MS016998 (gene) Bitter gourd (TR) v1

Overview
NameMS016998
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold197: 520926 .. 521066 (-)
RNA-Seq ExpressionMS016998
SyntenyMS016998
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTGGAAAGCAAATGTAGTGCCGAAAATAAAGATTGCATGCTGGAAGTTTGTGAACGATATTATTCCTACAAAAACTAATCTTTGCAAGAAAGGACTTTCTACTAACTTGTGTTGTGTTTTTTGTAGGAAGGATGAAGAA

mRNA sequence

TCGTGGAAAGCAAATGTAGTGCCGAAAATAAAGATTGCATGCTGGAAGTTTGTGAACGATATTATTCCTACAAAAACTAATCTTTGCAAGAAAGGACTTTCTACTAACTTGTGTTGTGTTTTTTGTAGGAAGGATGAAGAA

Coding sequence (CDS)

TCGTGGAAAGCAAATGTAGTGCCGAAAATAAAGATTGCATGCTGGAAGTTTGTGAACGATATTATTCCTACAAAAACTAATCTTTGCAAGAAAGGACTTTCTACTAACTTGTGTTGTGTTTTTTGTAGGAAGGATGAAGAA

Protein sequence

SWKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE
Homology
BLAST of MS016998 vs. NCBI nr
Match: XP_021849886.1 (uncharacterized protein LOC110789515 [Spinacia oleracea])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 2   WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDE 47
           WKAN+ PK KI  WK +N+ IPTK NL ++ +  +  CVFC K+E
Sbjct: 212 WKANMFPKWKIFIWKVINNAIPTKQNLRRRHIDVSPACVFCGKEE 256

BLAST of MS016998 vs. NCBI nr
Match: KAB2636102.1 (hypothetical protein D8674_026636 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          W  NV  K+KI  WK   DIIPTK NL KK  +++L C+FC   EE
Sbjct: 16 WATNVPTKVKICAWKIARDIIPTKMNLRKKRANSDLLCLFCGAPEE 61

BLAST of MS016998 vs. NCBI nr
Match: RXH82922.1 (hypothetical protein DVH24_003420 [Malus domestica])

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          WKAN+ PK+K   W   +DI+PTK NL KKG+   + C  C+ +EE
Sbjct: 46 WKANIPPKVKNFTWTACHDILPTKVNLHKKGVGVEVACGVCQGEEE 91

BLAST of MS016998 vs. NCBI nr
Match: KGN63144.1 (hypothetical protein Csa_022313 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          W+  V PK+K++ WK   + +PT +N+ K+G+ TN  C+FCRK  E
Sbjct: 2  WRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVE 47

BLAST of MS016998 vs. NCBI nr
Match: XP_021838610.1 (ABC transporter G family member 39-like [Spinacia oleracea])

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 2   WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFC 43
           WK N+ PK K  CWK ++ I+PTK NL K+G++T+  C FC
Sbjct: 724 WKLNIFPKWKHFCWKIIHRILPTKINLQKRGVTTDDACPFC 764

BLAST of MS016998 vs. ExPASy TrEMBL
Match: A0A5N5IC60 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_026636 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-05
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          W  NV  K+KI  WK   DIIPTK NL KK  +++L C+FC   EE
Sbjct: 16 WATNVPTKVKICAWKIARDIIPTKMNLRKKRANSDLLCLFCGAPEE 61

BLAST of MS016998 vs. ExPASy TrEMBL
Match: A0A498ILS0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003420 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          WKAN+ PK+K   W   +DI+PTK NL KKG+   + C  C+ +EE
Sbjct: 46 WKANIPPKVKNFTWTACHDILPTKVNLHKKGVGVEVACGVCQGEEE 91

BLAST of MS016998 vs. ExPASy TrEMBL
Match: A0A0A0LQ43 (zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-04
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 2  WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
          W+  V PK+K++ WK   + +PT +N+ K+G+ TN  C+FCRK  E
Sbjct: 2  WRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVE 47

BLAST of MS016998 vs. ExPASy TrEMBL
Match: A0A540NSN9 (zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_000397 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-04
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0

Query: 2   WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFCRKDEE 48
           WKA V PK+K+  WK    I+PTK NL KKG+S  + C  C +  E
Sbjct: 93  WKAKVPPKVKVFVWKASQSILPTKVNLAKKGVSLEVRCAMCNEVPE 138

BLAST of MS016998 vs. ExPASy TrEMBL
Match: A0A5E4GGB8 (PREDICTED: reverse mRNAase (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B018728 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-04
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 2   WKANVVPKIKIACWKFVNDIIPTKTNLCKKGLSTNLCCVFC 43
           W ANV  K+KI  W+  +DI+PTK NL KKG+     C+FC
Sbjct: 665 WNANVPTKLKIFAWRVAHDILPTKANLIKKGVDMQDMCMFC 705

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021849886.11.1e-0451.11uncharacterized protein LOC110789515 [Spinacia oleracea][more]
KAB2636102.11.5e-0452.17hypothetical protein D8674_026636 [Pyrus ussuriensis x Pyrus communis][more]
RXH82922.13.3e-0447.83hypothetical protein DVH24_003420 [Malus domestica][more]
KGN63144.14.3e-0443.48hypothetical protein Csa_022313 [Cucumis sativus][more]
XP_021838610.15.6e-0451.22ABC transporter G family member 39-like [Spinacia oleracea][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N5IC607.2e-0552.17Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A498ILS01.6e-0447.83Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_003420 PE=4 SV=1[more]
A0A0A0LQ432.1e-0443.48zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4... [more]
A0A540NSN93.6e-0447.83zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_000397 PE=4... [more]
A0A5E4GGB87.9e-0451.22PREDICTED: reverse mRNAase (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B01872... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..47
e-value: 1.6E-8
score: 35.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016998.1MS016998.1mRNA