MS016973 (gene) Bitter gourd (TR) v1

Overview
NameMS016973
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (Reversetranscriptase)-related family protein
Locationscaffold197: 135217 .. 135402 (-)
RNA-Seq ExpressionMS016973
SyntenyMS016973
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAAACTAAAAATCCAGTCCAAAATTAAGAACTTTATTTGGAGGATTTTTAGTGACTGTATTCCCTTTATGGGGAACTTACTGAAGAAAGGGCTGGACGTGTATTCGAAGTGTCAGGTTTGTGGAAAGCAGGTTGAAACAACATATCATGTTCTTTTCAAATGTAAAAGAGCGAGAGAAGTGTGG

mRNA sequence

TGGAAACTAAAAATCCAGTCCAAAATTAAGAACTTTATTTGGAGGATTTTTAGTGACTGTATTCCCTTTATGGGGAACTTACTGAAGAAAGGGCTGGACGTGTATTCGAAGTGTCAGGTTTGTGGAAAGCAGGTTGAAACAACATATCATGTTCTTTTCAAATGTAAAAGAGCGAGAGAAGTGTGG

Coding sequence (CDS)

TGGAAACTAAAAATCCAGTCCAAAATTAAGAACTTTATTTGGAGGATTTTTAGTGACTGTATTCCCTTTATGGGGAACTTACTGAAGAAAGGGCTGGACGTGTATTCGAAGTGTCAGGTTTGTGGAAAGCAGGTTGAAACAACATATCATGTTCTTTTCAAATGTAAAAGAGCGAGAGAAGTGTGG

Protein sequence

WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW
Homology
BLAST of MS016973 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 12 FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW 63
          F+WR+F+DC+P M NL+K+G+D    C VCGKQ+ETT H LFKCKRA+EVW
Sbjct: 2  FLWRVFNDCVPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW 52

BLAST of MS016973 vs. NCBI nr
Match: GER49483.1 (RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Striga asiatica])

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           W L+++ KIK+FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  
Sbjct: 135 WNLRVKGKIKHFIWRCFTDCLPVSANLRIRGMQLDNVCQCCGESVETVGHVMFTCSRAAM 194

Query: 61  VW 63
           VW
Sbjct: 195 VW 196

BLAST of MS016973 vs. NCBI nr
Match: GER28724.1 (RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Striga asiatica])

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           W L+++ KI++FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  
Sbjct: 222 WNLRVKGKIQHFIWRCFTDCLPVSANLRIRGMQLDNVCQCCGESVETVEHVMFTCSRAAM 281

Query: 61  VW 63
           VW
Sbjct: 282 VW 283

BLAST of MS016973 vs. NCBI nr
Match: XP_033139897.1 (uncharacterized protein LOC117131724 [Brassica rapa])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           WKLKI  K++ F W++  + +P   NL K+G+  YS CQVCG+++ET +H+L +C+ ARE
Sbjct: 181 WKLKIPPKLRLFWWKVLHNGLPVADNLNKRGIRNYSLCQVCGEELETVHHMLLECRVARE 240

Query: 61  VW 63
           +W
Sbjct: 241 IW 242

BLAST of MS016973 vs. NCBI nr
Match: GER31074.1 (RNA-directed DNA polymerase-like protein [Striga asiatica])

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1    WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
            W LK+  K+K+FIW+ F++ +P   NL K+G++V + C++CG+  ET  HVLF C+RA+ 
Sbjct: 1471 WSLKVMGKVKHFIWKCFTNILPVSTNLEKRGMEVDTVCRICGEGKETQEHVLFLCRRAKL 1530

Query: 61   VW 63
            +W
Sbjct: 1531 IW 1532

BLAST of MS016973 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-14
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 12 FIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRAREVW 63
          F+WR+F+DC+P M NL+K+G+D    C VCGKQ+ETT H LFKCKRA+EVW
Sbjct: 2  FLWRVFNDCVPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVW 52

BLAST of MS016973 vs. ExPASy TrEMBL
Match: A0A5A7QVV0 (RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Striga asiatica OX=4170 GN=STAS_26733 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           W L+++ KIK+FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  
Sbjct: 135 WNLRVKGKIKHFIWRCFTDCLPVSANLRIRGMQLDNVCQCCGESVETVGHVMFTCSRAAM 194

Query: 61  VW 63
           VW
Sbjct: 195 VW 196

BLAST of MS016973 vs. ExPASy TrEMBL
Match: A0A5A7P850 (RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Striga asiatica OX=4170 GN=STAS_04536 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           W L+++ KI++FIWR F+DC+P   NL  +G+ + + CQ CG+ VET  HV+F C RA  
Sbjct: 222 WNLRVKGKIQHFIWRCFTDCLPVSANLRIRGMQLDNVCQCCGESVETVEHVMFTCSRAAM 281

Query: 61  VW 63
           VW
Sbjct: 282 VW 283

BLAST of MS016973 vs. ExPASy TrEMBL
Match: A0A5A7PEH8 (RNA-directed DNA polymerase-like protein OS=Striga asiatica OX=4170 GN=STAS_07050 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.8e-11
Identity = 28/62 (45.16%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1    WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
            W LK+  K+K+FIW+ F++ +P   NL K+G++V + C++CG+  ET  HVLF C+RA+ 
Sbjct: 1471 WSLKVMGKVKHFIWKCFTNILPVSTNLEKRGMEVDTVCRICGEGKETQEHVLFLCRRAKL 1530

Query: 61   VW 63
            +W
Sbjct: 1531 IW 1532

BLAST of MS016973 vs. ExPASy TrEMBL
Match: A0A5A7PA33 (RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Striga asiatica OX=4170 GN=STAS_05256 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1   WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
           W L+++ KIK+FIWR F+D +P   NL  +G+ + + CQ CG+ VET  H++F C RA  
Sbjct: 243 WNLRVKGKIKHFIWRCFTDVLPVNDNLRLRGMQLDTVCQCCGESVETVEHLMFTCSRAAM 302

Query: 61  VW 63
           VW
Sbjct: 303 VW 304

BLAST of MS016973 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 1  WKLKIQSKIKNFIWRIFSDCIPFMGNLLKKGLDVYSKCQVCGKQVETTYHVLFKCKRARE 60
          WKLK   KIK+F+W++ S  +    NL ++ +  + +C  C ++ ET+ H+ F C  A++
Sbjct: 19 WKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQ 78

Query: 61 VW 63
          VW
Sbjct: 79 VW 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145060.11.8e-1364.71uncharacterized protein LOC111014578 [Momordica charantia][more]
GER49483.19.7e-1250.00RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Strig... [more]
GER28724.12.2e-1148.39RNA-directed DNA polymerase (reversetranscriptase)-related family protein [Strig... [more]
XP_033139897.11.8e-1046.77uncharacterized protein LOC117131724 [Brassica rapa][more]
GER31074.11.8e-1045.16RNA-directed DNA polymerase-like protein [Striga asiatica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTE38.5e-1464.71uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5A7QVV04.7e-1250.00RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Str... [more]
A0A5A7P8501.0e-1148.39RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Str... [more]
A0A5A7PEH88.8e-1145.16RNA-directed DNA polymerase-like protein OS=Striga asiatica OX=4170 GN=STAS_0705... [more]
A0A5A7PA331.5e-1046.77RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Str... [more]
Match NameE-valueIdentityDescription
AT3G25270.11.4e-0835.48Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 1..62
e-value: 6.8E-17
score: 61.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016973.1MS016973.1mRNA