MS017043 (gene) Bitter gourd (TR) v1

Overview
NameMS017043
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncleavage stimulation factor subunit 77 isoform X2
Locationscaffold197: 854406 .. 854688 (-)
RNA-Seq ExpressionMS017043
SyntenyMS017043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTATTCATGTAACTTCCATGTTCAGGATAAAGCAGCCAGTAATAAACTTTTGGATAATTTGAAGTACAATGTTGAAGTGGCCGAAAAAGTTGCTAATGACGCTCAGGTGTGATATTATTACTAGATTTCACATTGCATCTCATCTACTTCCCATTCAATCAGGTTTAAATTTGAGTTTCCTCTTTGATTTAACACTGAATCCAATTATTTGCTGTTAGCGCTTGCCAATATTGGAGGCGACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCT

mRNA sequence

ATTTATTCATGTAACTTCCATGTTCAGGATAAAGCAGCCAGTAATAAACTTTTGGATAATTTGAAGTACAATGTTGAAGTGGCCGAAAAAGTTGCTAATGACGCTCAGCGCTTGCCAATATTGGAGGCGACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCT

Coding sequence (CDS)

ATTTATTCATGTAACTTCCATGTTCAGGATAAAGCAGCCAGTAATAAACTTTTGGATAATTTGAAGTACAATGTTGAAGTGGCCGAAAAAGTTGCTAATGACGCTCAGCGCTTGCCAATATTGGAGGCGACACCATTATATGAGCAACTGCTGACGGTGTATCCCACTGCT

Protein sequence

IYSCNFHVQDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Homology
BLAST of MS017043 vs. NCBI nr
Match: XP_022154466.1 (cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. NCBI nr
Match: XP_022154467.1 (cleavage stimulation factor subunit 77 isoform X2 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. NCBI nr
Match: XP_011653953.1 (cleavage stimulation factor subunit 77 [Cucumis sativus] >KGN55377.2 hypothetical protein Csa_012110 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 7.3e-14
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. NCBI nr
Match: XP_038881157.1 (cleavage stimulation factor subunit 77 [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 7.3e-14
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. NCBI nr
Match: XP_008442046.1 (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. ExPASy Swiss-Prot
Match: Q8GUP1 (Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana OX=3702 GN=CSTF77 PE=1 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 9.3e-04
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 22 KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          KY VE AE +A  A   PI +ATP+YEQLL++YPT+
Sbjct: 4  KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTS 39

BLAST of MS017043 vs. ExPASy TrEMBL
Match: A0A6J1DLS0 (cleavage stimulation factor subunit 77 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021740 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. ExPASy TrEMBL
Match: A0A6J1DNS9 (cleavage stimulation factor subunit 77 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021740 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK+ASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKSASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. ExPASy TrEMBL
Match: A0A0A0L2S4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G593920 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. ExPASy TrEMBL
Match: A0A1S4DUB4 (cleavage stimulation factor subunit 77 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486027 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. ExPASy TrEMBL
Match: A0A1S3B5G2 (cleavage stimulation factor subunit 77 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486027 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 9  QDKAASNKLLDNLKYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          +DK  SNKLLD LKYNVEVAE VA +AQRLPILEATPLYEQLLTVYPTA
Sbjct: 9  KDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTA 57

BLAST of MS017043 vs. TAIR 10
Match: AT1G17760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 6.6e-05
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 22 KYNVEVAEKVANDAQRLPILEATPLYEQLLTVYPTA 58
          KY VE AE +A  A   PI +ATP+YEQLL++YPT+
Sbjct: 4  KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTS 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154466.13.5e-1695.92cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia][more]
XP_022154467.13.5e-1695.92cleavage stimulation factor subunit 77 isoform X2 [Momordica charantia][more]
XP_011653953.17.3e-1487.76cleavage stimulation factor subunit 77 [Cucumis sativus] >KGN55377.2 hypothetica... [more]
XP_038881157.17.3e-1487.76cleavage stimulation factor subunit 77 [Benincasa hispida][more]
XP_008442046.13.6e-1385.71PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q8GUP19.3e-0458.33Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana OX=3702 GN=CSTF77... [more]
Match NameE-valueIdentityDescription
A0A6J1DLS01.7e-1695.92cleavage stimulation factor subunit 77 isoform X2 OS=Momordica charantia OX=3673... [more]
A0A6J1DNS91.7e-1695.92cleavage stimulation factor subunit 77 isoform X1 OS=Momordica charantia OX=3673... [more]
A0A0A0L2S43.5e-1487.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G593920 PE=4 SV=1[more]
A0A1S4DUB41.7e-1385.71cleavage stimulation factor subunit 77 isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3B5G21.7e-1385.71cleavage stimulation factor subunit 77 isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
Match NameE-valueIdentityDescription
AT1G17760.16.6e-0558.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017043.1MS017043.1mRNA