MS016949 (gene) Bitter gourd (TR) v1

Overview


Name	MS016949
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF3245)
Location	scaffold976: 158773 .. 159030 (+)
RNA-Seq Expression	MS016949
Synteny	MS016949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTTGGACTTGGAGCCAAAGTATCACGCCAATTCAGAAGTGGACCTTCTAATGACCCGCTTGACAGAAAATTATATGCCAAATTTGATGCTGGGAAAAGGCAAGCTGCTAGAAAGACAAAGGAGGATACCCCGATACTCAACAATGAAGATGACGAGGATGATGATGAAGAAGAGAGTAGAACTGCCATGTTCGATAAGAAGCGGGCAGCAACTCCGGTAGCTATGCCTCCTTTTCGGTCCAAGAAAAAACAGAGG

mRNA sequence

AGACTTGGACTTGGAGCCAAAGTATCACGCCAATTCAGAAGTGGACCTTCTAATGACCCGCTTGACAGAAAATTATATGCCAAATTTGATGCTGGGAAAAGGCAAGCTGCTAGAAAGACAAAGGAGGATACCCCGATACTCAACAATGAAGATGACGAGGATGATGATGAAGAAGAGAGTAGAACTGCCATGTTCGATAAGAAGCGGGCAGCAACTCCGGTAGCTATGCCTCCTTTTCGGTCCAAGAAAAAACAGAGG

Coding sequence (CDS)

AGACTTGGACTTGGAGCCAAAGTATCACGCCAATTCAGAAGTGGACCTTCTAATGACCCGCTTGACAGAAAATTATATGCCAAATTTGATGCTGGGAAAAGGCAAGCTGCTAGAAAGACAAAGGAGGATACCCCGATACTCAACAATGAAGATGACGAGGATGATGATGAAGAAGAGAGTAGAACTGCCATGTTCGATAAGAAGCGGGCAGCAACTCCGGTAGCTATGCCTCCTTTTCGGTCCAAGAAAAAACAGAGG

Protein sequence

RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEESRTAMFDKKRAATPVAMPPFRSKKKQR

Homology

[Close]

BLAST of MS016949 vs. NCBI nr
Match: XP_022157679.1 (uncharacterized protein LOC111024338 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEES 60
           RLGLGAKVSRQFRSGPSNDPLDRKLYAK DAGKRQAARKTKEDT ILNNEDDEDDDEEES
Sbjct: 51  RLGLGAKVSRQFRSGPSNDPLDRKLYAKLDAGKRQAARKTKEDTLILNNEDDEDDDEEES 110

Query: 61  RTAMFDKKRAATPVAMPPFRSKKKQR 87
           RTAMFDKKRAATPVAMPPFRSKKKQR
Sbjct: 111 RTAMFDKKRAATPVAMPPFRSKKKQR 136

[Close]

BLAST of MS016949 vs. NCBI nr
Match: XP_023514247.1 (uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514248.1 uncharacterized protein LOC111778569 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-28
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEE 60
           RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP+LNNEDD+D DDEEE
Sbjct: 58  RLGLGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTPVLNNEDDDDNDDEEE 117

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           S+TAMFDKKRA T V MPPF +KKK+R
Sbjct: 118 SKTAMFDKKRAPTRVTMPPFWTKKKRR 144

[Close]

BLAST of MS016949 vs. NCBI nr
Match: XP_023000602.1 (uncharacterized protein LOC111494843 [Cucurbita maxima] >XP_023000603.1 uncharacterized protein LOC111494843 [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 3.0e-27
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEE 60
           RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDT +LNNEDD+D DDEEE
Sbjct: 58  RLGLGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTRVLNNEDDDDNDDEEE 117

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           S+TAMFDKKRA T V MPPF +KKK+R
Sbjct: 118 SKTAMFDKKRAPTRVTMPPFWTKKKRR 144

[Close]

BLAST of MS016949 vs. NCBI nr
Match: XP_008458228.1 (PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEE 60
           RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEE
Sbjct: 54  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEE 113

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           SRTA+F+KKRAA PV MPPF+ KKK+R
Sbjct: 114 SRTAIFNKKRAAKPVTMPPFQGKKKRR 140

[Close]

BLAST of MS016949 vs. NCBI nr
Match: XP_022964046.1 (uncharacterized protein LOC111464189 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEE 60
           RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP++NNEDD+D DDEEE
Sbjct: 58  RLGLGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTPVVNNEDDDDNDDEEE 117

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           S TAMFDKKRA T V MPP  +KKK+R
Sbjct: 118 SETAMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of MS016949 vs. ExPASy TrEMBL
Match: A0A6J1DX89 (uncharacterized protein LOC111024338 OS=Momordica charantia OX=3673 GN=LOC111024338 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDEDDDEEES 60
           RLGLGAKVSRQFRSGPSNDPLDRKLYAK DAGKRQAARKTKEDT ILNNEDDEDDDEEES
Sbjct: 51  RLGLGAKVSRQFRSGPSNDPLDRKLYAKLDAGKRQAARKTKEDTLILNNEDDEDDDEEES 110

Query: 61  RTAMFDKKRAATPVAMPPFRSKKKQR 87
           RTAMFDKKRAATPVAMPPFRSKKKQR
Sbjct: 111 RTAMFDKKRAATPVAMPPFRSKKKQR 136

[Close]

BLAST of MS016949 vs. ExPASy TrEMBL
Match: A0A6J1KE33 (uncharacterized protein LOC111494843 OS=Cucurbita maxima OX=3661 GN=LOC111494843 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEE 60
           RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDT +LNNEDD+D DDEEE
Sbjct: 58  RLGLGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTRVLNNEDDDDNDDEEE 117

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           S+TAMFDKKRA T V MPPF +KKK+R
Sbjct: 118 SKTAMFDKKRAPTRVTMPPFWTKKKRR 144

[Close]

BLAST of MS016949 vs. ExPASy TrEMBL
Match: A0A5D3BV19 (Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001090 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEE 60
           RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEE
Sbjct: 92  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEE 151

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           SRTA+F+KKRAA PV MPPF+ KKK+R
Sbjct: 152 SRTAIFNKKRAAKPVTMPPFQGKKKRR 178

[Close]

BLAST of MS016949 vs. ExPASy TrEMBL
Match: A0A6J1HHS0 (uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC111464189 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDED-DDEEE 60
           RLGLGAK+S QFR+GPSNDPLDRKLYAK DAGK+QAARK  EDTP++NNEDD+D DDEEE
Sbjct: 58  RLGLGAKISSQFRNGPSNDPLDRKLYAKLDAGKKQAARKMLEDTPVVNNEDDDDNDDEEE 117

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           S TAMFDKKRA T V MPP  +KKK+R
Sbjct: 118 SETAMFDKKRAPTRVTMPPLWTKKKRR 144

[Close]

BLAST of MS016949 vs. ExPASy TrEMBL
Match: A0A1S3C7D1 (uncharacterized protein LOC103497715 OS=Cucumis melo OX=3656 GN=LOC103497715 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 66/87 (75.86%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNNEDDE-DDDEEE 60
           RLGLGAKV+R FR+GPSNDPLDRKLYAK DAGK+QAARK  E+TP+L+N+DD+ DD+EEE
Sbjct: 54  RLGLGAKVTRHFRNGPSNDPLDRKLYAKLDAGKKQAARKMSEETPVLDNKDDDGDDEEEE 113

Query: 61  SRTAMFDKKRAATPVAMPPFRSKKKQR 87
           SRTA+F+KKRAA PV MPPF+ KKK+R
Sbjct: 114 SRTAIFNKKRAAKPVTMPPFQGKKKRR 140

[Close]

BLAST of MS016949 vs. TAIR 10
Match: AT3G61370.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEE 60
           RLGLGA+VSRQ +  PS+DPLD+KL AKF A KR+ AR   E      N  +D EDDDE 
Sbjct: 50  RLGLGAQVSRQTKRRPSDDPLDQKLEAKFAAVKRKNARLVAEAAGSSKNAGDDSEDDDES 109

Query: 61  ESRTAMFDKKRAAT 73
           ES++  F KK+  T
Sbjct: 110 ESKSQAFGKKKKNT 123

[Close]

BLAST of MS016949 vs. TAIR 10
Match: AT4G07940.1 (Protein of unknown function (DUF3245) )

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-11
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1   RLGLGAKVSRQFRSGPSNDPLDRKLYAKFDAGKRQAARKTKEDTPILNN--EDDEDDDEE 60
           +LGLGA+VSRQ +  PS+DPLD+KL AKF AGKR+ AR   E      N  +D+ED DE 
Sbjct: 62  KLGLGAQVSRQKKRRPSDDPLDQKLEAKFAAGKRKNARLVAESAGSSKNAGDDNEDGDES 121

Query: 61  ESRTAMF--DKKRAATP 74
           ES++  F   KK  +TP
Sbjct: 122 ESKSQAFGMKKKNTSTP 138

The following BLAST results are available for this feature:

BLAST of MS016949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157679.1	3.5e-36	97.67	uncharacterized protein LOC111024338 [Momordica charantia]	[more]
XP_023514247.1	2.7e-28	80.46	uncharacterized protein LOC111778569 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023000602.1	3.0e-27	79.31	uncharacterized protein LOC111494843 [Cucurbita maxima] >XP_023000603.1 uncharac...	[more]
XP_008458228.1	5.1e-27	75.86	PREDICTED: uncharacterized protein LOC103497715 [Cucumis melo]	[more]
XP_022964046.1	5.1e-27	78.16	uncharacterized protein LOC111464189 [Cucurbita moschata]	[more]

BLAST of MS016949 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX89	1.7e-36	97.67	uncharacterized protein LOC111024338 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1KE33	1.4e-27	79.31	uncharacterized protein LOC111494843 OS=Cucurbita maxima OX=3661 GN=LOC111494843...	[more]
A0A5D3BV19	2.5e-27	75.86	Putative RNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1HHS0	2.5e-27	78.16	uncharacterized protein LOC111464189 OS=Cucurbita moschata OX=3662 GN=LOC1114641...	[more]
A0A1S3C7D1	2.5e-27	75.86	uncharacterized protein LOC103497715 OS=Cucumis melo OX=3656 GN=LOC103497715 PE=...	[more]

BLAST of MS016949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61370.1	3.2e-11	54.05	Protein of unknown function (DUF3245)	[more]
AT4G07940.1	7.1e-11	51.95	Protein of unknown function (DUF3245)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021641	Protein of unknown function DUF3245	PFAM	PF11595	DUF3245	coord: 1..84 e-value: 1.8E-9 score: 38.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	PANTHER	PTHR35741	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 1..86
None	No IPR available	PANTHER	PTHR35741:SF1	FACTOR CWC22-LIKE PROTEIN, PUTATIVE (DUF3245)-RELATED	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016949.1	MS016949.1	mRNA