MS016854 (gene) Bitter gourd (TR) v1

Overview


Name	MS016854
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	26S proteasome regulatory subunit 10B
Location	scaffold9_1: 496254 .. 496833 (-)
RNA-Seq Expression	MS016854
Synteny	MS016854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAATGATAATGGCTACGAACAGGCCAGATGTTCTTGACCCTGCACTTCTTCGACCAGGGCGATTGGACCGTAAAATAGAGATTCCGCTGCCAAATGAGCAATCCAGAATGGAGATCCTGAAGATTCATGCTGCTGGAATTGCCAAGCATGGTGAGATAGACTATGAAGCTGTTGTAAAGCTTGCAGAGGTAACCCTGCAGTTCTTTTTGTCTATTTGATTTCTTTTAATAGCTTTGTCCATAACCTTTAGTGCTTGATTCTCTCCTTTGTCTAGGGATTTAATGGGGCTGATTTGCGGAATGTCTGCACTGAAGCTGGAATGTCAGCTATCCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGTGACTTTTTTTTCCCCTTCTTCTCTAGCATTCTTTAGCATATTAATTATCGTGTTGCAATGGATTGGATCCCTACAGAGATAAGGCTCTCTCTTCCCAATACTCACTTTCCATAATCTTCTGGTGTTCAGGCAGTACGAAAGCTAAACGAAGCGAAGAAACTCGAGTCCAGTGCACACTACAGTGCTGATTTCGGAAAGGAG

mRNA sequence

GTCAAAATGATAATGGCTACGAACAGGCCAGATGTTCTTGACCCTGCACTTCTTCGACCAGGGCGATTGGACCGTAAAATAGAGATTCCGCTGCCAAATGAGCAATCCAGAATGGAGATCCTGAAGATTCATGCTGCTGGAATTGCCAAGCATGGTGAGATAGACTATGAAGCTGTTGTAAAGCTTGCAGAGGGATTTAATGGGGCTGATTTGCGGAATGTCTGCACTGAAGCTGGAATGTCAGCTATCCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGTGACTTTTTTTTCCCCTTCTTCTCTAGCATTCTTTAGCATATTAATTATCGCAGTACGAAAGCTAAACGAAGCGAAGAAACTCGAGTCCAGTGCACACTACAGTGCTGATTTCGGAAAGGAG

Coding sequence (CDS)

GTCAAAATGATAATGGCTACGAACAGGCCAGATGTTCTTGACCCTGCACTTCTTCGACCAGGGCGATTGGACCGTAAAATAGAGATTCCGCTGCCAAATGAGCAATCCAGAATGGAGATCCTGAAGATTCATGCTGCTGGAATTGCCAAGCATGGTGAGATAGACTATGAAGCTGTTGTAAAGCTTGCAGAGGGATTTAATGGGGCTGATTTGCGGAATGTCTGCACTGAAGCTGGAATGTCAGCTATCCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGTGACTTTTTTTTCCCCTTCTTCTCTAGCATTCTTTAGCATATTAATTATCGCAGTACGAAAGCTAAACGAAGCGAAGAAACTCGAGTCCAGTGCACACTACAGTGCTGATTTCGGAAAGGAG

Protein sequence

VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLNEAKKLESSAHYSADFGKE

Homology

[Close]

BLAST of MS016854 vs. NCBI nr
Match: XP_022144313.1 (26S proteasome regulatory subunit S10B homolog B isoform X1 [Momordica charantia])

HSP 1 Score: 237.3 bits (604), Expect = 8.1e-59
Identity = 128/147 (87.07%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 278 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 337

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-VTFFSPSS--------LAFFSI 120
           KLAEGFNGADLRNVCTEAGM+AIRAERDYVIHEDFMK V+FF+ SS        L F S 
Sbjct: 338 KLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKVVSFFNFSSIQLECFLILTFTSC 397

Query: 121 LIIAVRKLNEAKKLESSAHYSADFGKE 139
            I AVRKLNEAKKLESSAHYSADFGK+
Sbjct: 398 DIQAVRKLNEAKKLESSAHYSADFGKD 424

