MS016933 (gene) Bitter gourd (TR) v1

Overview
NameMS016933
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Locationscaffold976: 6863 .. 7093 (+)
RNA-Seq ExpressionMS016933
SyntenyMS016933
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGGTGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAAGAATTGATTGAAACTTTAGCATGGGCTCACGAACGCACACCTTTGGCT

mRNA sequence

TCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGGTGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAAGAATTGATTGAAACTTTAGCATGGGCTCACGAACGCACACCTTTGGCT

Coding sequence (CDS)

TCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCTTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGGTGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAAGAATTGATTGAAACTTTAGCATGGGCTCACGAACGCACACCTTTGGCT

Protein sequence

SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLA
Homology
BLAST of MS016933 vs. NCBI nr
Match: YP_009776565.1 (photosystem I P700 apoprotein A2 [Phyllanthus amarus] >QJA27051.1 photosystem I P700 apoprotein A2 [Phyllanthus amarus])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. NCBI nr
Match: QBA68155.1 (photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium dasytrichum])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. NCBI nr
Match: YP_009662617.1 (photosystem I P700 apoprotein A2 [Amphilophium dolichoides] >YP_009662714.1 photosystem I P700 apoprotein A2 [Amphilophium carolinae] >QBA68153.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium crucigerum] >QBA68150.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium carolinae] >QBA68156.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium dolichoides] >QCU48139.1 photosystem I P700 apoprotein A2 [Amphilophium dolichoides] >QCU48236.1 photosystem I P700 apoprotein A2 [Amphilophium carolinae])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. NCBI nr
Match: YP_009662530.1 (photosystem I P700 apoprotein A2 [Amphilophium lactiflorum] >QBA68164.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium lactiflorum] >QCU48052.1 photosystem I P700 apoprotein A2 [Amphilophium lactiflorum])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. NCBI nr
Match: YP_009661179.1 (photosystem I P700 apoprotein A2 [Amphilophium chocoense] >YP_009661266.1 photosystem I P700 apoprotein A2 [Amphilophium cuneifolium] >QBA68144.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium arenarium] >QBA68152.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium cremersii] >QBA68159.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium elongatum] >QBA68151.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium chocoense] >QBA68154.1 photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium cuneifolium])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy Swiss-Prot
Match: Q85FM0 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Adiantum capillus-veneris OX=13818 GN=psaB PE=2 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy Swiss-Prot
Match: A4QJB4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=434059 GN=psaB PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy Swiss-Prot
Match: A4QJJ8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=72657 GN=psaB PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy TrEMBL
Match: A0A411EH35 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium ecuadorense OX=2358314 GN=psaB PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy TrEMBL
Match: A0A411EGX5 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium dusenianum OX=2358313 GN=psaB PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy TrEMBL
Match: A0A411EH45 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium paniculatum OX=353927 GN=psaB PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy TrEMBL
Match: A0A411EGX9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium chocoense OX=2358323 GN=psaB PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. ExPASy TrEMBL
Match: A0A411EH24 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium pilosum OX=2358320 GN=psaB PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 169.9 bits (429), Expect = 8.2e-43
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAW+FLFGHLVWATGFMFLISWRGYW
Sbjct: 612 SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYW 671

Query: 61  QELIETLAWAHERTPLA 78
           QELIETLAWAHERTPLA
Sbjct: 672 QELIETLAWAHERTPLA 688

BLAST of MS016933 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-16
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1   SSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWVFLFGHLVWATGFMFLISWRGYW 60
           SS  + GWLRD+LW  +SQ+I  Y     +SLS +   FL  H VWA   MFL S RGYW
Sbjct: 637 SSITINGWLRDFLWAQASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYW 696

Query: 61  QELIETLAWAHERTPLA 78
           QELIE++ WAH +  +A
Sbjct: 697 QELIESIVWAHNKLKVA 709

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009776565.14.0e-39100.00photosystem I P700 apoprotein A2 [Phyllanthus amarus] >QJA27051.1 photosystem I ... [more]
QBA68155.14.0e-39100.00photosystem I P700 chlorophyll a apoprotein A2 [Amphilophium dasytrichum][more]
YP_009662617.14.0e-39100.00photosystem I P700 apoprotein A2 [Amphilophium dolichoides] >YP_009662714.1 phot... [more]
YP_009662530.14.0e-39100.00photosystem I P700 apoprotein A2 [Amphilophium lactiflorum] >QBA68164.1 photosys... [more]
YP_009661179.14.0e-39100.00photosystem I P700 apoprotein A2 [Amphilophium chocoense] >YP_009661266.1 photos... [more]
Match NameE-valueIdentityDescription
Q85FM01.2e-4198.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Adiantum capillus-veneris OX=1... [more]
A4QJB41.2e-4198.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=4340... [more]
A4QJJ81.2e-4198.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=726... [more]
A1EA071.2e-4198.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ... [more]
Q333321.2e-4198.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p... [more]
Match NameE-valueIdentityDescription
A0A411EH351.9e-39100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium ecuadorense OX=23... [more]
A0A411EGX51.9e-39100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium dusenianum OX=235... [more]
A0A411EH451.9e-39100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium paniculatum OX=35... [more]
A0A411EGX91.9e-39100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium chocoense OX=2358... [more]
A0A411EH241.9e-39100.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Amphilophium pilosum OX=235832... [more]
Match NameE-valueIdentityDescription
ATCG00340.18.2e-4398.70Photosystem I, PsaA/PsaB protein [more]
ATCG00350.12.9e-1650.65Photosystem I, PsaA/PsaB protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 1..77
e-value: 3.0E-37
score: 128.2
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 1..77
e-value: 4.0E-42
score: 146.2
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 1..77
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 5..77
NoneNo IPR availablePANTHERPTHR33078:SF57PHOTOSYSTEM II REACTION CENTER PROTEIN Hcoord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016933.1MS016933.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid