MS016993 (gene) Bitter gourd (TR) v1

Overview
NameMS016993
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Locationscaffold197: 411926 .. 412021 (+)
RNA-Seq ExpressionMS016993
SyntenyMS016993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCGGATGATTCTGTACTACAATTCAGCGGAGGAACTTTAGGGCACCCTTGGGGTAATGCACCTTGTGCCTCGATCGGAAAAGAATCAATAGAA

mRNA sequence

TTTTCGGATGATTCTGTACTACAATTCAGCGGAGGAACTTTAGGGCACCCTTGGGGTAATGCACCTTGTGCCTCGATCGGAAAAGAATCAATAGAA

Coding sequence (CDS)

TTTTCGGATGATTCTGTACTACAATTCAGCGGAGGAACTTTAGGGCACCCTTGGGGTAATGCACCTTGTGCCTCGATCGGAAAAGAATCAATAGAA

Protein sequence

FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE
Homology
BLAST of MS016993 vs. NCBI nr
Match: AAA67188.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Crepidomanes minutum])

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAPCA   + ++E
Sbjct: 375 FGDDSVLQFGGGTLGHPWGNAPCAVANRVALE 406

BLAST of MS016993 vs. NCBI nr
Match: RYR38853.1 (hypothetical protein Ahy_A09g044116 [Arachis hypogaea])

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAPC+   + ++E
Sbjct: 142 FGDDSVLQFGGGTLGHPWGNAPCSVANRVALE 173

BLAST of MS016993 vs. NCBI nr
Match: AAA84329.2 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Illicium parviflorum])

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A   +E++E
Sbjct: 384 FGDDSVLQFGGGTLGHPWGNAPGAVANREALE 415

BLAST of MS016993 vs. NCBI nr
Match: YP_009772868.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Avicennia marina] >QGX43549.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Avicennia marina] >QIZ11437.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Avicennia marina])

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + S+E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAAANRVSLE 425

BLAST of MS016993 vs. NCBI nr
Match: AAW23013.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Trilophozia quinquedentata])

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPAAAANRVALE 425

BLAST of MS016993 vs. ExPASy Swiss-Prot
Match: P31183 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laevigatus OX=4312 GN=rbcL PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGT+GHPWGNAP A  G+ ++E
Sbjct: 394 FGDDSVLQFGGGTIGHPWGNAPGAVAGRVALE 425

BLAST of MS016993 vs. ExPASy Swiss-Prot
Match: P24671 (Ribulose bisphosphate carboxylase large chain OS=Abies magnifica OX=3320 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 425

BLAST of MS016993 vs. ExPASy Swiss-Prot
Match: P25413 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aegilops crassa OX=4481 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 339 FGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 370

BLAST of MS016993 vs. ExPASy Swiss-Prot
Match: A1EA16 (Ribulose bisphosphate carboxylase large chain OS=Agrostis stolonifera OX=63632 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 425

BLAST of MS016993 vs. ExPASy Swiss-Prot
Match: P48684 (Ribulose bisphosphate carboxylase large chain OS=Avena sativa OX=4498 GN=rbcL PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 425

BLAST of MS016993 vs. ExPASy TrEMBL
Match: Q37331 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crepidomanes minutum OX=32127 GN=rbcL PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAPCA   + ++E
Sbjct: 375 FGDDSVLQFGGGTLGHPWGNAPCAVANRVALE 406

BLAST of MS016993 vs. ExPASy TrEMBL
Match: A0A445BJK2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g044116 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAPC+   + ++E
Sbjct: 142 FGDDSVLQFGGGTLGHPWGNAPCSVANRVALE 173

BLAST of MS016993 vs. ExPASy TrEMBL
Match: Q32468 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Illicium parviflorum OX=13099 GN=rbcL PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A   +E++E
Sbjct: 384 FGDDSVLQFGGGTLGHPWGNAPGAVANREALE 415

BLAST of MS016993 vs. ExPASy TrEMBL
Match: A0A6B9DD99 (Ribulose bisphosphate carboxylase large chain OS=Avicennia marina OX=82927 GN=rbcL PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-05
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + S+E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAAANRVSLE 425

BLAST of MS016993 vs. ExPASy TrEMBL
Match: Q49M32 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Trilophozia quinquedentata OX=248352 GN=rbcL PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A+  + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPAAAANRVALE 425

BLAST of MS016993 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-08
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0

Query: 1   FSDDSVLQFSGGTLGHPWGNAPCASIGKESIE 33
           F DDSVLQF GGTLGHPWGNAP A   + ++E
Sbjct: 394 FGDDSVLQFGGGTLGHPWGNAPGAVANRVALE 425

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AAA67188.11.6e-0571.88ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Crepidom... [more]
RYR38853.13.5e-0568.75hypothetical protein Ahy_A09g044116 [Arachis hypogaea][more]
AAA84329.25.9e-0571.88ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Illicium... [more]
YP_009772868.17.7e-0571.88ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Avicennia marina]... [more]
AAW23013.17.7e-0568.75ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Trilopho... [more]
Match NameE-valueIdentityDescription
P311831.7e-0768.75Ribulose bisphosphate carboxylase large chain (Fragment) OS=Corynocarpus laeviga... [more]
P246712.3e-0768.75Ribulose bisphosphate carboxylase large chain OS=Abies magnifica OX=3320 GN=rbcL... [more]
P254132.3e-0768.75Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aegilops crassa OX=4... [more]
A1EA162.3e-0768.75Ribulose bisphosphate carboxylase large chain OS=Agrostis stolonifera OX=63632 G... [more]
P486842.3e-0768.75Ribulose bisphosphate carboxylase large chain OS=Avena sativa OX=4498 GN=rbcL PE... [more]
Match NameE-valueIdentityDescription
Q373317.5e-0671.88Ribulose bisphosphate carboxylase large chain (Fragment) OS=Crepidomanes minutum... [more]
A0A445BJK21.7e-0568.75Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g044116 PE=4 SV=1[more]
Q324682.9e-0571.88Ribulose bisphosphate carboxylase large chain (Fragment) OS=Illicium parviflorum... [more]
A0A6B9DD993.7e-0571.88Ribulose bisphosphate carboxylase large chain OS=Avicennia marina OX=82927 GN=rb... [more]
Q49M323.7e-0568.75Ribulose bisphosphate carboxylase large chain (Fragment) OS=Trilophozia quinqued... [more]
Match NameE-valueIdentityDescription
ATCG00490.13.6e-0868.75ribulose-bisphosphate carboxylases [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 3..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016993.1MS016993.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000287 magnesium ion binding