MS017068 (gene) Bitter gourd (TR) v1

Overview


Name	MS017068
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	scaffold197: 1144073 .. 1144219 (+)
RNA-Seq Expression	MS017068
Synteny	MS017068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAATTTGATTGGGAAGTTCCGTGGCAAAAAGGAGATTCATTAGCTCGTTATTTAATCAGACTTGGTGAGATGACGAAATCTATAAAAATTATTCAACAAGTTTTGGAAGGAATTCCAGGAGGACCCTTTAAGAATTTAGAAATA

mRNA sequence

GACAAATTTGATTGGGAAGTTCCGTGGCAAAAAGGAGATTCATTAGCTCGTTATTTAATCAGACTTGGTGAGATGACGAAATCTATAAAAATTATTCAACAAGTTTTGGAAGGAATTCCAGGAGGACCCTTTAAGAATTTAGAAATA

Coding sequence (CDS)

GACAAATTTGATTGGGAAGTTCCGTGGCAAAAAGGAGATTCATTAGCTCGTTATTTAATCAGACTTGGTGAGATGACGAAATCTATAAAAATTATTCAACAAGTTTTGGAAGGAATTCCAGGAGGACCCTTTAAGAATTTAGAAATA

Protein sequence

DKFDWEVPWQKGDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI

Homology

[Close]

BLAST of MS017068 vs. NCBI nr
Match: YP_009947871.1 (NADH-plastoquinone oxidoreductase subunit 7 [Cerbera manghas] >QOH92408.1 NADH-plastoquinone oxidoreductase subunit 7 [Cerbera manghas])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQVLEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. NCBI nr
Match: QWK49745.1 (NADH-plastoquinone oxidoreductase subunit 7 [Ulmus lanceifolia] >QZQ52640.1 NADH dehydrogenase subunit H [Ulmus lanceifolia])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQVLEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. NCBI nr
Match: YP_010122689.1 (NADH-plastoquinone oxidoreductase 49 kDa subunit [Acer circinatum] >QRF94427.1 NADH-plastoquinone oxidoreductase 49 kDa subunit [Acer circinatum])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           DKFDWEV WQK GDSLARYL+R+GEMT+S+KIIQQ LEGIPGGP++NLEI
Sbjct: 243 DKFDWEVQWQKEGDSLARYLVRIGEMTESVKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. NCBI nr
Match: YP_009108815.1 (NADH dehydrogenase 49 kDa subunit [Oncinotis tenuiloba] >AIW05659.1 NADH dehydrogenase 49 kDa subunit [Oncinotis tenuiloba])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWE+ WQK GDSLARYL+R+GEMT+SIKIIQQVLEGIPGGP++NLEI
Sbjct: 243 DEFDWEIQWQKEGDSLARYLVRIGEMTESIKIIQQVLEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. NCBI nr
Match: AWH09201.1 (NADH dehydrogenase 49 kDa subunit [Asclepias schaffneri])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGPF+NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPFENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy Swiss-Prot
Match: Q09WW2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=248361 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-18
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy Swiss-Prot
Match: Q09MC0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-18
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+S+KIIQQ LEGIPGGP++NLEI
Sbjct: 245 DEFDWEVQWQKEGDSLARYLVRIGEMTESVKIIQQALEGIPGGPYENLEI 294

[Close]

BLAST of MS017068 vs. ExPASy Swiss-Prot
Match: A1XG11 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Nuphar advena OX=77108 GN=ndhH PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-17
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE 49
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLE
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 291

[Close]

BLAST of MS017068 vs. ExPASy Swiss-Prot
Match: Q6EVZ4 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Nymphaea alba OX=34301 GN=ndhH PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-17
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE 49
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLE
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLE 291

[Close]

BLAST of MS017068 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-17
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+RL EMT+S+KIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRLAEMTESVKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy TrEMBL
Match: A0A2H4NWD8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gustavia serrata OX=1421040 GN=ndhH PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEVPWQK GDSLARYL+R+ EMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVPWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy TrEMBL
Match: A0A2H4NVT5 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gustavia augusta OX=372736 GN=ndhH PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEVPWQK GDSLARYL+R+ EMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVPWQKEGDSLARYLVRISEMTESIKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy TrEMBL
Match: A0A6H0ESV9 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Trichosanthes nervifolia OX=1144448 GN=ndhH PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.4e-16
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+RLGEMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRLGEMTESIKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy TrEMBL
Match: A0A2S1P286 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Asclepias welshii OX=660020 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEI 292

[Close]

BLAST of MS017068 vs. ExPASy TrEMBL
Match: A0A0S0ZHW1 (NdhH (Fragment) OS=Garrya flavescens OX=1197917 GN=ndhH PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLEI 50
           D+FDWEV WQK GDSLARYL+R+GEMT+SIKIIQQ LEGIPGGP++NLEI
Sbjct: 241 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEI 290

[Close]

BLAST of MS017068 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-17
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 1   DKFDWEVPWQK-GDSLARYLIRLGEMTKSIKIIQQVLEGIPGGPFKNLE 49
           D+F+WE+ WQK GDSLARYL+RL EMT+SIKIIQQ LEG+PGGP++NLE
Sbjct: 243 DEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLE 291

The following BLAST results are available for this feature:

BLAST of MS017068 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009947871.1	1.1e-15	84.00	NADH-plastoquinone oxidoreductase subunit 7 [Cerbera manghas] >QOH92408.1 NADH-p...	[more]
QWK49745.1	1.1e-15	84.00	NADH-plastoquinone oxidoreductase subunit 7 [Ulmus lanceifolia] >QZQ52640.1 NADH...	[more]
YP_010122689.1	1.5e-15	82.00	NADH-plastoquinone oxidoreductase 49 kDa subunit [Acer circinatum] >QRF94427.1 N...	[more]
YP_009108815.1	1.5e-15	82.00	NADH dehydrogenase 49 kDa subunit [Oncinotis tenuiloba] >AIW05659.1 NADH dehydro...	[more]
AWH09201.1	1.5e-15	84.00	NADH dehydrogenase 49 kDa subunit [Asclepias schaffneri]	[more]

BLAST of MS017068 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WW2	4.3e-18	82.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Morus indica OX=24836...	[more]
Q09MC0	5.7e-18	80.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Citrus sinensis OX=27...	[more]
A1XG11	1.3e-17	81.63	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Nuphar advena OX=7710...	[more]
Q6EVZ4	1.3e-17	81.63	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Nymphaea alba OX=3430...	[more]
Q4VZL2	1.7e-17	80.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]

BLAST of MS017068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4NWD8	9.4e-16	82.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gustavia serrata OX=1...	[more]
A0A2H4NVT5	9.4e-16	82.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gustavia augusta OX=3...	[more]
A0A6H0ESV9	9.4e-16	84.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Trichosanthes nervifo...	[more]
A0A2S1P286	1.6e-15	82.00	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Asclepias welshii OX=...	[more]
A0A0S0ZHW1	1.6e-15	82.00	NdhH (Fragment) OS=Garrya flavescens OX=1197917 GN=ndhH PE=3 SV=1	[more]

BLAST of MS017068 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	1.7e-17	75.51	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 1..48 e-value: 4.6E-11 score: 44.1
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 3..45
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 1..46 e-value: 6.2E-12 score: 45.2
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 2..49
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017068.1	MS017068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding