MS017077 (gene) Bitter gourd (TR) v1

Overview


Name	MS017077
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Methyltransferase-related protein
Location	scaffold197: 1277273 .. 1277521 (-)
RNA-Seq Expression	MS017077
Synteny	MS017077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCTCTCCGATTCATCCTCGTGTTCCTCTCCGCAGTTCTGGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCGATTTCGTCCTCCGATGTCGCTTCGGAGAAATCGCCGCCGTCCGACGAGAAGCGAGGAGTAGGGACGACAATTCAGAATGGATTCTGGATCTTCGTGGACATGGCGAGCGGGAGATACCTGTGGAGGAATTTGAACGGATCAAATCAGGCCGCCAAGGTTGAGAGT

mRNA sequence

ATGTGTCCTCTCCGATTCATCCTCGTGTTCCTCTCCGCAGTTCTGGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCGATTTCGTCCTCCGATGTCGCTTCGGAGAAATCGCCGCCGTCCGACGAGAAGCGAGGAGTAGGGACGACAATTCAGAATGGATTCTGGATCTTCGTGGACATGGCGAGCGGGAGATACCTGTGGAGGAATTTGAACGGATCAAATCAGGCCGCCAAGGTTGAGAGT

Coding sequence (CDS)

ATGTGTCCTCTCCGATTCATCCTCGTGTTCCTCTCCGCAGTTCTGGCCGGATACGTCGCCTGGAGATCCGCTTCTTCTTCTTCGATTTCGTCCTCCGATGTCGCTTCGGAGAAATCGCCGCCGTCCGACGAGAAGCGAGGAGTAGGGACGACAATTCAGAATGGATTCTGGATCTTCGTGGACATGGCGAGCGGGAGATACCTGTGGAGGAATTTGAACGGATCAAATCAGGCCGCCAAGGTTGAGAGT

Protein sequence

MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFVDMASGRYLWRNLNGSNQAAKVES

Homology

[Close]

BLAST of MS017077 vs. NCBI nr
Match: XP_022156242.1 (uncharacterized protein LOC111023174 [Momordica charantia])

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV 60
          MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV 60

Query: 61 DMASGRYLWRNLNGSNQAAKVES 84
          DMASGRYLWRNLNGSNQAAKVES
Sbjct: 61 DMASGRYLWRNLNGSNQAAKVES 83

[Close]

BLAST of MS017077 vs. NCBI nr
Match: KAG6595503.1 (hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027489.1 hypothetical protein SDJN02_11502, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 63/101 (62.38%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 1   MCPLRFILVFLSAVLAGYVAWRSASSSSISSSD------VASEKSPPSDEKR-------G 60
           MCPLRFILVFLSA+LAGYVAWRSASSSS SSS       V SEKSP   E R       G
Sbjct: 1   MCPLRFILVFLSAILAGYVAWRSASSSSSSSSSSDLFPAVESEKSPLESENRRVEEDGFG 60

Query: 61  VGTTIQNGFWIFVDMASGRYLWRNLNGS-----NQAAKVES 84
           +   IQ GFWIFVDMASGR+LWRNL+ S     +   KVES
Sbjct: 61  LKKMIQKGFWIFVDMASGRFLWRNLHSSALDKDHHGEKVES 101

[Close]

BLAST of MS017077 vs. NCBI nr
Match: XP_038882347.1 (uncharacterized protein LOC120073608 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 7.1e-18
Identity = 58/92 (63.04%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVA----------SEKSPPSDEKR---- 60
          MCPLRFILVFLSA+LAGY AWRSASSSS SSS  +          S+KSP   E R    
Sbjct: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSDIFQATEDSDKSPAETENRSVTE 60

Query: 61 ---GVGTTIQNGFWIFVDMASGRYLWRNLNGS 76
             G+  TIQNGFW FVDMASGR+LWRNLN S
Sbjct: 61 DGFGLKRTIQNGFWTFVDMASGRFLWRNLNAS 92

[Close]

BLAST of MS017077 vs. NCBI nr
Match: KAE8649374.1 (hypothetical protein Csa_021566 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 9.3e-18
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV-----ASEKSPPSDEKR-------GV 60
          MCPLRFIL+FLSA+LAGY AWRSASSSS SSSD+     AS+KS P +E R       GV
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSS-SSSDIFQATEASDKSAPENENRSGTEDRLGV 60

Query: 61 GTTIQNGFWIFVDMASGRYLWRNLNG 75
             ++ GFW FVDMASGR+LWRNLNG
Sbjct: 61 NRMVEKGFWTFVDMASGRFLWRNLNG 85

[Close]

BLAST of MS017077 vs. NCBI nr
Match: KAF2288187.1 (hypothetical protein GH714_004873 [Hevea brasiliensis])

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSS----SISSSDVASEKSPPSDEKR-GVGTTIQNG 60
          MCPLRFILVF SAVLAGY AWR+  SS    SI+S D A E+ P +D++   V   IQNG
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSSPEIESINSDDSAVERKPLNDKQEFNVNKMIQNG 60

Query: 61 FWIFVDMASGRYLWRNLNGSNQAAKVES 84
          FW+FVDMASG+YLWRNL    +  KV+S
Sbjct: 61 FWVFVDMASGKYLWRNLKEMRKDEKVKS 88

[Close]

BLAST of MS017077 vs. ExPASy TrEMBL
Match: A0A6J1DRJ4 (uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023174 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV 60
          MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV
Sbjct: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV 60

Query: 61 DMASGRYLWRNLNGSNQAAKVES 84
          DMASGRYLWRNLNGSNQAAKVES
Sbjct: 61 DMASGRYLWRNLNGSNQAAKVES 83

[Close]

BLAST of MS017077 vs. ExPASy TrEMBL
Match: A0A0A0KWN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDV-----ASEKSPPSDEKR-------GV 60
          MCPLRFIL+FLSA+LAGY AWRSASSSS SSSD+     AS+KS P +E R       GV
Sbjct: 1  MCPLRFILLFLSAILAGYFAWRSASSSS-SSSDIFQATEASDKSAPENENRSGTEDRLGV 60

Query: 61 GTTIQNGFWIFVDMASGRYLWRNLNGS 76
             ++ GFW FVDMASGR+LWRNLNGS
Sbjct: 61 NRMVEKGFWTFVDMASGRFLWRNLNGS 86

[Close]

BLAST of MS017077 vs. ExPASy TrEMBL
Match: A0A6A6KHE5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004873 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSS----SISSSDVASEKSPPSDEKR-GVGTTIQNG 60
          MCPLRFILVF SAVLAGY AWR+  SS    SI+S D A E+ P +D++   V   IQNG
Sbjct: 1  MCPLRFILVFFSAVLAGYFAWRTVRSSPEIESINSDDSAVERKPLNDKQEFNVNKMIQNG 60

Query: 61 FWIFVDMASGRYLWRNLNGSNQAAKVES 84
          FW+FVDMASG+YLWRNL    +  KV+S
Sbjct: 61 FWVFVDMASGKYLWRNLKEMRKDEKVKS 88

[Close]

BLAST of MS017077 vs. ExPASy TrEMBL
Match: A0A5A7V0V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00360 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.4e-17
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVAS-------------EKSPPSDEKR- 60
          MCPLRFILVFLSA+LAGY AWRSASSSS SSS  +S             +KS P +E R 
Sbjct: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61 ------GVGTTIQNGFWIFVDMASGRYLWRNLNGS 76
                GV   ++NGFW FVDMASGR+LWRN+N S
Sbjct: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNES 95

[Close]

BLAST of MS017077 vs. ExPASy TrEMBL
Match: A0A1S3B5E4 (uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.4e-17
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVAS-------------EKSPPSDEKR- 60
          MCPLRFILVFLSA+LAGY AWRSASSSS SSS  +S             +KS P +E R 
Sbjct: 1  MCPLRFILVFLSAILAGYFAWRSASSSSSSSSSSSSSSSSDIFQATEAPDKSAPQNENRS 60

Query: 61 ------GVGTTIQNGFWIFVDMASGRYLWRNLNGS 76
                GV   ++NGFW FVDMASGR+LWRN+N S
Sbjct: 61 VREDGFGVKRMVENGFWTFVDMASGRFLWRNMNES 95

[Close]

BLAST of MS017077 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-16
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSS-SISSSDVASEKSPPSDEKRGVGTTIQNGFWIF 60
          MCP+RF+LVF SAVLAGY AW++ SSS    S D  +EK   + +K+     ++NGFW+F
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNEKQELNLKKK-----MENGFWVF 60

Query: 61 VDMASGRYLWRNL 73
          VDMASGRYLWRNL
Sbjct: 61 VDMASGRYLWRNL 68

[Close]

BLAST of MS017077 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-15
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEKRGVGTTIQNGFWIFV 60
          MCPLRF+LVF SAVLAGY+AWR+ +S+    SD   +      +       + NG W FV
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQGLDFKRKMDNGLWTFV 60

Query: 61 DMASGRYLWRNLNGSNQAAK 81
          DMASGRYLWRNL    Q ++
Sbjct: 61 DMASGRYLWRNLKEMRQRSQ 80

[Close]

BLAST of MS017077 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MCPLRFILVFLSAVLAGYVAWRSASSSSISSSDVASEKSPPSDEK-----RGVGTTIQNG 60
          MCPLR IL+FLSA LAG+   +  +S+S    D +   +  +D+        VG  +++G
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWIFVDMASGRYLWRNL 73
          FW  VDMASGRYLW NL
Sbjct: 61 FWTCVDMASGRYLWNNL 77

The following BLAST results are available for this feature:

BLAST of MS017077 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156242.1	8.9e-37	100.00	uncharacterized protein LOC111023174 [Momordica charantia]	[more]
KAG6595503.1	1.4e-18	62.38	hypothetical protein SDJN03_12056, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038882347.1	7.1e-18	63.04	uncharacterized protein LOC120073608 [Benincasa hispida]	[more]
KAE8649374.1	9.3e-18	65.12	hypothetical protein Csa_021566 [Cucumis sativus]	[more]
KAF2288187.1	7.8e-17	60.23	hypothetical protein GH714_004873 [Hevea brasiliensis]	[more]

BLAST of MS017077 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017077 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRJ4	4.3e-37	100.00	uncharacterized protein LOC111023174 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0KWN3	1.5e-18	65.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G192100 PE=4 SV=1	[more]
A0A6A6KHE5	3.8e-17	60.23	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004873 PE=4 SV=1	[more]
A0A5A7V0V1	8.4e-17	57.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5E4	8.4e-17	57.89	uncharacterized protein LOC103485982 OS=Cucumis melo OX=3656 GN=LOC103485982 PE=...	[more]

BLAST of MS017077 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18150.1	1.9e-16	58.90	Methyltransferase-related protein	[more]
AT5G14602.1	2.1e-15	50.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G58375.1	2.0e-10	45.45	Methyltransferase-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..82
None	No IPR available	PANTHER	PTHR34132:SF2	EMB\|CAB87627.1-RELATED	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017077.1	MS017077.1	mRNA