MS017064 (gene) Bitter gourd (TR) v1

Overview


Name	MS017064
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BTB domain-containing protein
Location	scaffold197: 1085089 .. 1087572 (+)
RNA-Seq Expression	MS017064
Synteny	MS017064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGGAAGAAATTTAGAACAACATTAGATACGTTGACTCAGCGTGAGCCGGATTCGATGCTTGCTGCAATGTTTAGTGGCCGGCATACCTTATGCCAGGATCCTGAGGAGGTGGGCGTTTTCACAGTTTTGGATTTTGTTTTGTTGAACAAGTAGTAATTCGTTTTATTTCAACGGGAAGACAATTGGATGTTTGTGGAAATATGTTGAGGTTCTACTACCATGGAACTTTATTCTTTATTTCACTCTCTTTGTATGTGAGTTTTTATCTTGAAATCTACTCCATCTATATTCCAAACATTAATATTGTATTTGATGCAGGGATCTGTCTTTGTGGACAGGGATGGGAAACATTTTCGACACATTCTCAATTGGTTAAGGGATGGAATAGTTCCAACTCTTTCGGACTCTGAGATTGCAGAGCTTCTGCGGGAGGCAGAGTATTATCAGCTGCTCGTGAGCCATCATTCCTTCTTGTAGTTCAAAAATACATGTTTTAATCATATCCTACTTCCACGAGTTTTTATTTATTTTCCGTGTCAGTTTCTTGTTGAAGGAGTTAGTTTATTTATTAACGGTGAGAGGGCGCTAAAATTTTGATTCAGGGACTTATAGATGGAATCAATGATGTGATAAGTAAAAAGAAGGAAGATGAGGAACTTGAGTCAGAACTGAAGCGTGTTGATATTATCAAGTGTATACAGTCTGAGAAAGTTAGACTGCGTGGGGTTCACCTTTCTGGCCTTGATCTTTCTAAGCTGGTAACTATCTAATTTTTAGAATTGCGGGAAAATAATTTTCTAAATAAAGAAACAATCTTGATATTATACATGAATTTACGAAGGAAAAGGCCAGTACAAGGCAAAATCTTACAATAAAGGCCTCTTGTTTGCGCAAATTGCACCAATAATAATTTGTAGGAGTAAAATTTGGTAAAGTTAGGAGTAAAATCTTTGCCACTAGGGGTTATAGGCAAGTAGACCTGCACCTGCTTCCCCATCTCCCATAAGACTTTAGTGTGGAAAAGAATAAAATTAAGCTAACCCATATACAATTTGCGAAAAATACTGGTTTATTTTGTTTTACTAGGGAAGACTCCTTCAGCTTGCTGAAGAATACTCTTTTTGTTTTTGAGCAAGTATTTCTTTACAATGTGGGCAAGACTCATTCTTGTTATTAGTGACACTTTGAGGAATCCTTACAAAGCCATCTCCCAATGTTTTCTCCTGTTTTAGGATTTAAATTTTATTATGTGTATGGGTCTTCTTCTCATAATTTCCATTTTCTAAGAGCCTAATCTGATATGAAAGTGGATGCACTTTCCACTCTTTTATCCTGTACTTAGGCTATTTGATTGAACTCAAATCCTAGGAATAACCGTCTTTGGCCCCTTGAATCTTCTGGCACTCTCTCATGTAACTCCTCCTTAGACACTTAGCCTCTTCTTGTGCTTTTATTTTTAACCCTTTCCCTCATAGCTCGAGAGAATTCACATCAAAGGTGTTTTTTGGCTAGCTTGTTTTGCATGGGACGATAACACCATAACACCATACAAAGATCTTCTTTCTTTTGTGATTGACCCTCATTGGTGTGCTTATGCAAGCAAGTACCATAGATAATAACTTATATACTCAATCTGTATATACTACTGTCTATTTTTGTAATTATTTTATTTATTGGCTATTTCCAGGAAATTTTTACTTCTTATGTATATCTTGCTATATCTGCAAACGTCTATTTTTTAAGAAGCTGTTGAATGGTGCCAATGCAAGGTCATATATCTAATGTATAAAGCTGTTAAAATTTTCAAATATACAGGACCTTTCATATGTAGACTTCAGCTATGCGTGTCTTAAAAACGTGTTCTTCTCACGTGCAAAACTTCAATGTGCTAAATTTCGGGTATGTACTACTGCAGTTCTATTTTACTACGGATGATTTTTGCATTATAAATTTTAACTATTGTTTTTCCTTAAAGAGTGAAAGTAACTTCCATCAGCCTTCATTGTTTTTGTAAATGTGCAAGGATATGAACTGGTAGTCATTAAAAAGAAGCTTTTCAATATATGTTTCAAGGATGATTCAAAATTTAGCATGTTCCCAATAGATTTGTAGTAATGTCGGTGTTTTTGCATTCTGCATAATGTTTATATCAATAATTTCTTATATTTTAGGGGTTCATCAAAACATTTTAAATTTGTAAAAGTAGAGTCAATACATTATCTGTAAAGAATGCTTCTAATACATGTCCCATTTGGCGTTTTGAACACACAGGACGCAGATGCTGAGGGCTCAATTTTTCATAATGCAACTTTGCGAGAGTAATAAAATCAATACTTGATTTCATAATTATTACAGTTATCAATTTTTCTGAGAACTTCATTCTTAATAATTTTATTTTGCCTAGGAAGATGTGAATTTACTGGAGCAAACCTTCGAGGGGCTTTATTAGCAGCTGCAAATCTCCAGAGCGCCAATTTACAA

mRNA sequence

GGCGGGAAGAAATTTAGAACAACATTAGATACGTTGACTCAGCGTGAGCCGGATTCGATGCTTGCTGCAATGTTTAGTGGCCGGCATACCTTATGCCAGGATCCTGAGGAGGGATCTGTCTTTGTGGACAGGGATGGGAAACATTTTCGACACATTCTCAATTGGTTAAGGGATGGAATAGTTCCAACTCTTTCGGACTCTGAGATTGCAGAGCTTCTGCGGGAGGCAGAGTATTATCAGCTGCTCGGACTTATAGATGGAATCAATGATGTGATAAGTAAAAAGAAGGAAGATGAGGAACTTGAGTCAGAACTGAAGCGTGTTGATATTATCAAGTGTATACAGTCTGAGAAAGTTAGACTGCGTGGGGTTCACCTTTCTGGCCTTGATCTTTCTAAGCTGGACCTTTCATATGTAGACTTCAGCTATGCGTGTCTTAAAAACGTGTTCTTCTCACGTGCAAAACTTCAATGTGCTAAATTTCGGGACGCAGATGCTGAGGGCTCAATTTTTCATAATGCAACTTTGCGAGAGAAATCAATACTTGATTTCATAATTATTTTATCAATTTTTCTGAGAACTTCATTCTTAATAATTTTATTTTGCCTAGGAAGATGTGAATTTACTGGAGCAAACCTTCGAGGGGCTTTATTAGCAGCTGCAAATCTCCAGAGCGCCAATTTACAA

Coding sequence (CDS)

GGCGGGAAGAAATTTAGAACAACATTAGATACGTTGACTCAGCGTGAGCCGGATTCGATGCTTGCTGCAATGTTTAGTGGCCGGCATACCTTATGCCAGGATCCTGAGGAGGGATCTGTCTTTGTGGACAGGGATGGGAAACATTTTCGACACATTCTCAATTGGTTAAGGGATGGAATAGTTCCAACTCTTTCGGACTCTGAGATTGCAGAGCTTCTGCGGGAGGCAGAGTATTATCAGCTGCTCGGACTTATAGATGGAATCAATGATGTGATAAGTAAAAAGAAGGAAGATGAGGAACTTGAGTCAGAACTGAAGCGTGTTGATATTATCAAGTGTATACAGTCTGAGAAAGTTAGACTGCGTGGGGTTCACCTTTCTGGCCTTGATCTTTCTAAGCTGGACCTTTCATATGTAGACTTCAGCTATGCGTGTCTTAAAAACGTGTTCTTCTCACGTGCAAAACTTCAATGTGCTAAATTTCGGGACGCAGATGCTGAGGGCTCAATTTTTCATAATGCAACTTTGCGAGAGAAATCAATACTTGATTTCATAATTATTTTATCAATTTTTCTGAGAACTTCATTCTTAATAATTTTATTTTGCCTAGGAAGATGTGAATTTACTGGAGCAAACCTTCGAGGGGCTTTATTAGCAGCTGCAAATCTCCAGAGCGCCAATTTACAA

Protein sequence

GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGIVPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVRLRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKSILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ

Homology

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BLAST of MS017064 vs. NCBI nr
Match: KAG7033659.1 (FH protein interacting protein FIP2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.3 bits (1004), Expect = 5.5e-105
Identity = 203/229 (88.65%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDP+EGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 40  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPDEGSVFLDRDGKHFRHILNWLRDGI 99

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTL DSEIAELLREAEYYQLLGLIDGIND+ SKKKEDEE +SEL RVDIIKCIQSEKVR
Sbjct: 100 VPTLPDSEIAELLREAEYYQLLGLIDGINDMASKKKEDEEPQSELNRVDIIKCIQSEKVR 159

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+LSGLDLSKLDLSYVDFSYA LKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 160 LRGVNLSGLDLSKLDLSYVDFSYASLKNVFFSRANLQCAKFRDADAEGSIFHNATLREYK 219

Query: 181 ILDF-IIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANL 229
           I    ++  S FLRT+FLIILFCL RCEFTGANLRGALLAAANLQ+A L
Sbjct: 220 INTIHLLHFSNFLRTAFLIILFCLERCEFTGANLRGALLAAANLQNACL 268

[Close]

BLAST of MS017064 vs. NCBI nr
Match: XP_022154529.1 (FH protein interacting protein FIP2 isoform X1 [Momordica charantia])

HSP 1 Score: 387.1 bits (993), Expect = 1.0e-103
Identity = 201/229 (87.77%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR
Sbjct: 76  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. NCBI nr
Match: XP_022154530.1 (FH protein interacting protein FIP2 isoform X2 [Momordica charantia])

HSP 1 Score: 387.1 bits (993), Expect = 1.0e-103
Identity = 201/229 (87.77%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR
Sbjct: 76  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. NCBI nr
Match: XP_011653465.1 (FH protein interacting protein FIP2 isoform X1 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 2.0e-102
Identity = 200/233 (85.84%), Postives = 212/233 (90.99%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 15  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFLDRDGKHFRHILNWLRDGI 74

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VP LSD +++ELLREAEYYQLLGLIDGIND++SK+KEDEE +SELKRVDIIKCIQSEKVR
Sbjct: 75  VPFLSDIDLSELLREAEYYQLLGLIDGINDLLSKRKEDEEPQSELKRVDIIKCIQSEKVR 134

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+L GLDLSKLDLSYVDFSYA LK+VFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 135 LRGVNLCGLDLSKLDLSYVDFSYASLKSVFFSRANLQCAKFRDADAEGSIFHNATLREYK 194

Query: 181 ILDFI----IILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
           I  F     I   IFLR + LII+FCL RCEFTGANLRGALLAAANLQSANLQ
Sbjct: 195 INIFFSSHHIFFLIFLRIA-LIIVFCLERCEFTGANLRGALLAAANLQSANLQ 246

[Close]

BLAST of MS017064 vs. NCBI nr
Match: XP_022978245.1 (FH protein interacting protein FIP2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 6.6e-98
Identity = 191/229 (83.41%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDP+EGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPDEGSVFLDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTL DSEIAELLREAEYYQLLGLIDGIND +SKKKEDEE +SEL RVDIIKCIQSEKVR
Sbjct: 76  VPTLPDSEIAELLREAEYYQLLGLIDGINDAMSKKKEDEEPQSELNRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+LSGLDLSKLDLSYVDFSYA LKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVNLSGLDLSKLDLSYVDFSYASLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.2e-82
Identity = 156/229 (68.12%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKF TT+DTLT REPDSMLAAMFSGRH +CQ+ ++G VF+DRDGKHFRHILNWLRDG+
Sbjct: 16  GGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNWLRDGV 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           +P+LSD + +ELLREA+YYQLLGL DGI D    +KE  E+E+EL R+DIIKCIQ+E+VR
Sbjct: 76  IPSLSDPDCSELLREADYYQLLGLKDGIKD---SRKEVGEVEAELTRIDIIKCIQTERVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
            RGV+LSG+DLSKLDLS VDFSYACL+NVFFSR  LQCAKFR+ADAEGSIFHNA LRE  
Sbjct: 136 FRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNADAEGSIFHNAILRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFT ANLRGALLA  NLQSANLQ
Sbjct: 196 -------------------------CEFTSANLRGALLAGTNLQSANLQ 214

[Close]

BLAST of MS017064 vs. ExPASy Swiss-Prot
Match: Q7L273 (BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens OX=9606 GN=KCTD9 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 72/239 (30.13%), Postives = 115/239 (48.12%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTL-CQDPEEGSVFVDRDGKHFRHILNWLRDG 60
           GG+ F TT  TL  +EPDSMLA MF  +     +    G+  +DR  ++F  ILN+LR G
Sbjct: 96  GGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHG 155

Query: 61  IVPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCI----Q 120
            +       +  +L EA ++ +  LI+ + +V  K  +  E  S + R + ++ +     
Sbjct: 156 QLIVNDGINLLGVLEEARFFGIDSLIEHL-EVAIKNSQPPEDHSPISRKEFVRFLLATPT 215

Query: 121 SEKVRLRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNAT 180
             ++R +G++ SG DLS+LDL Y++F  A L     + A L CA    AD  GS+   A 
Sbjct: 216 KSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCAN 275

Query: 181 LREKSIL-----DFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
           L+   +L        + L  F   S L       +    GANL+G  +  + +   NL+
Sbjct: 276 LQGVKMLCSNAEGASLKLCNFEDPSGL-------KANLEGANLKGVDMEGSQMTGINLR 326

[Close]

BLAST of MS017064 vs. ExPASy Swiss-Prot
Match: Q9H3F6 (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Homo sapiens OX=9606 GN=KCTD10 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.2e-15
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GG  + TT+ TLT++  D+ML AMFSGR  +  D  EG + +DR GKHF  ILN+LRDG 
Sbjct: 39  GGALYYTTMQTLTKQ--DTMLKAMFSGRMEVLTD-SEGWILIDRCGKHFGTILNYLRDGA 98

Query: 61  VP-TLSDSEIAELLREAEYYQLLGLIDGINDVISKK 96
           VP   S  EI ELL EA+YY + GL++     +  K
Sbjct: 99  VPLPESRREIEELLAEAKYYLVQGLVEECQAALQNK 131

[Close]

BLAST of MS017064 vs. ExPASy Swiss-Prot
Match: Q7TPL3 (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Rattus norvegicus OX=10116 GN=Kctd10 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-15
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GG  + TT+ TLT++  D+ML AMFSGR  +  D  EG + +DR GKHF  ILN+LRDG 
Sbjct: 39  GGALYYTTMQTLTKQ--DTMLKAMFSGRMEVLTD-SEGWILIDRCGKHFGTILNYLRDGA 98

Query: 61  VP-TLSDSEIAELLREAEYYQLLGLIDGINDVISKK 96
           VP   S  EI ELL EA+YY + GL++     +  K
Sbjct: 99  VPLPESRREIEELLAEAKYYLVQGLLEECQAALQNK 131

[Close]

BLAST of MS017064 vs. ExPASy Swiss-Prot
Match: Q922M3 (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Mus musculus OX=10090 GN=Kctd10 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-14
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GG  + TT+ TLT++  D+ML AMFSGR  +  D  EG + +DR GKHF  ILN+LRDG 
Sbjct: 39  GGALYYTTMQTLTKQ--DTMLKAMFSGRMEVLTD-SEGWILIDRCGKHFGTILNYLRDGG 98

Query: 61  VP-TLSDSEIAELLREAEYYQLLGLIDGINDVISKK 96
           VP   S  EI ELL EA+YY + GL++     +  K
Sbjct: 99  VPLPESRREIEELLAEAKYYLVQGLLEECQAALQNK 131

[Close]

BLAST of MS017064 vs. ExPASy TrEMBL
Match: A0A6J1DMD8 (FH protein interacting protein FIP2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021783 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.1e-104
Identity = 201/229 (87.77%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR
Sbjct: 76  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. ExPASy TrEMBL
Match: A0A6J1DJV1 (FH protein interacting protein FIP2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021783 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.1e-104
Identity = 201/229 (87.77%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR
Sbjct: 76  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. ExPASy TrEMBL
Match: A0A0A0L1A8 (BTB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G188950 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.5e-103
Identity = 200/233 (85.84%), Postives = 212/233 (90.99%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 15  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFLDRDGKHFRHILNWLRDGI 74

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VP LSD +++ELLREAEYYQLLGLIDGIND++SK+KEDEE +SELKRVDIIKCIQSEKVR
Sbjct: 75  VPFLSDIDLSELLREAEYYQLLGLIDGINDLLSKRKEDEEPQSELKRVDIIKCIQSEKVR 134

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+L GLDLSKLDLSYVDFSYA LK+VFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 135 LRGVNLCGLDLSKLDLSYVDFSYASLKSVFFSRANLQCAKFRDADAEGSIFHNATLREYK 194

Query: 181 ILDFI----IILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
           I  F     I   IFLR + LII+FCL RCEFTGANLRGALLAAANLQSANLQ
Sbjct: 195 INIFFSSHHIFFLIFLRIA-LIIVFCLERCEFTGANLRGALLAAANLQSANLQ 246

[Close]

BLAST of MS017064 vs. ExPASy TrEMBL
Match: A0A6J1ISH2 (FH protein interacting protein FIP2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478285 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.2e-98
Identity = 191/229 (83.41%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDP+EGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPDEGSVFLDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTL DSEIAELLREAEYYQLLGLIDGIND +SKKKEDEE +SEL RVDIIKCIQSEKVR
Sbjct: 76  VPTLPDSEIAELLREAEYYQLLGLIDGINDAMSKKKEDEEPQSELNRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+LSGLDLSKLDLSYVDFSYA LKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVNLSGLDLSKLDLSYVDFSYASLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. ExPASy TrEMBL
Match: A0A6J1IPI8 (FH protein interacting protein FIP2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478285 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.2e-98
Identity = 191/229 (83.41%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDP+EGSVF+DRDGKHFRHILNWLRDGI
Sbjct: 16  GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPDEGSVFLDRDGKHFRHILNWLRDGI 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           VPTL DSEIAELLREAEYYQLLGLIDGIND +SKKKEDEE +SEL RVDIIKCIQSEKVR
Sbjct: 76  VPTLPDSEIAELLREAEYYQLLGLIDGINDAMSKKKEDEEPQSELNRVDIIKCIQSEKVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
           LRGV+LSGLDLSKLDLSYVDFSYA LKNVFFSRA LQCAKFRDADAEGSIFHNATLRE  
Sbjct: 136 LRGVNLSGLDLSKLDLSYVDFSYASLKNVFFSRANLQCAKFRDADAEGSIFHNATLRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFTGANLRGALLAAANLQSANLQ
Sbjct: 196 -------------------------CEFTGANLRGALLAAANLQSANLQ 217

[Close]

BLAST of MS017064 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 305.4 bits (781), Expect = 3.7e-83
Identity = 156/229 (68.12%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKF TT+DTLT REPDSMLAAMFSGRH +CQ+ ++G VF+DRDGKHFRHILNWLRDG+
Sbjct: 16  GGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNWLRDGV 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           +P+LSD + +ELLREA+YYQLLGL DGI D    +KE  E+E+EL R+DIIKCIQ+E+VR
Sbjct: 76  IPSLSDPDCSELLREADYYQLLGLKDGIKD---SRKEVGEVEAELTRIDIIKCIQTERVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
            RGV+LSG+DLSKLDLS VDFSYACL+NVFFSR  LQCAKFR+ADAEGSIFHNA LRE  
Sbjct: 136 FRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNADAEGSIFHNAILRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFT ANLRGALLA  NLQSANLQ
Sbjct: 196 -------------------------CEFTSANLRGALLAGTNLQSANLQ 214

[Close]

BLAST of MS017064 vs. TAIR 10
Match: AT5G55000.1 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 305.4 bits (781), Expect = 3.7e-83
Identity = 156/229 (68.12%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   GGKKFRTTLDTLTQREPDSMLAAMFSGRHTLCQDPEEGSVFVDRDGKHFRHILNWLRDGI 60
           GGKKF TT+DTLT REPDSMLAAMFSGRH +CQ+ ++G VF+DRDGKHFRHILNWLRDG+
Sbjct: 16  GGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNWLRDGV 75

Query: 61  VPTLSDSEIAELLREAEYYQLLGLIDGINDVISKKKEDEELESELKRVDIIKCIQSEKVR 120
           +P+LSD + +ELLREA+YYQLLGL DGI D    +KE  E+E+EL R+DIIKCIQ+E+VR
Sbjct: 76  IPSLSDPDCSELLREADYYQLLGLKDGIKD---SRKEVGEVEAELTRIDIIKCIQTERVR 135

Query: 121 LRGVHLSGLDLSKLDLSYVDFSYACLKNVFFSRAKLQCAKFRDADAEGSIFHNATLREKS 180
            RGV+LSG+DLSKLDLS VDFSYACL+NVFFSR  LQCAKFR+ADAEGSIFHNA LRE  
Sbjct: 136 FRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNADAEGSIFHNAILRE-- 195

Query: 181 ILDFIIILSIFLRTSFLIILFCLGRCEFTGANLRGALLAAANLQSANLQ 230
                                    CEFT ANLRGALLA  NLQSANLQ
Sbjct: 196 -------------------------CEFTSANLRGALLAGTNLQSANLQ 214

The following BLAST results are available for this feature:

BLAST of MS017064 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033659.1	5.5e-105	88.65	FH protein interacting protein FIP2, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022154529.1	1.0e-103	87.77	FH protein interacting protein FIP2 isoform X1 [Momordica charantia]	[more]
XP_022154530.1	1.0e-103	87.77	FH protein interacting protein FIP2 isoform X2 [Momordica charantia]	[more]
XP_011653465.1	2.0e-102	85.84	FH protein interacting protein FIP2 isoform X1 [Cucumis sativus]	[more]
XP_022978245.1	6.6e-98	83.41	FH protein interacting protein FIP2-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MS017064 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SE95	5.2e-82	68.12	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
Q7L273	2.2e-19	30.13	BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens OX=9606 GN=KCTD9 PE=1 SV...	[more]
Q9H3F6	7.2e-15	48.96	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 O...	[more]
Q7TPL3	9.4e-15	48.96	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 O...	[more]
Q922M3	2.1e-14	48.96	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 O...	[more]

BLAST of MS017064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMD8	5.1e-104	87.77	FH protein interacting protein FIP2 isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1DJV1	5.1e-104	87.77	FH protein interacting protein FIP2 isoform X2 OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0L1A8	9.5e-103	85.84	BTB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G188950 PE=4 SV...	[more]
A0A6J1ISH2	3.2e-98	83.41	FH protein interacting protein FIP2-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1IPI8	3.2e-98	83.41	FH protein interacting protein FIP2-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of MS017064 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55000.2	3.7e-83	68.12	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]
AT5G55000.1	3.7e-83	68.12	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000210	BTB/POZ domain	SMART	SM00225	BTB_4	coord: 1..96 e-value: 2.1E-4 score: 30.6
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..99 e-value: 6.8E-28 score: 98.8
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 1..94
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 205..229 e-value: 3.3E-4 score: 20.2 coord: 135..173 e-value: 1.2E-8 score: 34.4
None	No IPR available	GENE3D	2.160.20.80		coord: 112..229 e-value: 2.2E-20 score: 74.2
None	No IPR available	PANTHER	PTHR14136	UNCHARACTERIZED	coord: 1..228
None	No IPR available	PANTHER	PTHR14136:SF22	OS10G0438000 PROTEIN	coord: 1..228
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 117..228
IPR003131	Potassium channel tetramerisation-type BTB domain	PFAM	PF02214	BTB_2	coord: 1..84 e-value: 1.1E-16 score: 60.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017064.1	MS017064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051260	protein homooligomerization
molecular_function	GO:0005515	protein binding