MS017072 (gene) Bitter gourd (TR) v1

Overview


Name	MS017072
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ethylene-responsive transcription factor RAP2-11-like
Location	scaffold197: 1248294 .. 1249001 (+)
RNA-Seq Expression	MS017072
Synteny	MS017072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCCACTTCCAGCCGCCGGAGACGAACGGCGGCAAGCCCAGCAAATTCCGGGGCAGAAGCAGAGGAAACAACGGCAACAAATTCGTCGGCGTCCGGCAGCGGCCGTCGGGGCGGTGGGTGGCGGAGATCAAAGACACGACGAAGAAAATCCGAATGTGGCTGGGAACTTTCGAGACCGCCGAGGAGGCGGCGCGTGCGTACGACGAAGCCGCGTGCCTCCTCCGCGGCTCCAATACTCGCACCAATTTCATCCCCCAAATCTCCACAAATTCCCCAATCGCCTCCCGAATCCGCTCTCTCCTCAACACCAAAAAAGCCCCAAAAACCCTAGAAATCGCCGCCCCCTCCGTTTCCGTTTCCGTTTCCGTTTCTTCTCCGGCGATTCCGGACGCCCGGCTGTTCGACGGCGCCTACAAGCCCGACATGAGCAGTTTCCGGCGAGAAACGGAAACGGAAACAGAAACAGAAACCGAGAGGGGTTCTCGTTCTGATTCTGATTGCTGTTCTGGAATTGGGATTTCGGGGTTTCCGGCGACGGATTCGGAGGATTTGGAATTGTGTGCTTTCGAGAGGATGAAAGTGGAGAGGCAGATTTCGGCTTCCTTGTACGCCATTAATGGAGTTCAGGAGTACATGGAGGCTGTTCATGAGCCATCTTCGGAGGCCATTTGGGATCTTCCACCACTCTGTTCCTTGTTCTGT

mRNA sequence

ATGGAAATCCACTTCCAGCCGCCGGAGACGAACGGCGGCAAGCCCAGCAAATTCCGGGGCAGAAGCAGAGGAAACAACGGCAACAAATTCGTCGGCGTCCGGCAGCGGCCGTCGGGGCGGTGGGTGGCGGAGATCAAAGACACGACGAAGAAAATCCGAATGTGGCTGGGAACTTTCGAGACCGCCGAGGAGGCGGCGCGTGCGTACGACGAAGCCGCGTGCCTCCTCCGCGGCTCCAATACTCGCACCAATTTCATCCCCCAAATCTCCACAAATTCCCCAATCGCCTCCCGAATCCGCTCTCTCCTCAACACCAAAAAAGCCCCAAAAACCCTAGAAATCGCCGCCCCCTCCGTTTCCGTTTCCGTTTCCGTTTCTTCTCCGGCGATTCCGGACGCCCGGCTGTTCGACGGCGCCTACAAGCCCGACATGAGCAGTTTCCGGCGAGAAACGGAAACGGAAACAGAAACAGAAACCGAGAGGGGTTCTCGTTCTGATTCTGATTGCTGTTCTGGAATTGGGATTTCGGGGTTTCCGGCGACGGATTCGGAGGATTTGGAATTGTGTGCTTTCGAGAGGATGAAAGTGGAGAGGCAGATTTCGGCTTCCTTGTACGCCATTAATGGAGTTCAGGAGTACATGGAGGCTGTTCATGAGCCATCTTCGGAGGCCATTTGGGATCTTCCACCACTCTGTTCCTTGTTCTGT

Coding sequence (CDS)

ATGGAAATCCACTTCCAGCCGCCGGAGACGAACGGCGGCAAGCCCAGCAAATTCCGGGGCAGAAGCAGAGGAAACAACGGCAACAAATTCGTCGGCGTCCGGCAGCGGCCGTCGGGGCGGTGGGTGGCGGAGATCAAAGACACGACGAAGAAAATCCGAATGTGGCTGGGAACTTTCGAGACCGCCGAGGAGGCGGCGCGTGCGTACGACGAAGCCGCGTGCCTCCTCCGCGGCTCCAATACTCGCACCAATTTCATCCCCCAAATCTCCACAAATTCCCCAATCGCCTCCCGAATCCGCTCTCTCCTCAACACCAAAAAAGCCCCAAAAACCCTAGAAATCGCCGCCCCCTCCGTTTCCGTTTCCGTTTCCGTTTCTTCTCCGGCGATTCCGGACGCCCGGCTGTTCGACGGCGCCTACAAGCCCGACATGAGCAGTTTCCGGCGAGAAACGGAAACGGAAACAGAAACAGAAACCGAGAGGGGTTCTCGTTCTGATTCTGATTGCTGTTCTGGAATTGGGATTTCGGGGTTTCCGGCGACGGATTCGGAGGATTTGGAATTGTGTGCTTTCGAGAGGATGAAAGTGGAGAGGCAGATTTCGGCTTCCTTGTACGCCATTAATGGAGTTCAGGAGTACATGGAGGCTGTTCATGAGCCATCTTCGGAGGCCATTTGGGATCTTCCACCACTCTGTTCCTTGTTCTGT

Protein sequence

MEIHFQPPETNGGKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLEIAAPSVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSDCCSGIGISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSEAIWDLPPLCSLFC

Homology

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BLAST of MS017072 vs. NCBI nr
Match: XP_038883288.1 (ethylene-responsive transcription factor ERN1-like [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 6.4e-80
Identity = 179/256 (69.92%), Postives = 191/256 (74.61%), Query Frame = 0


Query: 1   MEIHFQPPETNGG------KPSKFRGRSRG-NNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ PET+GG      K SKF+GRSRG NNGNKFVGVRQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPETHGGAAVSVIKTSKFKGRSRGNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKA----- 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK      
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKS 120

Query: 121 ---PKTLEIAAPSVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRS 180
              P T   AA + S   +V+ P+I D  LFDGAYKPDM++   E E             
Sbjct: 121 LENPTTTSAAAAATS---AVADPSIQDDGLFDGAYKPDMTNCLEEREV---------GYC 180

Query: 181 DSDCCSGIGISGFP-----ATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEP 237
           DS C    G+ G P       +SE+LELCAFERMKVERQISASLYAINGVQEYMEAVHE 
Sbjct: 181 DSSCSVSCGL-GVPLPENVTANSEELELCAFERMKVERQISASLYAINGVQEYMEAVHE- 240

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BLAST of MS017072 vs. NCBI nr
Match: XP_023518070.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo] >XP_023521910.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 4.1e-79
Identity = 176/264 (66.67%), Postives = 196/264 (74.24%), Query Frame = 0


Query: 1   MEIHFQPPETNG------GKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEIHFQ P T+G      GK SKF+GR+RGNN NKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGTHGGATASLGKSSKFKGRTRGNNANKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLEI 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLN++K P    +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNSRKNPILNPL 120

Query: 121 AAPSVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSD---CCS 180
              S   + + ++P I D RLFDGAYKPDM++   ETE  ++  ++    SDS      S
Sbjct: 121 KNHS---AAAAAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLGASS 180

Query: 181 GIG-ISG---------FPAT---------DSEDLELCAFERMKVERQISASLYAINGVQE 237
           G+G + G         FP            SEDLEL AFERMKVERQISASLYA+NGVQE
Sbjct: 181 GVGFVDGLSMVQESMKFPVNAAAFQAEGEHSEDLELSAFERMKVERQISASLYAMNGVQE 240

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BLAST of MS017072 vs. NCBI nr
Match: XP_022925003.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >KAG6595498.1 Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027484.1 Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 4.6e-78
Identity = 173/265 (65.28%), Postives = 193/265 (72.83%), Query Frame = 0


Query: 1   MEIHFQPPETNG------GKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEIHFQ P T+G      GK SKF+GR+RGNN NKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGTHGGATASLGKSSKFKGRTRGNNANKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLEI 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLN++K     +I
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNSRKN----QI 120

Query: 121 AAPSVS-VSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSDCCSGI 180
             P  +  + +V++P I D RLFDGAYKPDM++   ETE  ++  ++    SDS      
Sbjct: 121 LNPLKNHPAAAVAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLGAS 180

Query: 181 GISGF----------------------PATDSEDLELCAFERMKVERQISASLYAINGVQ 237
              GF                       +  SEDLEL AFERMKVERQISASLYA+NGVQ
Sbjct: 181 SGGGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMNGVQ 240

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BLAST of MS017072 vs. NCBI nr
Match: XP_008441991.1 (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis melo] >KAA0060097.1 ethylene-responsive transcription factor RAP2-11-like [Cucumis melo var. makuwa] >TYK08411.1 ethylene-responsive transcription factor RAP2-11-like [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 7.8e-78
Identity = 170/253 (67.19%), Postives = 187/253 (73.91%), Query Frame = 0


Query: 1   MEIHFQPPETNGG-------KPSKFRGRSR-GNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI FQ  E +GG       K +KF+GR+R  NNGNKFVGVRQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTL 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK     
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120

Query: 121 EIAAPSVSVSVSVSS----PAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSD 180
            +  P+ SV+ S  S    P+I D  LF+GAYKPDM++   E E            S   
Sbjct: 121 PLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVS----------SCDS 180

Query: 181 CCS-----GIGISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSE 237
           CCS     G+ ++      SE+LELCAFERMKVERQISASLYAINGVQEYMEAVHE ++E
Sbjct: 181 CCSESCELGVSLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHE-ANE 240

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BLAST of MS017072 vs. NCBI nr
Match: XP_004149126.1 (ethylene-responsive transcription factor ERN1 [Cucumis sativus] >KAE8649371.1 hypothetical protein Csa_019129 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 171/252 (67.86%), Postives = 186/252 (73.81%), Query Frame = 0


Query: 1   MEIHFQPPETNGG------KPSKFRGRSR-GNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ PE + G      K +KF+GR+R  NNGNKFVGVRQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPEIHRGATASIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLE 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK      
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKP 120

Query: 121 IAAPSVSVSVSVSS----PAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSDC 180
              P+ S +VS  S    P+I D  LF+GAYKPDM++   E E            S   C
Sbjct: 121 PEKPTTSAAVSAGSAVVDPSIKDDGLFEGAYKPDMTNCLEEREVS----------SCDSC 180

Query: 181 CS-----GIGISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSEA 237
           CS     G+ ++      SE+LELCAFERMKVERQISASLYAINGVQEYMEAVHE +SE 
Sbjct: 181 CSESCELGVSLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHE-ASEP 240

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BLAST of MS017072 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-64
Identity = 149/270 (55.19%), Postives = 177/270 (65.56%), Query Frame = 0


Query: 1   MEIHFQPP-----ETNGGKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMW 60
           MEI FQ P     +  G K  KF+GR+R +N NKFVGVRQRPSGRWVAEIKDTT+KIRMW
Sbjct: 1   MEIQFQQPNLQQHQKAGTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMW 60

Query: 61  LGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPK----- 120
           LGTFETAEEAARAYDEAACLLRGSNTRTNFI  +S +SP+ASRIR+LLN KK  K     
Sbjct: 61  LGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGNKKQEGV 120

Query: 121 -----TLEIAAPSVSVSV--------------SVSSPAIPDARLFDGAYKPDMSSFRRET 180
                 +++ APS S +               S+SS  + +  LFD AYKPD+S+ + + 
Sbjct: 121 VDVGVDVDVPAPSASTTSTSSNTSNSDKNDHNSLSSGKVQNTMLFDDAYKPDLSNCKEDF 180

Query: 181 ET-ETETETERGSRSDSDCCSGIGISGFPAT----DSEDLELCAFERMKVERQISASLYA 237
           ++   ++    G     D      I   P T    D+  LEL  FERMKVERQISASLYA
Sbjct: 181 QSCPPQSNFSWGFGPVFDRFPIAQILDMPKTDGMIDAASLELSEFERMKVERQISASLYA 240

[Close]

BLAST of MS017072 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.1e-64
Identity = 152/277 (54.87%), Postives = 176/277 (63.54%), Query Frame = 0


Query: 1   MEIHFQPPETNG--------GKPSKFRGRSR-GNNGNKFVGVRQRPSGRWVAEIKDTTKK 60
           MEI FQ P             K  KF+GR+R  NN NKFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKT 120
           IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFI  +S +SP+ASRIR+LLN +K  K 
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 121 LE----IAAPSVSVSV----------------SVSSPAIPDARLFDGAYKPDMSSFRRET 180
            E     +APS S +                 ++S+ A  +  LF+ AYKPD+S+ +   
Sbjct: 121 QEDGAVASAPSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLSNCKEVF 180

Query: 181 ETETETETERGSRSDSDCCSGIGISGF------------PATDSEDLELCAFERMKVERQ 237
           E+        GS+S+  C  G     F              TD+  LEL  FERMKVERQ
Sbjct: 181 ES--------GSQSNISCGFGPFFDHFSFTQLLDMAKNDDITDASSLELSEFERMKVERQ 240

[Close]

BLAST of MS017072 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 5.5e-42
Identity = 127/318 (39.94%), Postives = 163/318 (51.26%), Query Frame = 0


Query: 1   MEIHFQPPETN--GGKPSKFRGRS-RGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLG 60
           MEI F  P+ +    K +KF+GR+ +    +KFVGVRQRPSGR+VAEIKDTT+ IRMWLG
Sbjct: 1   MEIQFDEPKKSLRPKKVNKFKGRNKKSETRDKFVGVRQRPSGRYVAEIKDTTQNIRMWLG 60

Query: 61  TFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK---------- 120
           TFETAEEAARAYDEAA LLRGS TRTNF+  +S +SP+ASRIR LLN +K          
Sbjct: 61  TFETAEEAARAYDEAATLLRGSKTRTNFVTHVSYDSPLASRIRHLLNNRKKGTKQQDMNG 120

Query: 121 -------------------------------------------------APKTLEIAAPS 180
                                                            +     +A+ S
Sbjct: 121 ISSTTSHADTTNDTTSDGSTSSTTNCIGTASGAINSTSASGVTSTSTNISTSASGVASTS 180

Query: 181 VSVSVSVSSPAIPD--------------ARLFDGAYKPDMSSFRRETET---ETETETER 233
             +S + S+  + D                LF+ AY+PDMS+   E E+   ++    + 
Sbjct: 181 TDISTNSSNTNVNDKSESLLSSSTTMQKPNLFEDAYRPDMSNLTNEYESSSYKSNVSWDF 240

[Close]

BLAST of MS017072 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-36
Identity = 110/252 (43.65%), Postives = 139/252 (55.16%), Query Frame = 0


Query: 17  KFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 76
           K + +S+GN   KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKGNK-TKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 77  RGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKT-------------------LEIAAP 136
           RGSNTRTNF      NS ++ +IR+LL+ K++ K                    +  A  
Sbjct: 70  RGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTATS 129

Query: 137 SVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETE-----TETETERGSRSDSDCCSG 196
             + + + ++ AIP     +  Y+PD SS   + ETE            G          
Sbjct: 130 LTTTTTTTTTTAIP----LNNVYRPD-SSVIGQPETEGLQLPYSWPLVSGFNHQIPLAQA 189

Query: 197 IGISGFPATD--SEDLELCAFERMKVERQISASLYAINGVQEYME------AVHEPSSEA 237
            G +     D  S D  L   E   +ERQISASLYA+NG   Y +      A+ +P ++ 
Sbjct: 190 GGETHGHLNDHYSTDQHLGLAE---IERQISASLYAMNGANSYYDNMNAEYAIFDP-TDP 249

[Close]

BLAST of MS017072 vs. ExPASy Swiss-Prot
Match: A9Y0K9 (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 26  NGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 85
           N +KFVGVRQR SG+W AEIKDT+K IRMWLGT++TAEEAARAYDEAA LLRG+NTRTNF
Sbjct: 21  NRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAAFLLRGTNTRTNF 80

Query: 86  --IPQISTNSPIASRIRSLLNTK 107
                I TNSPI+ ++++LL+ K
Sbjct: 81  STTHSIPTNSPISLKLKNLLHRK 103

[Close]

BLAST of MS017072 vs. ExPASy TrEMBL
Match: A0A6J1EE15 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111432381 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.2e-78
Identity = 173/265 (65.28%), Postives = 193/265 (72.83%), Query Frame = 0


Query: 1   MEIHFQPPETNG------GKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEIHFQ P T+G      GK SKF+GR+RGNN NKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGTHGGATASLGKSSKFKGRTRGNNANKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLEI 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLN++K     +I
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNSRKN----QI 120

Query: 121 AAPSVS-VSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSDCCSGI 180
             P  +  + +V++P I D RLFDGAYKPDM++   ETE  ++  ++    SDS      
Sbjct: 121 LNPLKNHPAAAVAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLGAS 180

Query: 181 GISGF----------------------PATDSEDLELCAFERMKVERQISASLYAINGVQ 237
              GF                       +  SEDLEL AFERMKVERQISASLYA+NGVQ
Sbjct: 181 SGGGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMNGVQ 240

[Close]

BLAST of MS017072 vs. ExPASy TrEMBL
Match: A0A5A7UZM7 (Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00240 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.8e-78
Identity = 170/253 (67.19%), Postives = 187/253 (73.91%), Query Frame = 0


Query: 1   MEIHFQPPETNGG-------KPSKFRGRSR-GNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI FQ  E +GG       K +KF+GR+R  NNGNKFVGVRQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTL 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK     
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120

Query: 121 EIAAPSVSVSVSVSS----PAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSD 180
            +  P+ SV+ S  S    P+I D  LF+GAYKPDM++   E E            S   
Sbjct: 121 PLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVS----------SCDS 180

Query: 181 CCS-----GIGISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSE 237
           CCS     G+ ++      SE+LELCAFERMKVERQISASLYAINGVQEYMEAVHE ++E
Sbjct: 181 CCSESCELGVSLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHE-ANE 240

[Close]

BLAST of MS017072 vs. ExPASy TrEMBL
Match: A0A1S3B5E8 (ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo OX=3656 GN=LOC103485987 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.8e-78
Identity = 170/253 (67.19%), Postives = 187/253 (73.91%), Query Frame = 0


Query: 1   MEIHFQPPETNGG-------KPSKFRGRSR-GNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI FQ  E +GG       K +KF+GR+R  NNGNKFVGVRQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTL 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKK     
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120

Query: 121 EIAAPSVSVSVSVSS----PAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSD 180
            +  P+ SV+ S  S    P+I D  LF+GAYKPDM++   E E            S   
Sbjct: 121 PLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVS----------SCDS 180

Query: 181 CCS-----GIGISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSE 237
           CCS     G+ ++      SE+LELCAFERMKVERQISASLYAINGVQEYMEAVHE ++E
Sbjct: 181 CCSESCELGVSLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHE-ANE 240

[Close]

BLAST of MS017072 vs. ExPASy TrEMBL
Match: A0A6J1HMY7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111466085 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.2e-77
Identity = 174/267 (65.17%), Postives = 196/267 (73.41%), Query Frame = 0


Query: 1   MEIHFQPPETNG------GKPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEIHFQ P  +G      GK SKF+GR+RG+N NKF+GVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGIHGGATASLGKSSKFKGRTRGSNANKFLGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAP--KTL 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLN +K P    L
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNGRKNPILSPL 120

Query: 121 EIAAP-SVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSD--- 180
               P + + + + ++P I D RLFDGAYKPDM++   ETE  ++  ++    SDS    
Sbjct: 121 RNHPPAAAAAAAAAAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLG 180

Query: 181 CCSGIG-ISG---------FP---------ATDSEDLELCAFERMKVERQISASLYAING 237
             SG G + G         FP         +  SEDLEL AFERMKVERQISASLYA+NG
Sbjct: 181 ASSGAGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMNG 240

[Close]

BLAST of MS017072 vs. ExPASy TrEMBL
Match: A0A6J1ISK7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111478312 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.5e-76
Identity = 165/243 (67.90%), Postives = 186/243 (76.54%), Query Frame = 0


Query: 1   MEIHFQPPETNGG------KPSKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEIHFQ PET+GG      K SKF+G++RGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQISTNSPIASRIRSLLNTKKAPKTLE 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQISTNSPIASRIR+LLN+KK+     
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKS----- 120

Query: 121 IAAPSVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETETETETERGSRSDSDCCSGI 180
           +  P+ + + +V +P I D R+ DG YKPDM        T    +TE GS   SD C   
Sbjct: 121 LENPAAASAAAVPAPTIQDGRMLDGDYKPDM--------TNCSEKTEMGSCCSSDSCR-- 180

Query: 181 GISGFPATDSEDLELCAFERMKVERQISASLYAINGVQEYMEAVHEPSSEAIWDLPPLCS 237
            + GF   +S+DLE C FERMKVERQIS  LYA+NGV EYMEAVHE +SE+IWDLPPL S
Sbjct: 181 FVDGF--WNSDDLEFCDFERMKVERQISGCLYAMNGVHEYMEAVHE-ASESIWDLPPLGS 225

[Close]

BLAST of MS017072 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 152.9 bits (385), Expect = 3.2e-37
Identity = 110/252 (43.65%), Postives = 139/252 (55.16%), Query Frame = 0


Query: 17  KFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 76
           K + +S+GN   KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKGNK-TKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 77  RGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKT-------------------LEIAAP 136
           RGSNTRTNF      NS ++ +IR+LL+ K++ K                    +  A  
Sbjct: 70  RGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTATS 129

Query: 137 SVSVSVSVSSPAIPDARLFDGAYKPDMSSFRRETETE-----TETETERGSRSDSDCCSG 196
             + + + ++ AIP     +  Y+PD SS   + ETE            G          
Sbjct: 130 LTTTTTTTTTTAIP----LNNVYRPD-SSVIGQPETEGLQLPYSWPLVSGFNHQIPLAQA 189

Query: 197 IGISGFPATD--SEDLELCAFERMKVERQISASLYAINGVQEYME------AVHEPSSEA 237
            G +     D  S D  L   E   +ERQISASLYA+NG   Y +      A+ +P ++ 
Sbjct: 190 GGETHGHLNDHYSTDQHLGLAE---IERQISASLYAMNGANSYYDNMNAEYAIFDP-TDP 249

[Close]

BLAST of MS017072 vs. TAIR 10
Match: AT4G11140.1 (cytokinin response factor 1 )

HSP 1 Score: 82.0 bits (201), Expect = 6.9e-16
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 29  KFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIP 88
           KF GVRQRP G+W AEI+D ++++R+WLGTF+TAEEAA  YD AA  LRG N   NF P
Sbjct: 86  KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPP 144

[Close]

BLAST of MS017072 vs. TAIR 10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 16  SKFRGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 75
           SK + +     G +F+GVR+RP GR+ AEI+D T K R WLGTF+TAEEAA AYD AA  
Sbjct: 6   SKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARS 65

Query: 76  LRGSNTRTNFIPQISTNSPIASRIRSLLNTKKAPKTLEIAAP 118
           +RG+  RTNF   + ++ P +S + S+++    P      AP
Sbjct: 66  MRGTRARTNF---VYSDMPPSSSVTSIVSPDDPPPPPPPPAP 104

[Close]

BLAST of MS017072 vs. TAIR 10
Match: AT1G80580.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-15
Identity = 60/153 (39.22%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 19  RGRSRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRG 78
           RGR        F+GVR+RP GRW AEI+D   + R WLGTF+TAEEAARAYD AA  LRG
Sbjct: 105 RGRKMPQKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRG 164

Query: 79  SNTRTNFI-----PQISTNSPIASRIRSLLNTKKAPKTLEIAAPSVSVSVSVSSPAIPDA 138
           +  +TNF+     P+    +   +R+R     KK  K       SV   V V+S     A
Sbjct: 165 TKAKTNFVIPPLFPKEIAQAQEDNRMRQKQKKKKKKKV------SVRKCVKVTSV----A 224

Query: 139 RLFDGAYKPDMSSFRRETETETETETERGSRSD 167
           +LFD A   + SS +    +  +   + G   D
Sbjct: 225 QLFDDANFINSSSIKGNVISSIDNLEKMGLELD 247

[Close]

BLAST of MS017072 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-15
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 29  KFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ 88
           KF GVRQRP G+W AEI+D  K++R+WLGT+ TAEEAA  YD AA  LRG +  TNF   
Sbjct: 121 KFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVT 180

Query: 89  ISTNSPIASRIRSLLNTKKAPKTLEIAAPSVSVSVSVSS 128
            +T +   +   S +  KK        + + S S+S SS
Sbjct: 181 PTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISRSS 219

The following BLAST results are available for this feature:

BLAST of MS017072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883288.1	6.4e-80	69.92	ethylene-responsive transcription factor ERN1-like [Benincasa hispida]	[more]
XP_023518070.1	4.1e-79	66.67	ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pep...	[more]
XP_022925003.1	4.6e-78	65.28	ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >KAG6...	[more]
XP_008441991.1	7.8e-78	67.19	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Cucumis melo] ...	[more]
XP_004149126.1	1.3e-77	67.86	ethylene-responsive transcription factor ERN1 [Cucumis sativus] >KAE8649371.1 hy...	[more]

BLAST of MS017072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A1X9PY88	1.3e-64	55.19	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
A2Q5W1	5.1e-64	54.87	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
A9Y0K8	5.5e-42	39.94	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
Q6J9S1	4.5e-36	43.65	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]
A9Y0K9	1.0e-24	69.88	Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of MS017072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE15	2.2e-78	65.28	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A5A7UZM7	3.8e-78	67.19	Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuw...	[more]
A0A1S3B5E8	3.8e-78	67.19	ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HMY7	3.2e-77	65.17	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1ISK7	3.5e-76	67.90	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]

BLAST of MS017072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	3.2e-37	43.65	related to AP2 11	[more]
AT4G11140.1	6.9e-16	62.71	cytokinin response factor 1	[more]
AT5G13910.1	1.5e-15	45.10	Integrase-type DNA-binding superfamily protein	[more]
AT1G80580.1	3.4e-15	39.22	Integrase-type DNA-binding superfamily protein	[more]
AT4G23750.1	4.5e-15	45.45	cytokinin response factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 52..68 score: 70.05 coord: 30..41 score: 52.27
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 29..92 e-value: 1.3E-35 score: 134.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 29..78 e-value: 3.6E-14 score: 52.7
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 29..86 score: 19.756702
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 29..85 e-value: 1.71433E-32 score: 110.824
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 28..87 e-value: 2.6E-23 score: 83.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168
None	No IPR available	PANTHER	PTHR31194:SF1	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2	coord: 14..111
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 136..223 coord: 14..111
None	No IPR available	PANTHER	PTHR31194:SF1	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2	coord: 136..223
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 29..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017072.1	MS017072.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity