MS016863 (gene) Bitter gourd (TR) v1

Overview


Name	MS016863
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription initiation factor IIF subunit beta
Location	scaffold9_1: 577380 .. 585678 (-)
RNA-Seq Expression	MS016863
Synteny	MS016863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGAGCACGGCGGCGGCGGCAGTAGCAGTAACTTGGATACAGGGAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCCTTGCTGGTCGCGAAGTCATGGCAGTCTCACCCTCCCTCTGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTCCAATCCGACGAGTCCTCTTCTCTCCAGGTACTTTTAGGACCTGTAATTGATGTTCACGTGGTGTACTATTACTGATTAAACTCTTTCTGCGTTTTTCCGAGTAATCTCAGCTTGTTTTTTGGCTTCCAGTGTTGTAGATTGATGTTGTTCTGGTTTCCTGATTGTTAATTTGATCGATGCTTGAGTGTGGTTGCAGAACCCTAGATTTTCTTTCACTGTAATTTTGACCCCTGAGGTCTGAGAGGTAGCTTGCTTCTCTCCTTATCCATGTTGCTAAAGGGAATATAAGCATTTACTTCAATAATTGACACTATGATACTCGTTGCCAAGTTTGTCCTAGAGAAGGGAAGTGCCGTTACTTTGTTTGTCGTAAGTACTGAGCCCTGGCCTCTAATGCGCAAGAAGATTTAAGTAGTCTTTTGGACTGTTTGCTATGAAGCTTAAATACTTTTTAAAGGTTGCAAAGATATTGGATGAGGTCTCCATTGGTGTGTGCCGTGAAATGAAACCTTGTCTATGGATTTGGTTAAGGCCCCTCCTCTCCTTGATGCTTTCACTTGAAATTACATTTGGAAGGTTGAGTGCCCTAAAAGAGCTAAAATCTTCACTTGGGAGCTCATTCACGGTGGTATCAACATTCAAGTTACATATTCTCACTCTATCTCCAAGCTGGTGCTAGTGCATTATGTGCAAGGAAAGTGAAGTGAACAAAGACCAGTCCACCTTTTTCTGTGTTGAAAAACAAGTTCCGAGTTTTTGTATGTATTACATTTTATCAGCATCTCTCTCTCTTTCTCTCTCTCTATCGGTCTATTTTTTATTACTATAATAAACCTAACTTTACATTGATGATATGAAAATACTTGGGAGGTTACAAAAAGGATCTTGAATTGATTTTAATAACATAAGAGAGTGGAAATGGTATACCATTGAAGTGTTAAAATAAGTCATCTCCCATCTTGGGGGGTTGTTTTTTTTTTGTCTTCCCCTTGTATTTTTTCATTTTTTCTCATGAAAGTTTGGTTTCTCATAAAAGAAAACTAAGCTATCTCCCATCTTTCTTCCTCCCGGGAAAAATCTTTGAAGTTATTTCTTTCCATATTGACCAGAGAGTGCTCTTAACTCCTATCACCCATATAGCACGAGCTTTTGGATTTGAAAAGAGGCCACATAAAAGATGAAGTAAACAGTCTTTAATTTTATTGTGGAGACACCACACCAAGTAAGTTTAAATTCGTTTAATAAGTGGATCCAAATATATTTCTCATTCCAGTGGTGTTGGAAGAACATAGTCTTTTTGGACATTGGACCAATCAACTTATCATTACTTGGTTGGATGATTTATACTACAAATATTATGCCTGAGAGGTTAGAAAACACAATTTTCAGTTGGGAAATTAGTTGGATTGAAGTGATTTCTAAGGCAGCAAAAGCAGAAAGGTAGCAAAATTTTCATAGGTCGTTTGTATTGTCTGTTTATGTTCTGTCATTCGTCTTAATTAAAACTTGATCTTTCATAACAATTTATTATATGTTCTGATATTTATACGGTGCTGTTCTATATTTTCCACCTCTTTTCTACTGCTTTTGTTGATCTTATCTTGATGTTTTTGTGCTCGTTACTTCTATACTGTTTGTTGGACCATATACACATTTGTACTTGCACACGCATAAACTTATGTATTGGAAGCAAATTATTTATTTCTCCATATCCAGCAATAATTGTGACTTTGACCTGTGGCTCATTATTTAACCTTTTGGGATGCTTTATCTTTTTTTTTTTTTCTCTTTCCAACACCATTTTCCTTACACACTTCAAAATGAACCTCAGTTCAAGATGGAAATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGCTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTTTCAGAGGCAAGTCAAGGTGAGCATCACAATCCACTTCTGTAGTCCATTCTTTTTCGGCTATGCTGTCACCCTGAATGTGGTTCTATCATCTATGTGAACATTCCTGATATCTGGAAGTGTTTCTTCCTCTGATTTGGTTATTGGTTTCTCTATTGTGAGGATTAATATTGACTGATGGTGCTGTAGAATTTTTATTAAATTTATGTATGTTTTTCGACAAGGAAGAGAGAAATTCATTCAACTTAGAGGCCAGAGGGAAGAGTTATCCCTTTGCCAAGGAGGTTATGAAAAGCCTCAATATTTTAAATTAATAAAAATGCTGCTGTAGTTACAAAAATCCCTATAAGAGGCACTCAAAATGGAGAGGCCATACGTGGTGCATTTAGCCTTAACAGTATCACCAGATATCCTATTGTTCCTCTCTTGCCAAATGGACAAAGTGCTCTAGCTGTGCTTTTCCATAAGATTTTGGATTTTAAGTCACCACTCTGAGAGCAGTTACTGGGAGCCAATCTGCAATATTGTTAGGGAAACAGCAGTTGTGCCCAAAAATTTTCAAAAGGGATGTTACCAGTTAGCTACAAAATTACAATGAATGAAAAGGTGGTCAATAGCCTTTTCATCCTTCTTAGTTTTAGGACAAATCTAAGGGGAGATAGTGGAAGGGATTTTTTTTTGAATTGTCTCTCGAGTGTTTTCAAATCTTTAATACCGTGAACCGAATGTAAAACTTAAATTTGTTTTGGGAACTTGCCACCCCAAGTGTGCTTGGTCAGTAGAGTACTCAACTTAGAGCAATTGGAGTTGAGTTTAGGCAGTTTTTAGGGCCTCATGAGATTCAAAGCTGAGAAGGGGCAGCGGAGTCGGTTTTGGGAGGATTTCTTGGGCCATGGAGACCCCTCTTGCCACTGTTTTCCCCGAGTTTTATGCTTTATCTACTAAAAAGGGGCGGTTATTGCTGATTGTTAGATCTCTCTCTCTCTATCTCAGACTTGAGACTTAGGGATTAGGAGAAGATTCTTTGACACAGAAATTCCAAGGTGGGCTGGATTTGCTGAGAAATTAGATGATATTCTATCTAATTGGAGTTGGCAAAGACGGGATGCTTTGGGAGATGGAATCCTGGGGTCTTTTTTCCTGCTATATTTGACGTCAATCACTAAGCTGAATGCCAAGCTGGCCTTGGTGGATTATATATGGAGGTTCAAAGCTCCGAAGAAAGTGAATTCTTTCTGTGTGGACCTGTTTTTATAGAGGTTTGAACACTGCAGATAAGCTTCAAAGGAATTTCCTAGGTGGCCGTTATCTCCCCCTATTTGCTGCCCAGTGCCTCTGTTCTTTCCCAAGAAAAGACTTTAGACCACTTGTTTCTCTTCTGCCCCTCTGCTCAGCATGCCTCGTTTTCCCTATTTGCTGTTTTTGATTTGGCTTGTTGTCTTCCAGAGAAGGTGGATTTGTGGCTTCTGGAATATTTTGGTGGAGAGATGTTTAGAGGCAAAGCCAAAATTCTGCGGGGTTGTGCTGTGAGGGTTATTTTTTGGCTTAGTTGGAAAGAAAGAAATCAGAGAATCTTTTAAGATAGGTTGTCAACTAGATTTTTTTTTTTTTTTGGGGGGGTAGTGTACAACATACTACCTTGGTGGTGTTCAAACCACAAGATTTATGCAAGTACAGCACCATCGTGATAATGATTGGAAAACTTTGATTTTCTAGTTTTCTTTTGATAGCGAGGGTTCCCTCAACCTGACTCCTAGGCTGTTATCCCTGACCTTTTTGTTAATATATTCTGATGTTTCTTATATAAAAAATAAGTCGTCCCAATTTACAATAAAAGAGCTGCTTCTTTCAGTTCAGAGTCTGATAGAATTTACTTTGTTGGAAGAATAGGTCCTCTCCTTGATCCGTCTTGAAGAAGCCTCCTTCAAATTTAAGACTCTCCAGATATCCTTGATAATATCATAAATTCTTGGGAAGGAGGTACTCAGTATACTGGAATCTACTCAAATATCTTCCAAAGACAAATTTTGTTCTGTTCTCAACTTTGAAAGAAATCTCTCTCTCTTTTTTTTTTTCCCTAATCTCAGATTCTGATGGCATAAGCTTCCTACATGGTTGCCTCCAATTTTTTTTCTGAACCATCCAAGAGGGTTGGAACAATATCTGCTCCACTCTCCTCCTAAAGAATTCTCCTCGTTGATGTATCTCCACAAAAATTCTGTAGCCTCTTTTTTGTGTGTAAGGTTTCCAACCCCTGCGCCCTTGAGAGAAGTTGAGTGGGCAATCAATTTCCTCTTATCCAATTGTGACTGCCTTGTCTAAAATTTTCCTCTTCCAAGTGAAATCTCTTAGGGTCTTCTCCATACTTTTTGCAAACGTCGACTGGATTCTAAATAGGGAGAAATAATAGTTTGGATTAATGGAGATAATCATTAATCACTTGAGCCAGTAAATTGACCATCTTTTTTTTTTTTTTTTTGGTTTATATTCGCGAGTGTCTACGCTAGCTTGAGTGCACTTCGATTAATCTCATGGGACAATCGCTTGACCCTACGTCATTTGATTGCCAAGATAATTCGTTGGATGTTAAATCTTATGCTCTTGCTGACTTATTTTTTATGCTCTTTTGTTGTAAATGTTATGTTCCTTCATATACACTCTCAAATTATGTCTATTGGAAAGGATTTTGTAATCTTCCCTGGCTTGGGGTTCGACTTTTCTTCCTTTTTGTAATTTCAAACTATCTAAGGACTTTATTTTTCAGCCAACACCTTAGAATTTACTTTATACAGGAGGAGGTGTCTAAACTTATAGTTATTGGTCCAACTCACCATGGCAGCATTGTCTTAAGTTTCATTGGTGCATTTGTTGACAACCCCCTTTCAAAAAAATCTTGGAACTCTTTCTAGAAGTCTTCTTCGGAAGTGTTCCGCTTCCATTATTTTTCAACACATCAGCAGTCGTACCTCATTGGCCTGGTCTAGGAAGATTTCGGTTAACAAGCATTTTAGCTGCTTAGTAGAATGCCTTCCTTTCCTGGGTCCCTCAACCACTTCAAGTTGAGAAAATGGGTCTGCGATGAACATTTTGGAAGACAAACCTTTTATTGTTGTTTTTTGAAAATAACGTGCTAAAATAATCAATCATTGTTCACCACCCCCTCTTCAACATTGAGACTTCACCTTTAATAACAATCAAGAAAGAGATAAAATTTAATCCCTTCTTATTCTAGAAGACATCCAGGTAGGGAAAAGTCTTGAGTTCTATCTCCCTTTTTCAGCTAGTTAGTCCTCCACATTCTCTGCTCGTTTGCAACACACTCCAACAATTTTGATTTACATACCTGTCTCGTCTAGGGAATGATTTATGTAATGCAACTGGCGACATCCCTGAAAACCTCTCTGTTCCACCAACTTTGCAAAGGCTTGAGGCTTTACTGCTAAATGAAGGTATAACCTAGCCACCCATGACCTGAGGGCTATCTCACCACTAACTTGAGATTTCCCATAAAAGAAGGGTAGTCTAGCCAGATTTTTTTGGGAATCTAAAAGGCGTGGAGCTCCATTTAAGACAACAAAGAGAGTAAGCACAATGACGGAGTGATTTTGGAAAGCTTGCCAACCAAAGCTTCCTTTTAAAATCCTACCAGCTCGAGGAGACCAAAAAACTGTCTGTTTTAGTGAAGATGGGAGCATTGATATTGGACCAAGTGCAGTCATCATTGCTGAGATGGATATCAATGAGAGATATATCTCCCGTTAGACTATTAGAAGATTTCACGGTCTTGGTAATTCTACCTTGAAGATTTTTCATCGAGCATTCTAACTTCATCAAAATAATCTCCTCCAACACACCATCTTCCATGACATGGGGGGCAGGTATCTTGGTTCTCCCTCCAACATTCCTTTATATAATGGTAAGAAAGACTCTAAACCCCCAAAATATAGCTGCTTTTGTCATCTTCAAATTTGATATACAGAAAAAGACCCCGTCAAGGAAGTGATCAACTTGACACGAAATTTCTTATACTTAACAGTCCAACCAGCTGATCCAGTAGCCTTGAAAGACGAACCTATGTTTGTTGGAACTCTTAACCGATTTGATAGAACTCCTGCCAACTTTTATTTATTTAAACTCTTGTAGAATGAAAATATATTGACTATTTCTTAAGTCCTTAATAACACATGGGAAACACCTAATGGCTAACTCCCAAGCGTTTCAGCACAAAATCTTCATAAAACGACTAGCGCTGGTTCAGGCTGGAACATTTTTGTCCTGTGTTCCTGCAGGGATTCAAAAAGCTTTTCAGTTCCTCCACGACCACAATCTTTCTGATACTGGTTCTTTTATTGAACTTTTTGCTGGGAATCAATCTGATACGCAGATTCAGATACCTTGGAGAATTAATGAGCTTCTTAAAGGAAGGGAATTGTATCTGGGTTCTGAGCTCGTTTCTCATGTCTTGTTTATACAGCTCCCTGGGTTTCTTTCTAGCCTACCAGCTGTGACTGGATTGCTTGCATGTCTAACCAAAGTCTTCCTTTGCTGGAGCTCGTTTCATGCTGTAAAATTTGATCTATAATCGATTTTTCATACGAGACAACGCTTGTAGAGTAAAAATATTTCTACAAAAATCTTGGTGTGTACCTTTTTTCCCTCATGAGTCATTAAATATACTACATTGATGAAAACACTTCTTATACATATTTCCTGTTGCCTATATTTGGAATGGTATTTGAAATTTTGTTCATGTAATGAGATAATAGAACATGCCAAGTAGTGAAGCATAATCTTAAAGTTTGGATGGAGATGCATTGGTCGTAGTCAGCTAATGATTTATCATTTTGAGTCTTCATTATTGATTTTGACTCTTTGAAGATTGCTCCGAAAAAATTCTTTTGTAGGTAAGATGTCAATGGAAGGTAAAGTGGAACATAAATTCGATATGAAGCCTCATGGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATACAAGTACATCATCAGGAGCCTTTTTTAAAACTTTTCTTTAGCCCTTTTTAGCATTCTATGTTTGCACAACTTAACAATTTACATTCCCCTGATGTGTTGGTAAGGTGATAGACAATGACCGTGGAGTTCATATGAGGCCAATGCCTGGGATGGTTGGTTTGATCAGCTCAACTTCAAAGGTATATCTTTGCTCTGTTTTGACTTTCATCAACCTTCTGAACTTTCACGTTCTAAGTACGATTTTACGATCAATCATTTACGGTAGGAAAAGAAGAAGGTGGCACCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGGGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCAGTATGTCTACTAATCTTTTCCTCCTTTATTGATGTCTTGTAATATTACTTTTTTTTTTTATGTTCACTACAGATTATAAATTTTGTGGCCATCTCCTTTCATCATATTTATTAGGTTAAATAATAAGTTTGATCTATGAATTTTTAGGTTGTCTACTTAATTGTTGTAATTTAAAAAGTTCTAATAATTATAGTCTCTTCCCTTTCAATATTGGGTCTATTTAGTCCCTGTGCTTAAAAAAATATAATAGGCTATTGAACTTTCAATTATGTCTAATATGTCCTCGTCGTTAACTTCAGTTTTAATGCTTACATCACTAAATCCACTTGAAATTGACTCACCATGTAATCCTTTAACAACATAGTCAGAGTGCTACATAACAACGTTAAAGTGACGAAAGTAACAATATAAACTTATTAGATACAAAATCGTTAATTATAAGATCTATTAAAAAATATAGAAATCAACTAGACAACTTTGGAAGTTCGATGATCTATGATAAACTTTTCAAAGGACGTGGACTAAATAAACCCAACCTTAGTTCTAGGGCTTAACTTGTAATTTAACCCATTTATTATTTGCTTTAGTGGTACATAAATTGCGGTTGAGTTCTCAGAACAATTGTGGTTCCTTCTCTTTGCAGCAATTCTTGAAAGAGATACTGAACGAGCTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAGTCTGTCGAGGAGACCGGCGGAGAG

mRNA sequence

ATGGAAGACGAGCACGGCGGCGGCGGCAGTAGCAGTAACTTGGATACAGGGAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCCTTGCTGGTCGCGAAGTCATGGCAGTCTCACCCTCCCTCTGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTCCAATCCGACGAGTCCTCTTCTCTCCAGTTCAAGATGGAAATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGCTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGTAAAGTGGAACATAAATTCGATATGAAGCCTCATGGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATACAAGTGATAGACAATGACCGTGGAGTTCATATGAGGCCAATGCCTGGGATGGTTGGTTTGATCAGCTCAACTTCAAAGGAAAAGAAGAAGGTGGCACCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGGGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAACGAGCTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAGTCTGTCGAGGAGACCGGCGGAGAG

Coding sequence (CDS)

ATGGAAGACGAGCACGGCGGCGGCGGCAGTAGCAGTAACTTGGATACAGGGAAGGCGGACAGATCAGTGTGGCTGATGAAGTGCCCCTTGCTGGTCGCGAAGTCATGGCAGTCTCACCCTCCCTCTGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTCCAATCCGACGAGTCCTCTTCTCTCCAGTTCAAGATGGAAATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGCTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGCGTCTTTTCAGAGGCAAGTCAAGGTAAGATGTCAATGGAAGGTAAAGTGGAACATAAATTCGATATGAAGCCTCATGGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATACAAGTGATAGACAATGACCGTGGAGTTCATATGAGGCCAATGCCTGGGATGGTTGGTTTGATCAGCTCAACTTCAAAGGAAAAGAAGAAGGTGGCACCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGGGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAACGAGCTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAGTCTGTCGAGGAGACCGGCGGAGAG

Protein sequence

MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHGENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

Homology

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BLAST of MS016863 vs. NCBI nr
Match: XP_022144312.1 (transcription initiation factor IIF subunit beta [Momordica charantia])

HSP 1 Score: 519.2 bits (1336), Expect = 2.0e-143
Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH
Sbjct: 63  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 122

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 123 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 182

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 183 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 242

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVEETGGE
Sbjct: 243 QGTYELKPEYKKSVEETGGE 262

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BLAST of MS016863 vs. NCBI nr
Match: XP_008444765.1 (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] >KAA0065193.1 transcription initiation factor IIF subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 512.7 bits (1319), Expect = 1.9e-141
Identity = 254/260 (97.69%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

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BLAST of MS016863 vs. NCBI nr
Match: XP_004152667.1 (transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 hypothetical protein Csa_021785 [Cucumis sativus])

HSP 1 Score: 510.8 bits (1314), Expect = 7.1e-141
Identity = 254/260 (97.69%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

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BLAST of MS016863 vs. NCBI nr
Match: XP_038884084.1 (transcription initiation factor IIF subunit beta-like [Benincasa hispida])

HSP 1 Score: 508.4 bits (1308), Expect = 3.5e-140
Identity = 255/260 (98.08%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of MS016863 vs. NCBI nr
Match: XP_023002475.1 (transcription initiation factor IIF subunit beta [Cucurbita maxima])

HSP 1 Score: 503.8 bits (1296), Expect = 8.7e-139
Identity = 252/260 (96.92%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           Q +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QPEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of MS016863 vs. ExPASy Swiss-Prot
Match: O94424 (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfg2 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-21
Identity = 81/256 (31.64%), Postives = 123/256 (48.05%), Query Frame = 0


Query: 11  SSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKME 70
           + +LD G+    VWL+K P  +   W S P  D   L  V +  D +Q    +S      
Sbjct: 20  AGDLDLGQIGSRVWLVKIPKFLMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNS------ 79

Query: 71  MAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSME-----GKVEHKFDMKPHGENLE 130
               E  +VPK ++L +   FV        S+   SM+     G V H+ ++ P     +
Sbjct: 80  ---PENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--D 139

Query: 131 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDV 190
            Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S ST+   + V P     +
Sbjct: 140 DYRRVMQKRALAASAPKRKVQMID-DRGGSLL-APGTLGSRSRSTTSFIRNVKPRTGEGL 199

Query: 191 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 250
           K +R  R EL DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y
Sbjct: 200 KNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKY 259

Query: 251 ELKPEYKKSVEETGGE 261
            LKPEYK +++    E
Sbjct: 260 SLKPEYKGTMDAASVE 262

[Close]

BLAST of MS016863 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-17
Identity = 74/253 (29.25%), Postives = 118/253 (46.64%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKMSMEGKVEHKFDMKPHGENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P     
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAN-- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDV 192
           E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 193 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 252
           KR R D+  + D++F  FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTW 246

Query: 253 ELKPEYKK-SVEE 257
           ELKPEY+   VEE
Sbjct: 248 ELKPEYRHYQVEE 246

[Close]

BLAST of MS016863 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-17
Identity = 72/247 (29.15%), Postives = 114/247 (46.15%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKMSMEGKVEHKFDMKPHGENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P     
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS-- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDV 192
           E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 193 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 252
           KR R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTW 240

[Close]

BLAST of MS016863 vs. ExPASy Swiss-Prot
Match: Q54KT7 (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2f2 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-16
Identity = 70/245 (28.57%), Postives = 113/245 (46.12%), Query Frame = 0


Query: 14  LDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAG 73
           ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G
Sbjct: 13  VNTDNADNQVWLIKVPKFLSESWQK--------IGQGEIGQIHIKGGDNISLSY-----G 72

Query: 74  TETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHGENLEMYGKLCRE 133
            + G   +  +     D  P+ +FSE   G +++EG +  + D+K   E+   Y  L + 
Sbjct: 73  PDVGQEFQLITTANTLDNQPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQYRDLMKS 132

Query: 134 RTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKR 193
           R  K   K R  QVID               L + T     K KV+ V     K+S  K+
Sbjct: 133 RHTKYNTKTRMTQVIDESE------------LFTPTLFDANKVKVSTVGITQKKKSTDKK 192

Query: 194 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 252
            +    E+ D++F  F  + +  LK L   T+QP   LK IL ++C+ NKRG     YEL
Sbjct: 193 EKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYEL 231

[Close]

BLAST of MS016863 vs. ExPASy Swiss-Prot
Match: P41900 (General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-16
Identity = 72/260 (27.69%), Postives = 122/260 (46.92%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQ 72
           +LD   A R VWL+K P  +A+ W+  P +           P   A+V LSL P    L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74

Query: 73  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-------MCVFSEASQGKMSMEGKV 132
            +E    +  ++++      V K  +L +F    P           ++    K+ MEG++
Sbjct: 75  PEEKIPTEHILDVS-----QVTKQ-TLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRI 134

Query: 133 EHKFDMKPHGENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK 192
             K + +P  +N   Y KL  E   K+    R++Q ID    +     P      +   +
Sbjct: 135 VQKLECRPIADN--CYMKLKLESIRKASEPQRRVQPIDK---IVQNFKPVKDHAHNIEYR 194

Query: 193 EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 252
           E+KK      ++ K+ R D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++
Sbjct: 195 ERKK------AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 254

[Close]

BLAST of MS016863 vs. ExPASy TrEMBL
Match: A0A6J1CTB7 (Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 GN=LOC111014025 PE=3 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 9.7e-144
Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH
Sbjct: 63  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 122

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 123 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 182

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 183 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 242

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVEETGGE
Sbjct: 243 QGTYELKPEYKKSVEETGGE 262

[Close]

BLAST of MS016863 vs. ExPASy TrEMBL
Match: A0A5A7VAJ9 (Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005300 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.1e-142
Identity = 254/260 (97.69%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of MS016863 vs. ExPASy TrEMBL
Match: A0A1S3BBV5 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103488014 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.1e-142
Identity = 254/260 (97.69%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of MS016863 vs. ExPASy TrEMBL
Match: A0A0A0LRL0 (Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=Csa_2G363560 PE=3 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.4e-141
Identity = 254/260 (97.69%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of MS016863 vs. ExPASy TrEMBL
Match: A0A6J1KP21 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496301 PE=3 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.2e-139
Identity = 252/260 (96.92%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDE+ GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDEN-GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           Q +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QPEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEETGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of MS016863 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 353.2 bits (905), Expect = 1.8e-97
Identity = 183/270 (67.78%), Postives = 214/270 (79.26%), Query Frame = 0


Query: 1   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVI 60
           MED H       NLD  K+DRS+WLMKCP++V K+W         S   SD P  +AK++
Sbjct: 1   MEDIH-------NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIV 60

Query: 61  LSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKV 120
             +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG  + EGKV
Sbjct: 61  REVDPLRDD--SPPEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKV 120

Query: 121 EHKFDMKPHGENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK 180
           +HKFDMKP+GE +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SK
Sbjct: 121 DHKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSK 180

Query: 181 EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 240
           EK+K  PVKQ++VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNEL
Sbjct: 181 EKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNEL 240

Query: 241 CVYNKRGTNQGTYELKPEYKKSVE-ETGGE 261
           CVYNKRG+NQGTYELKPEYKKS E +TGG+
Sbjct: 241 CVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]

BLAST of MS016863 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 297.7 bits (761), Expect = 8.8e-81
Identity = 152/251 (60.56%), Postives = 195/251 (77.69%), Query Frame = 0


Query: 14  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSL 73
           L+TG A+RS+ LMK P LVA S QSH        P DP  P AKVIL +DPL + E    
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL-AHEDEGT 82

Query: 74  QFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHGENLE 133
           QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GKMS+EGK+++KFDM+PH EN+E
Sbjct: 83  QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIE 142

Query: 134 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVK 193
            YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++K
Sbjct: 143 SYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLTN-RTSEMK 202

Query: 194 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 253
           RTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYE
Sbjct: 203 RTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTYE 262

Query: 254 LKPEYKKSVEE 257
           LKPEYKK+ +E
Sbjct: 263 LKPEYKKATQE 269

The following BLAST results are available for this feature:

BLAST of MS016863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144312.1	2.0e-143	99.62	transcription initiation factor IIF subunit beta [Momordica charantia]	[more]
XP_008444765.1	1.9e-141	97.69	PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] ...	[more]
XP_004152667.1	7.1e-141	97.69	transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 h...	[more]
XP_038884084.1	3.5e-140	98.08	transcription initiation factor IIF subunit beta-like [Benincasa hispida]	[more]
XP_023002475.1	8.7e-139	96.92	transcription initiation factor IIF subunit beta [Cucurbita maxima]	[more]

BLAST of MS016863 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O94424	3.4e-21	31.64	Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (s...	[more]
Q2T9L9	6.7e-17	29.25	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ...	[more]
Q01750	6.7e-17	29.15	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
Q54KT7	1.5e-16	28.57	General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
P41900	2.0e-16	27.69	General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of MS016863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTB7	9.7e-144	99.62	Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 ...	[more]
A0A5A7VAJ9	9.1e-142	97.69	Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BBV5	9.1e-142	97.69	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LRL0	3.4e-141	97.69	Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1KP21	4.2e-139	96.92	Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of MS016863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75510.1	1.8e-97	67.78	Transcription initiation factor IIF, beta subunit	[more]
AT3G52270.1	8.8e-81	60.56	Transcription initiation factor IIF, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 186..253 e-value: 3.9E-35 score: 121.8
IPR040450	TFIIF beta subunit, HTH domain	PFAM	PF02270	TFIIF_beta	coord: 188..251 e-value: 1.2E-20 score: 73.4
IPR040504	TFIIF, beta subunit, N-terminal	PFAM	PF17683	TFIIF_beta_N	coord: 21..135 e-value: 4.2E-6 score: 27.5
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 1..256
None	No IPR available	CDD	cd07980	TFIIF_beta	coord: 13..119 e-value: 5.6366E-20 score: 80.834
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 1..256
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 186..252
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 11..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016863.1	MS016863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005674	transcription factor TFIIF complex