MS016842 (gene) Bitter gourd (TR) v1

Overview


Name	MS016842
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sm protein F
Location	scaffold9_1: 388223 .. 389913 (+)
RNA-Seq Expression	MS016842
Synteny	MS016842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGCATCCCAGTTAACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTTGCTTCTATCTGCCACTTATTTTCCTCATTTTCTCTCTCTTTTACTTCTAGCCTTATGGAATTTTTACTGACTTTCCTTGGATAGGGTTTCTCCCTCTTTTGTAATTTTATATCATCAATGAAATTGTTTCTTATCAATTCTTTTTCCTCTCTTTTTTACTGACTTTCACTTTCATCTATGTTTTAGGCTTTCTCGTCTCAGTGGACTCGTACATGAACTTACAGGTGTGTTACTACTTACATTGAAATAAATTCAGTGCTTTTCTATCCAGTTGATGCCGATTTTTTTAGTTATTTTTTGCGAGTGTAATAATCTCTCTGTCGTTTTTAAGTCTCCGTATGCTGCAGGAATCTGTAATTTACAAATTAGTGTCTGTAAGATGTTTTTACTCTAATGAATTGACACTATTAGAACTTTAAGAAGGAAACTGAGTGCAATCAACTTTTTACTTGAACCCAAGTTCAAACGTAGCACTGACATGATTCGAAGTTCCTTGTCTCTGAATCCAATTTGATGTGTTCAGTTTGTTTTCTGATTACAGTGAACTTGTTTTGAAAACAGTTTTGGAAACAGAATTTTAGTTTTGTGTTTTCATAACCATTTTTAAGAAACGTGATAGGATGGCAATGATTTGTAAATATTAACATTAGCGTGCACATTGAAATTGAATACAAATCTTAGATTTTGGAAGGAATACAAATCTTAGATTTTGGAAGGAAGAATAAGTTCATTTGTTTGATTAATCCACGGTAGCAAACTAGAAGATAACAAGAAAAAGCTTTTGTTTTTAATAGAATGTTTGTTTCAAAGAGCAGGAACTGCTTTGAAAACTGTTCCCAAATAAATCCAGTATTTTTCAGCGGCTGATTTCACTATGCAACTTTTTGAATGCAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGGTAAGCTTCTTCCAGTGGTTGCAGATTGCAATATCAAGTGCATCAAAGCTTATTTGTTGGTGGTAATGCATAGGTTCTGTTCATATATAAATAAATGCTCAAGCACAAATATGAGAATGTAACAGAAACACAACATGAAGAATAAGGCCGGGTACACACATTTGGTTTACGAGGGCTAGTGAGAGTGTGTTTGTCATGCATTTTAAAGTGCCAATGGAGGACTAAAAAGTGCTTGAGGACACAGTTGTACAATCTATAGGACAATCCTATAGAATAGATCTTGTTCAAGTTAGGTCGTAAGTAACTAGAAATTAAAAAGAACAGATAAAAATGACTTGTTTTTACATAAAGCATTGAATTAGTTTTTATTTTCCCAAAATGCTTACAAAAAACGTGCCTCAGTTCAAAATGTATCCCAAACTCACCCTAAGAACAGATCTGTAGTTTACTAGTTGTTGTATGATTCATGTTAGACACGGTCATGCCCTTAAATTTTGGGCTCTGCTCAACTGATAACTCTTCCACAAGTTCATTAGACACTGACTTATTTTCCTGCTTTTTTCTGGCAGGTGTAATAATGTTCTTTACCTTCGTGGAGTACCGGAGGATGAAGAAATTGAAGATGCGGAGCGTGAG

mRNA sequence

CAGAGCATCCCAGTTAACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGTGGAGTACCGGAGGATGAAGAAATTGAAGATGCGGAGCGTGAG

Coding sequence (CDS)

CAGAGCATCCCAGTTAACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGTGGAGTACCGGAGGATGAAGAAATTGAAGATGCGGAGCGTGAG

Protein sequence

QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERE

Homology

[Close]

BLAST of MS016842 vs. NCBI nr
Match: XP_004146017.2 (probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_008463776.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_008463777.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_011654028.1 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_038897243.1 probable small nuclear ribonucleoprotein F [Benincasa hispida] >TYK27869.1 putative small nuclear ribonucleoprotein F [Cucumis melo var. makuwa] >KAE8649817.1 hypothetical protein Csa_012166 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of MS016842 vs. NCBI nr
Match: XP_022144158.1 (probable small nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 8.2e-41
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIED ERE
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]

BLAST of MS016842 vs. NCBI nr
Match: CAB4298371.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 2  QTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 61

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAE+E
Sbjct: 62 EILIRCNNVLYLRGVPEDEEIEDAEQE 88

[Close]

BLAST of MS016842 vs. NCBI nr
Match: XP_030480982.1 (probable small nuclear ribonucleoprotein F [Cannabis sativa] >XP_030485031.1 probable small nuclear ribonucleoprotein F [Cannabis sativa] >KAF4372853.1 hypothetical protein F8388_004063 [Cannabis sativa] >KAF4400422.1 hypothetical protein G4B88_018764 [Cannabis sativa] >KAF4402702.1 hypothetical protein G4B88_012487 [Cannabis sativa])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 87

[Close]

BLAST of MS016842 vs. NCBI nr
Match: KAF4391041.1 (hypothetical protein F8388_024873 [Cannabis sativa])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
           SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGE
Sbjct: 686 SIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGE 745

Query: 62  ILIRCNNVLYLRGVPEDEEIEDAERE 88
           ILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 746 ILIRCNNVLYLRGVPEDEEIEDAERE 771

[Close]

BLAST of MS016842 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.5e-40
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]

BLAST of MS016842 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEE 81
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of MS016842 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEE 81
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of MS016842 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEE 81
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of MS016842 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEE 81
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of MS016842 vs. ExPASy TrEMBL
Match: A0A1S3CKH5 (Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of MS016842 vs. ExPASy TrEMBL
Match: A0A5D3DWN8 (Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIEDAER+
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of MS016842 vs. ExPASy TrEMBL
Match: A0A6J1CSK0 (Sm protein F OS=Momordica charantia OX=3673 GN=LOC111013917 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.9e-41
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE
Sbjct: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLYLRGVPEDEEIED ERE
Sbjct: 62 ILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]

BLAST of MS016842 vs. ExPASy TrEMBL
Match: A0A6J5WDD8 (Sm protein F OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10673 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 2  QTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 61

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAE+E
Sbjct: 62 EILIRCNNVLYLRGVPEDEEIEDAEQE 88

[Close]

BLAST of MS016842 vs. ExPASy TrEMBL
Match: A0A803QDU2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.2e-41
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          +SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LG
Sbjct: 2  ESIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLG 61

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLYLRGVPEDEEIEDAERE
Sbjct: 62 EILIRCNNVLYLRGVPEDEEIEDAERE 88

[Close]

BLAST of MS016842 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 166.8 bits (421), Expect = 7.9e-42
Identity = 76/87 (87.36%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  QSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60
          Q+IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LG
Sbjct: 10 QTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLG 69

Query: 61 EILIRCNNVLYLRGVPEDEEIEDAERE 88
          EILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 70 EILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]

BLAST of MS016842 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-41
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLRGVPEDEEIEDAERE 88
          ILIRCNNVLY+RGVPEDEE+EDA+++
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]

BLAST of MS016842 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 114.4 bits (285), Expect = 4.6e-26
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 87 E 88
          +
Sbjct: 61 D 61

[Close]

BLAST of MS016842 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

[Close]

BLAST of MS016842 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

The following BLAST results are available for this feature:

BLAST of MS016842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146017.2	6.2e-41	98.84	probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_0084...	[more]
XP_022144158.1	8.2e-41	98.84	probable small nuclear ribonucleoprotein F [Momordica charantia]	[more]
CAB4298371.1	1.1e-40	95.40	unnamed protein product [Prunus armeniaca]	[more]
XP_030480982.1	2.4e-40	97.67	probable small nuclear ribonucleoprotein F [Cannabis sativa] >XP_030485031.1 pro...	[more]
KAF4391041.1	2.4e-40	97.67	hypothetical protein F8388_024873 [Cannabis sativa]	[more]

BLAST of MS016842 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM2	5.5e-40	87.21	Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q3T0Z8	6.5e-33	79.75	Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2	[more]
P62306	6.5e-33	79.75	Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1	[more]
P62307	6.5e-33	79.75	Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1	[more]
P62321	6.5e-33	79.75	Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1	[more]

BLAST of MS016842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKH5	3.0e-41	98.84	Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1	[more]
A0A5D3DWN8	3.0e-41	98.84	Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 P...	[more]
A0A6J1CSK0	3.9e-41	98.84	Sm protein F OS=Momordica charantia OX=3673 GN=LOC111013917 PE=3 SV=1	[more]
A0A6J5WDD8	5.2e-41	95.40	Sm protein F OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS10673 PE=3 SV=1	[more]
A0A803QDU2	5.2e-41	96.55	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS016842 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30220.2	7.9e-42	87.36	small nuclear ribonucleoprotein F	[more]
AT4G30220.1	3.9e-41	87.21	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	4.6e-26	85.25	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.1	4.1e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	4.1e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..74 e-value: 6.2E-25 score: 98.8
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..72 e-value: 4.3E-22 score: 77.6
None	No IPR available	GENE3D	2.30.30.100		coord: 1..77 e-value: 3.0E-36 score: 125.0
None	No IPR available	PIRSF	PIRSF006609	snRNP_SmF	coord: 1..83 e-value: 2.2E-38 score: 128.0
None	No IPR available	PANTHER	PTHR11021:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN F	coord: 2..83
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 2..83
IPR034100	Small nuclear ribonucleoprotein F	CDD	cd01722	Sm_F	coord: 6..74 e-value: 1.83797E-49 score: 148.514
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016842.1	MS016842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0005681	spliceosomal complex