[Close]

BLAST of MS016854 vs. NCBI nr
Match: KAA3453639.1 (26S protease regulatory subunit S10B-like protein B [Gossypium australe])

HSP 1 Score: 230.3 bits (586), Expect = 9.9e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 283 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 342

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 343 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 402

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 403 EAKKLESSAHYSADFGKE 403

[Close]

BLAST of MS016854 vs. NCBI nr
Match: MBA0565823.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 230.3 bits (586), Expect = 9.9e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 189 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 248

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 249 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 308

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 309 EAKKLESSAHYSADFGKE 309

[Close]

BLAST of MS016854 vs. NCBI nr
Match: MBA0775682.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 230.3 bits (586), Expect = 9.9e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 328 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 387

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 388 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 447

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 448 EAKKLESSAHYSADFGKE 448

[Close]

BLAST of MS016854 vs. NCBI nr
Match: MBA0808597.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 230.3 bits (586), Expect = 9.9e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 107 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 166

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 167 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 226

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 227 EAKKLESSAHYSADFGKE 227

[Close]

BLAST of MS016854 vs. ExPASy Swiss-Prot
Match: Q9SEI3 (26S proteasome regulatory subunit 10B homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT4A PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-57
Identity = 114/138 (82.61%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+V
Sbjct: 279 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIV 338

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRN+CTEAGM AIRAERDYVIHEDFMK                 AVRKL+
Sbjct: 339 KLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMK-----------------AVRKLS 398

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESS+HY+ADFGKE
Sbjct: 399 EAKKLESSSHYNADFGKE 399

[Close]

BLAST of MS016854 vs. ExPASy Swiss-Prot
Match: Q9MAK9 (26S proteasome regulatory subunit S10B homolog B OS=Arabidopsis thaliana OX=3702 GN=RPT4B PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 113/138 (81.88%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+V
Sbjct: 279 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIV 338

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KL EGFNGADLRN+CTEAGM AIRAERDYVIHEDFMK                 AVRKL+
Sbjct: 339 KLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMK-----------------AVRKLS 398

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESS+HY+ADFGKE
Sbjct: 399 EAKKLESSSHYNADFGKE 399

[Close]

BLAST of MS016854 vs. ExPASy Swiss-Prot
Match: Q54PJ1 (26S proteasome regulatory subunit 10B OS=Dictyostelium discoideum OX=44689 GN=psmC6 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-44
Identity = 91/131 (69.47%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VK+IMATNRPDVLDPALLRPGRLDRKIEIPLPNE  R+++LKIHAA I KHG++DYEA+ 
Sbjct: 277 VKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIA 336

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLA+GFN ADLRNVCTEAGM AIRAERDYV+ EDFMK                 AVRK  
Sbjct: 337 KLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMK-----------------AVRKCQ 390

Query: 121 EAKKLESSAHY 132
           EAKKLE    Y
Sbjct: 397 EAKKLEGKLDY 390

[Close]

BLAST of MS016854 vs. ExPASy Swiss-Prot
Match: P62333 (26S proteasome regulatory subunit 10B OS=Homo sapiens OX=9606 GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-42
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+V
Sbjct: 273 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIV 332

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMK                 AVRK+ 
Sbjct: 333 KLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMK-----------------AVRKVA 386

Query: 121 EAKKLESSAHY 132
           ++KKLES   Y
Sbjct: 393 DSKKLESKLDY 386

[Close]

BLAST of MS016854 vs. ExPASy Swiss-Prot
Match: P62335 (26S proteasome regulatory subunit 10B OS=Ictidomys tridecemlineatus OX=43179 GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-42
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+V
Sbjct: 273 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIV 332

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMK                 AVRK+ 
Sbjct: 333 KLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMK-----------------AVRKVA 386

Query: 121 EAKKLESSAHY 132
           ++KKLES   Y
Sbjct: 393 DSKKLESKLDY 386

[Close]

BLAST of MS016854 vs. ExPASy TrEMBL
Match: A0A6J1CSZ0 (26S proteasome regulatory subunit S10B homolog B isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014026 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.9e-59
Identity = 128/147 (87.07%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 278 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 337

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-VTFFSPSS--------LAFFSI 120
           KLAEGFNGADLRNVCTEAGM+AIRAERDYVIHEDFMK V+FF+ SS        L F S 
Sbjct: 338 KLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKVVSFFNFSSIQLECFLILTFTSC 397

Query: 121 LIIAVRKLNEAKKLESSAHYSADFGKE 139
            I AVRKLNEAKKLESSAHYSADFGK+
Sbjct: 398 DIQAVRKLNEAKKLESSAHYSADFGKD 424

[Close]

BLAST of MS016854 vs. ExPASy TrEMBL
Match: A0A1U8J9K4 (26S protease regulatory subunit S10B homolog B OS=Gossypium hirsutum OX=3635 GN=LOC107904961 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.8e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 278 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 337

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 338 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 397

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 398 EAKKLESSAHYSADFGKE 398

[Close]

BLAST of MS016854 vs. ExPASy TrEMBL
Match: A0A0B0MJ37 (26S protease regulatory subunit S10B B-like protein OS=Gossypium arboreum OX=29729 GN=LOC108453819 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.8e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 278 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 337

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 338 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 397

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 398 EAKKLESSAHYSADFGKE 398

[Close]

BLAST of MS016854 vs. ExPASy TrEMBL
Match: A0A5D2ZA84 (AAA domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G275100v1 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.8e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 278 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 337

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 338 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 397

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 398 EAKKLESSAHYSADFGKE 398

[Close]

BLAST of MS016854 vs. ExPASy TrEMBL
Match: A0A0D2QNZ9 (AAA domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_009G271600 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.8e-57
Identity = 121/138 (87.68%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV
Sbjct: 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK                 AVRKLN
Sbjct: 232 KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK-----------------AVRKLN 291

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESSAHYSADFGKE
Sbjct: 292 EAKKLESSAHYSADFGKE 292

[Close]

BLAST of MS016854 vs. TAIR 10
Match: AT5G43010.1 (regulatory particle triple-A ATPase 4A )

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-58
Identity = 114/138 (82.61%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+V
Sbjct: 279 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIV 338

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KLAEGFNGADLRN+CTEAGM AIRAERDYVIHEDFMK                 AVRKL+
Sbjct: 339 KLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMK-----------------AVRKLS 398

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESS+HY+ADFGKE
Sbjct: 399 EAKKLESSSHYNADFGKE 399

[Close]

BLAST of MS016854 vs. TAIR 10
Match: AT1G45000.1 (AAA-type ATPase family protein )

HSP 1 Score: 220.3 bits (560), Expect = 9.5e-58
Identity = 113/138 (81.88%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+V
Sbjct: 279 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIV 338

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKVTFFSPSSLAFFSILIIAVRKLN 120
           KL EGFNGADLRN+CTEAGM AIRAERDYVIHEDFMK                 AVRKL+
Sbjct: 339 KLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMK-----------------AVRKLS 398

Query: 121 EAKKLESSAHYSADFGKE 139
           EAKKLESS+HY+ADFGKE
Sbjct: 399 EAKKLESSSHYNADFGKE 399

[Close]

BLAST of MS016854 vs. TAIR 10
Match: AT1G53750.1 (regulatory particle triple-A 1A )

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-24
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           +K++MATNRPD LDPALLRPGRLDRK+E  LP+ +SR +I KIH   +    +I +E + 
Sbjct: 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLA 367

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFM 97
           +L     GAD+R+VCTEAGM AIRA R  V  +DF+
Sbjct: 368 RLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFL 403

[Close]

BLAST of MS016854 vs. TAIR 10
Match: AT5G19990.1 (regulatory particle triple-A ATPase 6A )

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           +K++MATNR D+LD ALLRPGR+DRKIE P PNE+SR +ILKIH+  +     ID + + 
Sbjct: 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIA 361

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDF 96
           +   G +GA+L+ VCTEAGM A+R  R +V  EDF
Sbjct: 362 EKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396

[Close]

BLAST of MS016854 vs. TAIR 10
Match: AT5G20000.1 (AAA-type ATPase family protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1   VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 60
           +K++MATNR D+LD ALLRPGR+DRKIE P PNE+SR +ILKIH+  +     ID + + 
Sbjct: 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIA 361

Query: 61  KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDF 96
           +   G +GA+L+ VCTEAGM A+R  R +V  EDF
Sbjct: 362 EKMNGASGAELKAVCTEAGMFALRERRVHVTQEDF 396

The following BLAST results are available for this feature:

BLAST of MS016854 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144313.1	8.1e-59	87.07	26S proteasome regulatory subunit S10B homolog B isoform X1 [Momordica charantia...	[more]
KAA3453639.1	9.9e-57	87.68	26S protease regulatory subunit S10B-like protein B [Gossypium australe]	[more]
MBA0565823.1	9.9e-57	87.68	hypothetical protein [Gossypium lobatum]	[more]
MBA0775682.1	9.9e-57	87.68	hypothetical protein [Gossypium trilobum]	[more]
MBA0808597.1	9.9e-57	87.68	hypothetical protein [Gossypium harknessii]	[more]

BLAST of MS016854 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEI3	4.6e-57	82.61	26S proteasome regulatory subunit 10B homolog A OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9MAK9	1.3e-56	81.88	26S proteasome regulatory subunit S10B homolog B OS=Arabidopsis thaliana OX=3702...	[more]
Q54PJ1	5.8e-44	69.47	26S proteasome regulatory subunit 10B OS=Dictyostelium discoideum OX=44689 GN=ps...	[more]
P62333	1.1e-42	67.94	26S proteasome regulatory subunit 10B OS=Homo sapiens OX=9606 GN=PSMC6 PE=1 SV=1	[more]
P62335	1.1e-42	67.94	26S proteasome regulatory subunit 10B OS=Ictidomys tridecemlineatus OX=43179 GN=...	[more]

BLAST of MS016854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSZ0	3.9e-59	87.07	26S proteasome regulatory subunit S10B homolog B isoform X1 OS=Momordica charant...	[more]
A0A1U8J9K4	4.8e-57	87.68	26S protease regulatory subunit S10B homolog B OS=Gossypium hirsutum OX=3635 GN=...	[more]
A0A0B0MJ37	4.8e-57	87.68	26S protease regulatory subunit S10B B-like protein OS=Gossypium arboreum OX=297...	[more]
A0A5D2ZA84	4.8e-57	87.68	AAA domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G2751...	[more]
A0A0D2QNZ9	4.8e-57	87.68	AAA domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_009G271600...	[more]

BLAST of MS016854 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43010.1	3.3e-58	82.61	regulatory particle triple-A ATPase 4A	[more]
AT1G45000.1	9.5e-58	81.88	AAA-type ATPase family protein	[more]
AT1G53750.1	2.4e-24	55.21	regulatory particle triple-A 1A	[more]
AT5G19990.1	2.6e-23	54.74	regulatory particle triple-A ATPase 6A	[more]
AT5G20000.1	2.6e-23	54.74	AAA-type ATPase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..32 e-value: 6.7E-10 score: 40.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..99
None	No IPR available	GENE3D	1.10.8.60		coord: 33..99 e-value: 6.2E-21 score: 76.1
None	No IPR available	PANTHER	PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	coord: 1..98
None	No IPR available	PANTHER	PTHR23073:SF104	SUBFAMILY NOT NAMED	coord: 1..98
IPR041569	AAA ATPase, AAA+ lid domain	PFAM	PF17862	AAA_lid_3	coord: 54..96 e-value: 4.1E-11 score: 42.5
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 2..31 e-value: 8.5E-6 score: 26.2
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016854.1	MS016854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity