MS016892 (gene) Bitter gourd (TR) v1

Overview


Name	MS016892
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gibberellin-regulated protein 2
Location	scaffold9_1: 859898 .. 860080 (-)
RNA-Seq Expression	MS016892
Synteny	MS016892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGACTGCGGCGGCGCGTGCGCGGGGAGGTGCCGGCTGTCGTCGAGGCCGCGGCTGTGCAATAGGGCGTGCGGGACGTGCTGTCAGCGCTGCAACTGCGTTCCGCCGGGAACCTCCGGAAACCACCACCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCCCAAATGCCCC

mRNA sequence

TTAGACTGCGGCGGCGCGTGCGCGGGGAGGTGCCGGCTGTCGTCGAGGCCGCGGCTGTGCAATAGGGCGTGCGGGACGTGCTGTCAGCGCTGCAACTGCGTTCCGCCGGGAACCTCCGGAAACCACCACCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCCCAAATGCCCC

Coding sequence (CDS)

TTAGACTGCGGCGGCGCGTGCGCGGGGAGGTGCCGGCTGTCGTCGAGGCCGCGGCTGTGCAATAGGGCGTGCGGGACGTGCTGTCAGCGCTGCAACTGCGTTCCGCCGGGAACCTCCGGAAACCACCACCTCTGCCCTTGCTACGCCGCCATGACCACCCACGGCGGCCGCCCCAAATGCCCC

Protein sequence

LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKCP

Homology

[Close]

BLAST of MS016892 vs. NCBI nr
Match: XP_022144284.1 (snakin-2-like [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
           +DCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC
Sbjct: 49  MDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 108

Query: 61  P 62
           P
Sbjct: 109 P 109

[Close]

BLAST of MS016892 vs. NCBI nr
Match: XP_038886089.1 (snakin-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 7.2e-28
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACAGRCRLSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 37 MDCGGACAGRCRLSSRQRLCNRACGTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. NCBI nr
Match: XP_038886088.1 (snakin-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 7.2e-28
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACAGRCRLSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 39 MDCGGACAGRCRLSSRQRLCNRACGTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of MS016892 vs. NCBI nr
Match: XP_023002563.1 (snakin-2-like [Cucurbita maxima])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGR KC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. NCBI nr
Match: XP_022951559.1 (snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020456.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 4.7e-27
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGR KC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-26
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
           +DCGGACA RCRLSSRPRLCNRACGTCC RCNCVPPGTSGN   CPCYA++TTHG + KC
Sbjct: 44  IDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKC 103

Query: 61  P 62
           P
Sbjct: 104 P 104

[Close]

BLAST of MS016892 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-24
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGR KC
Sbjct: 39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of MS016892 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-24
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 97

Query: 61 P 62
          P
Sbjct: 98 P 98

[Close]

BLAST of MS016892 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 9.5e-23
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGR KC
Sbjct: 39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of MS016892 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KC
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKC 93

Query: 61 P 62
          P
Sbjct: 94 P 94

[Close]

BLAST of MS016892 vs. ExPASy TrEMBL
Match: A0A6J1CRW3 (snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.9e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
           +DCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC
Sbjct: 49  MDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 108

Query: 61  P 62
           P
Sbjct: 109 P 109

[Close]

BLAST of MS016892 vs. ExPASy TrEMBL
Match: A0A6J1KTY1 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGR KC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. ExPASy TrEMBL
Match: A0A6J1GJ50 (snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGR KC
Sbjct: 37 MDCGGACAARCRLSSRPRLCHRACGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. ExPASy TrEMBL
Match: A0A0A0LNS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 37 MDCRGACTRRCTLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. ExPASy TrEMBL
Match: A0A1S3BBY7 (snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGR KC
Sbjct: 37 MDCRGACTRRCSLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-25
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGR KC
Sbjct: 39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of MS016892 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-25
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 97

Query: 61 P 62
          P
Sbjct: 98 P 98

[Close]

BLAST of MS016892 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-25
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KC
Sbjct: 37 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKC 96

Query: 61 P 62
          P
Sbjct: 97 P 97

[Close]

BLAST of MS016892 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 106.7 bits (265), Expect = 6.8e-24
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGR KC
Sbjct: 39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query: 61 P 62
          P
Sbjct: 99 P 99

[Close]

BLAST of MS016892 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-23
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  LDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKC 60
          +DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KC
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKC 93

Query: 61 P 62
          P
Sbjct: 94 P 94

The following BLAST results are available for this feature:

BLAST of MS016892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144284.1	2.0e-30	98.36	snakin-2-like [Momordica charantia]	[more]
XP_038886089.1	7.2e-28	93.44	snakin-2-like isoform X2 [Benincasa hispida]	[more]
XP_038886088.1	7.2e-28	93.44	snakin-2-like isoform X1 [Benincasa hispida]	[more]
XP_023002563.1	2.8e-27	90.16	snakin-2-like [Cucurbita maxima]	[more]
XP_022951559.1	4.7e-27	88.52	snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita ar...	[more]

BLAST of MS016892 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	1.9e-26	81.97	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46687	5.1e-24	75.41	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
P46689	8.6e-24	75.41	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
P46688	9.5e-23	73.77	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
F4IQJ4	1.1e-21	70.49	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]

BLAST of MS016892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRW3	9.9e-31	98.36	snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1	[more]
A0A6J1KTY1	1.3e-27	90.16	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1	[more]
A0A6J1GJ50	2.3e-27	88.52	snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1	[more]
A0A0A0LNS5	1.5e-26	90.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1	[more]
A0A1S3BBY7	1.5e-26	90.16	snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1	[more]

BLAST of MS016892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09600.1	3.6e-25	75.41	GAST1 protein homolog 3	[more]
AT1G75750.1	6.1e-25	75.41	GAST1 protein homolog 1	[more]
AT1G75750.2	6.1e-25	75.41	GAST1 protein homolog 1	[more]
AT4G09610.1	6.8e-24	73.77	GAST1 protein homolog 2	[more]
AT2G18420.1	7.5e-23	70.49	Gibberellin-regulated family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 2..61 e-value: 5.3E-23 score: 80.9
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..61
None	No IPR available	PANTHER	PTHR23201:SF104	GIBBERELLIN-REGULATED PROTEIN 1	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016892.1	MS016892.1	mRNA