MS017079 (gene) Bitter gourd (TR) v1

Overview


Name	MS017079
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	scaffold197: 1291088 .. 1291883 (-)
RNA-Seq Expression	MS017079
Synteny	MS017079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGACGGTGGTTTCGGAGGTAGAGGAGGAGGCCGTGGCGGCGGCGGCCGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTCCGTGATGAGGGTCCTCCGGCTGAAGTCGTTGGTTCGTCTCTCCCGTTACTTCTAAAAGCTTTCTGTTTTGCTTCCTATTTCGTGCTTCTTTGCTTTGATGATATTTTAAGAAGAGGTTTAATACAATAGTTTTTTCCCACTTTTATTTTACAATGCGATGTTCAGTTCGGCTCCTTAAGACTAATTATATCCAGATGTTTTACTAGTTTGATCGTTTTTTAAAAAAGTATGGATTTTTTTTATTTACTTTTGTTATCTTCTTCGTTTTACCGTGTGCATCTCTATAATGATTCTTTCTGTTGCAGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGATGCCGTCACAAGGCTCACAAATGAAAAGATTCCTTTCTTTAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTGTGAGTCCACTGGCCTTTTTGATTTTGTTAGTCGTTTAGTCTTGTTGGGTGTAGTTTTGATATATGATGAATCCTTGTTTTCTTTCCTGATTGCAGTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCGTATACTTCTGGGGATAAATTTTATATCGATCCGGCAAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAG

mRNA sequence

ATGCGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGACGGTGGTTTCGGAGGTAGAGGAGGAGGCCGTGGCGGCGGCGGCCGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTCCGTGATGAGGGTCCTCCGGCTGAAGTCGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGATGCCGTCACAAGGCTCACAAATGAAAAGATTCCTTTCTTTAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCGTATACTTCTGGGGATAAATTTTATATCGATCCGGCAAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAG

Coding sequence (CDS)

ATGCGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGACGGTGGTTTCGGAGGTAGAGGAGGAGGCCGTGGCGGCGGCGGCCGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTCCGTGATGAGGGTCCTCCGGCTGAAGTCGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGATGCCGTCACAAGGCTCACAAATGAAAAGATTCCTTTCTTTAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGTAAAGTTGATGAAATTTTCGGCCCCATCAATGAATCTTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCGTATACTTCTGGGGATAAATTTTATATCGATCCGGCAAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAG

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARFLPQPK

Homology

[Close]

BLAST of MS017079 vs. NCBI nr
Match: XP_022156221.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 9.8e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120
           ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPK 143
           GDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPK 142

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BLAST of MS017079 vs. NCBI nr
Match: XP_023518062.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. NCBI nr
Match: KAG6595505.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. NCBI nr
Match: KAG7027491.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-52
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GGG G  G GGGRFGG GG  GGFRDEGPP+EVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYTSGDKFYIDPAKLLPLARFLPQPK 143
           ATSY+ GDKF+IDP KLLPLARFLPQPK
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPK 148

[Close]

BLAST of MS017079 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-47
Identity = 111/144 (77.08%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTF 60
           MRPPRGGG F  RGGRD   GGRG GR   GRG GRF    GGG  DEGPP+EVVEV+TF
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGR---GRGRGRF----GGGNYDEGPPSEVVEVATF 60

Query: 61  LHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 120
           LHACEGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY
Sbjct: 61  LHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSY 120

Query: 121 TSGDKFYIDPAKLLPLARFLPQPK 143
           + GDKF+I P KLLPL+RFLPQPK
Sbjct: 121 SQGDKFFISPEKLLPLSRFLPQPK 135

[Close]

BLAST of MS017079 vs. ExPASy Swiss-Prot
Match: Q2HH48 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.7e-35
Identity = 82/125 (65.60%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 18  FGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLHACEGDAVTRLTNEKIPF 77
           F G   GRGGGG GGGR GGRGG   RD GPPA V+E+  F+HACEG+ V   TN K+P 
Sbjct: 3   FRGAPRGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPH 62

Query: 78  FNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLARF 137
           FNAPIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RF
Sbjct: 63  FNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERF 122

Query: 138 LPQPK 143
           LP+PK
Sbjct: 123 LPKPK 127

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BLAST of MS017079 vs. ExPASy Swiss-Prot
Match: A1CVY3 (H/ACA ribonucleoprotein complex subunit gar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=gar1 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.7e-35
Identity = 83/127 (65.35%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 21  RGGGRGG---GGRGGGRFGGRGG-GGFRDE-GPPAEVVEVSTFLHACEGDAVTRLTNEKI 80
           RGGGRGG   G   GG FGGRGG GGF+ + GPPA+V+E+ TF+HACEG+ V    N KI
Sbjct: 4   RGGGRGGFASGANRGGNFGGRGGRGGFQAQTGPPAQVLEMGTFMHACEGEMVCESVNPKI 63

Query: 81  PFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTSGDKFYIDPAKLLPLA 140
           P+FNAPIYL+NKT IGKVDE+ GPIN+ YF+IK  EGIVATS+  GDK YI   KLLPL 
Sbjct: 64  PYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLE 123

Query: 141 RFLPQPK 143
           +FLP+PK
Sbjct: 124 KFLPKPK 130

[Close]

BLAST of MS017079 vs. ExPASy Swiss-Prot
Match: Q5RJV1 (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-33
Identity = 93/146 (63.70%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 5   RGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFG-GRGGG------GFRDEGPPAEVVEVST 64
           RGGGG RGG  GGFGGRGGGRGG G+GGGR G GRGGG      G  D+GPP  VVEV  
Sbjct: 11  RGGGGGRGG--GGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGE 70

Query: 65  FLHACEGDAVTR-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 124
           F+H CE D V + +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A
Sbjct: 71  FMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKA 130

Query: 125 TSYTSGDKFYIDPAKLLPLARFLPQP 142
           +S+    KFYIDPAKLLPL RFLP+P
Sbjct: 131 SSFKKLQKFYIDPAKLLPLQRFLPRP 154

[Close]

BLAST of MS017079 vs. ExPASy TrEMBL
Match: A0A6J1DU94 (H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111023158 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120
           ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPK 143
           GDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPK 142

[Close]

BLAST of MS017079 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPAEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGGGG RGGGRFGGRGGGGFRDEGPP+EVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYT 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPK 143
           SGDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK 143

[Close]

BLAST of MS017079 vs. ExPASy TrEMBL
Match: A0A6J1IKQ7 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478321 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGGGR   GRGGGRFGGRGGGGFRDEGPPAEVVE+S+FLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGR---GRGGGRFGGRGGGGFRDEGPPAEVVEISSFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120
           ACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPK 143
           GDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPK 139

[Close]

BLAST of MS017079 vs. ExPASy TrEMBL
Match: A0A6J1GF54 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111453623 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGGGR   GRGGGRFGGRGGGGFRDEGPP+EVVEVS+FLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGR---GRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120
           ACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPK 143
           GDKFYIDPAKLLPLARFLPQPK
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPK 139

[Close]

BLAST of MS017079 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-53
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGR-GGGRGGGGRGGGRFGGRGG--GGFRDEGPPAEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GGG G  G GGGRFGG GG  GGFRDEGPP+EVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYTSGDKFYIDPAKLLPLARFLPQPK 143
           ATSY+ GDKF+IDP KLLPLARFLPQPK
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPK 148

[Close]

BLAST of MS017079 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.2e-48
Identity = 111/144 (77.08%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTF 60
           MRPPRGGG F  RGGRD   GGRG GR   GRG GRF    GGG  DEGPP+EVVEV+TF
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGR---GRGRGRF----GGGNYDEGPPSEVVEVATF 60

Query: 61  LHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY 120
           LHACEGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY
Sbjct: 61  LHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSY 120

Query: 121 TSGDKFYIDPAKLLPLARFLPQPK 143
           + GDKF+I P KLLPL+RFLPQPK
Sbjct: 121 SQGDKFFISPEKLLPLSRFLPQPK 135

The following BLAST results are available for this feature:

BLAST of MS017079 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156221.1	9.8e-68	100.00	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica cha...	[more]
XP_023518062.1	4.5e-65	97.20	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
KAG6595505.1	4.5e-65	97.20	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
XP_022925015.1	4.5e-65	97.20	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
KAG7027491.1	4.5e-65	97.20	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]

BLAST of MS017079 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	1.6e-52	83.11	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	4.4e-47	77.08	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q2HH48	8.7e-35	65.60	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
A1CVY3	8.7e-35	65.35	H/ACA ribonucleoprotein complex subunit gar1 OS=Neosartorya fischeri (strain ATC...	[more]
Q5RJV1	2.1e-33	63.70	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 ...	[more]

BLAST of MS017079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU94	4.7e-68	100.00	H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1HPE3	2.2e-65	97.20	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	2.2e-65	97.20	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1IKQ7	1.9e-64	95.07	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478...	[more]
A0A6J1GF54	3.2e-64	95.07	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MS017079 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	1.1e-53	83.11	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	3.2e-48	77.08	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 48..139 e-value: 4.4E-42 score: 143.8
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 43..138 e-value: 6.8E-35 score: 120.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..142
None	No IPR available	PANTHER	PTHR23237:SF11	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 1..142
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 53..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017079.1	MS017079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis