTCTATTGGCTTGTCTTCGAGCACAGCAAATCTGG

mRNA sequence

AGAATATGGAAACTAAACGTTGTGCCAAAAATTCGAACATTCATACTGAGATTTGCGCATAATTTCATTCCAACGATGTTAAATTCGAGCCAGAAAGGTTTAAATGTCTCACCTTTCTATCTATGTTGTCGTTCTCAGGAAGAATCTACTACTCATGCTCTATTGGCTTGTCTTCGAGCACAGCAAATCTGG

Coding sequence (CDS)

AGAATATGGAAACTAAACGTTGTGCCAAAAATTCGAACATTCATACTGAGATTTGCGCATAATTTCATTCCAACGATGTTAAATTCGAGCCAGAAAGGTTTAAATGTCTCACCTTTCTATCTATGTTGTCGTTCTCAGGAAGAATCTACTACTCATGCTCTATTGGCTTGTCTTCGAGCACAGCAAATCTGG

Protein sequence

RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQIW
Homology
BLAST of MS017085 vs. NCBI nr
Match: KAF7812642.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 2   IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
           +WK NV PKI+ FI R   N +P+  N +++ ++V P Y  C++ EE+T H L  C +A 
Sbjct: 257 LWKANVAPKIKDFIWRIFRNALPSNHNLARRNMHVDPIYPLCKAYEETTEHLLFRCEKAS 316

Query: 62  QIW 65
           Q+W
Sbjct: 317 QVW 319

BLAST of MS017085 vs. NCBI nr
Match: XP_030963521.1 (uncharacterized protein LOC115984637 [Quercus lobata])

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 1   RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRA 60
           ++W LN+  K+R F  R     IP+MLN S +G+ V P Y  C  + EST HA++ C  A
Sbjct: 87  KMWHLNIPAKVRVFAWRLCMKAIPSMLNMSNRGIQVDPTYPVCCGEPESTEHAIIYCGAA 146

Query: 61  QQIW 65
           +++W
Sbjct: 147 KRVW 150

BLAST of MS017085 vs. NCBI nr
Match: KAF7824053.1 (hypothetical protein G2W53_022197 [Senna tora])

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 1   RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRA 60
           RIWKL V PKIR F  R  HN +PT LN  ++G+ +      CR   E T H  + C  A
Sbjct: 840 RIWKLTVTPKIRIFFWRLCHNALPTCLNLGKRGVQILNECPRCRLPNEDTVHTFIGCTWA 899

Query: 61  QQIW 65
           Q +W
Sbjct: 900 QLVW 903

BLAST of MS017085 vs. NCBI nr
Match: XP_023918548.1 (uncharacterized protein LOC112030098 [Quercus suber])

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-06
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 3   WKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQQ 62
           W+LN+ PK++ F  +   N +P+MLN  ++GLN S F   C  + ES  HALL C  A+Q
Sbjct: 201 WRLNIPPKVQIFAWQVCRNDLPSMLNLRRRGLNTSGFCPICDKELESIEHALLHCSHAKQ 260

Query: 63  IW 65
            W
Sbjct: 261 TW 262

BLAST of MS017085 vs. NCBI nr
Match: KAF7825130.1 (putative RNA-directed DNA polymerase [Senna tora])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 0

Query: 1   RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRA 60
           +IWK N+ PKIR F+ R     +PT LN   +G+ ++     C ++EE T HAL+ C   
Sbjct: 345 KIWKTNLPPKIRLFVWRACRGILPTCLNLKNRGMEITTQCCVCGTEEEDTLHALVTCSEL 404

Query: 61  QQIW 65
             +W
Sbjct: 405 NSLW 408

BLAST of MS017085 vs. ExPASy TrEMBL
Match: A0A2N9HRC9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42071 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0

Query: 1   RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRA 60
           R+WKLN+  KI+ FI R  H+ +PT  N  ++ +  +PF   C  +EESTTHAL  C  A
Sbjct: 774 RVWKLNIPGKIKHFIWRVYHDSLPTSHNLFRRKITPNPFCKICDQEEESTTHALWKCAMA 833

Query: 61  QQIW 65
              W
Sbjct: 834 WNTW 837

BLAST of MS017085 vs. ExPASy TrEMBL
Match: A0A7N2LAI0 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 2   IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
           IW LNV PKIRTFI R   N +PT  N  ++ + V P    C+ + E+TTH L  C  A+
Sbjct: 41  IWSLNVPPKIRTFIWRACSNCLPTRDNLHRRRVRVEPTCELCKQEPETTTHILWTCPFAR 100

Query: 62  QIW 65
            +W
Sbjct: 101 NVW 103

BLAST of MS017085 vs. ExPASy TrEMBL
Match: A0A445C0H0 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040672 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 2   IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
           IWKL V  KIRTF+ R +HN +P   N  +K ++ +P    C  + EST HALL C   +
Sbjct: 807 IWKLKVPQKIRTFLWRASHNILPVFQNLYKKKISNTPICPICLQEPESTEHALLLCPWTR 866

Query: 62  QIW 65
            +W
Sbjct: 867 AVW 869

BLAST of MS017085 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 29/63 (46.03%), Postives = 34/63 (53.97%), Query Frame = 0

Query: 2    IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
            IWKL V  KI+ FI R AH  IPT  N   +G+   P    C  + ES  HA   C RA+
Sbjct: 1135 IWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFHCKRAR 1194

Query: 62   QIW 65
            QIW
Sbjct: 1195 QIW 1197

BLAST of MS017085 vs. ExPASy TrEMBL
Match: A0A803Q9W0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-05
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 2    IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
            IWK    PK+R FI R  + ++P  +N   +G++V+P    C  +EE+  H+L  C  A+
Sbjct: 1487 IWKFEAPPKVRNFIWRVCNGWLPVNMNLRARGMDVNPLCCWCNQEEETIEHSLWYCTSAK 1546

Query: 62   QIW 65
             IW
Sbjct: 1547 NIW 1549

BLAST of MS017085 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 9.6e-05
Identity = 19/64 (29.69%), Postives = 32/64 (50.00%), Query Frame = 0

Query: 1  RIWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRA 60
          +IWKL   PKI+ F+ +     + T  N  ++ +   P    C  ++E++ H    C  A
Sbjct: 17 KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 61 QQIW 65
          QQ+W
Sbjct: 77 QQVW 80

BLAST of MS017085 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.3e-04
Identity = 19/63 (30.16%), Postives = 30/63 (47.62%), Query Frame = 0

Query: 2  IWKLNVVPKIRTFILRFAHNFIPTMLNSSQKGLNVSPFYLCCRSQEESTTHALLACLRAQ 61
          IWKL+V PKI+ F+ R     + T      + ++  P    C  +EE+  H +  C   Q
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 62 QIW 65
           +W
Sbjct: 97 SVW 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7812642.13.3e-0741.27reverse transcriptase [Senna tora][more]
XP_030963521.11.6e-0640.63uncharacterized protein LOC115984637 [Quercus lobata][more]
KAF7824053.11.6e-0643.75hypothetical protein G2W53_022197 [Senna tora][more]
XP_023918548.14.8e-0643.55uncharacterized protein LOC112030098 [Quercus suber][more]
KAF7825130.11.1e-0537.50putative RNA-directed DNA polymerase [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9HRC92.3e-0643.75Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42071 PE=4 SV=1[more]
A0A7N2LAI05.2e-0644.44zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A445C0H01.2e-0542.86RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040672 ... [more]
A0A6J1DX301.5e-0546.03uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803Q9W02.6e-0536.51Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G25270.19.6e-0529.69Ribonuclease H-like superfamily protein [more]
AT2G02650.11.3e-0430.16Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..64
e-value: 3.9E-12
score: 46.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017085.1MS017085.1mRNA