MS016820 (gene) Bitter gourd (TR) v1

Overview
NameMS016820
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Locationscaffold9_1: 228283 .. 228621 (-)
RNA-Seq ExpressionMS016820
SyntenyMS016820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGAAGAAGACCCAGAAGACGAAGGAGATTGCAGTGGCTATAGCGGAAACCTCCACCTCCAAATCCGATCATGGCGCCGCACAATCGGTGCGGCGCAGAAAGAGGGGCAGACCTCGCAAGGTCGTCGATGAAGCACAAACCGAAGAGAAGAACGAGGAACTTCCGCCGCCGGAAGTTGCAGAAACACCGCCGGAGAAGAAAGCTAGAACCACCGGAGATGAGCAGCCGACGCCGCCGCCGCCTGCCGTGGAAGGAGGTGAAAAAGAAGAACCCAAATCAGGGGACGCTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAGAGTAGC

mRNA sequence

ATGGGTAAGAAGAAGACCCAGAAGACGAAGGAGATTGCAGTGGCTATAGCGGAAACCTCCACCTCCAAATCCGATCATGGCGCCGCACAATCGGTGCGGCGCAGAAAGAGGGGCAGACCTCGCAAGGTCGTCGATGAAGCACAAACCGAAGAGAAGAACGAGGAACTTCCGCCGCCGGAAGTTGCAGAAACACCGCCGGAGAAGAAAGCTAGAACCACCGGAGATGAGCAGCCGACGCCGCCGCCGCCTGCCGTGGAAGGAGGTGAAAAAGAAGAACCCAAATCAGGGGACGCTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAGAGTAGC

Coding sequence (CDS)

ATGGGTAAGAAGAAGACCCAGAAGACGAAGGAGATTGCAGTGGCTATAGCGGAAACCTCCACCTCCAAATCCGATCATGGCGCCGCACAATCGGTGCGGCGCAGAAAGAGGGGCAGACCTCGCAAGGTCGTCGATGAAGCACAAACCGAAGAGAAGAACGAGGAACTTCCGCCGCCGGAAGTTGCAGAAACACCGCCGGAGAAGAAAGCTAGAACCACCGGAGATGAGCAGCCGACGCCGCCGCCGCCTGCCGTGGAAGGAGGTGAAAAAGAAGAACCCAAATCAGGGGACGCTTCGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAGAGTAGC

Protein sequence

MGKKKTQKTKEIAVAIAETSTSKSDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEELPPPEVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS
Homology
BLAST of MS016820 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 83/120 (69.17%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEELPP- 60
           MGKKKTQKTKEIAVAIAETSTSK +D G  QS++ RKRGRPRKV+DE Q E++N++LPP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  ----PEVAETPPEKKARTTGDEQPTPPPPAV-EGGEKEEPKSGDASRSRGRRKNKPRKSS 114
               PEV E PPEKK + T DE   PPP +V EG ++EEPK+GD SRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDE---PPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of MS016820 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 9.0e-24
Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEEL--P 60
           MGKKK QKTKEIAVAIAETS SK +D G  QS++ RKRGRPRKV+DE Q +++N++L  P
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGIGQSIQPRKRGRPRKVLDEPQNKQENKKLLPP 60

Query: 61  PPEVAETPPEKKARTTGDEQPTPPPPAVEGGEKE-EPKSGDASRSRGRRKNKPRKSS 114
            PEVAE PPEKKA+TT D+   PPP ++E G K+ EPK+GD SRSRGRRKNKPRKSS
Sbjct: 61  LPEVAENPPEKKAKTTVDQ---PPPGSMEEGSKQGEPKTGDGSRSRGRRKNKPRKSS 114

BLAST of MS016820 vs. NCBI nr
Match: KGN62596.1 (hypothetical protein Csa_022088 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-SDHG-AAQSVRRRKRGRPRKVVDEAQTEEKNEELPP 60
           MGKKKTQKTKEIAVAIAETSTSK +D G   Q ++ RKRGRPRKV++E Q E+++++ PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  P--EVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS 114
           P  EVAE PPEKK + T DE        +EG ++EEPK+GD SRSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAAL--GSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

BLAST of MS016820 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 76/120 (63.33%), Postives = 88/120 (73.33%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-----SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEE 60
           MGKKKTQKTK+I+VAIAETSTSK       HG  QSV+ RKRGRPRKV+DE   ++K   
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK--- 60

Query: 61  LPPP--EVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS 114
           LPPP  +VA+ P +KK ++TGDE P     A +  E EEPKSGD SRSRGRRKNKPRKSS
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPDSMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 117

BLAST of MS016820 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-----SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEE 60
           MGKKKTQKTK+I+VAIAE STSK       HG  QSV+ RKRGRPRKV+DE   ++K   
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLP 60

Query: 61  LPPPEVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS 114
            PP +VA+ P +KK ++TGDE P     A +  E EEPKSGD SRSRGRRKNKPRKSS
Sbjct: 61  PPPADVADKPLQKKGKSTGDEPPISMEGASKQHESEEPKSGDGSRSRGRRKNKPRKSS 118

BLAST of MS016820 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.9e-26
Identity = 83/120 (69.17%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEELPP- 60
           MGKKKTQKTKEIAVAIAETSTSK +D G  QS++ RKRGRPRKV+DE Q E++N++LPP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  ----PEVAETPPEKKARTTGDEQPTPPPPAV-EGGEKEEPKSGDASRSRGRRKNKPRKSS 114
               PEV E PPEKK + T DE   PPP +V EG ++EEPK+GD SRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDE---PPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of MS016820 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.9e-21
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-SDHG-AAQSVRRRKRGRPRKVVDEAQTEEKNEELPP 60
           MGKKKTQKTKEIAVAIAETSTSK +D G   Q ++ RKRGRPRKV++E Q E+++++ PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  P--EVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS 114
           P  EVAE PPEKK + T DE        +EG ++EEPK+GD SRSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAAL--GSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

BLAST of MS016820 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-20
Identity = 76/120 (63.33%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSK-----SDHGAAQSVRRRKRGRPRKVVDEAQTEEKNEE 60
           MGKKKTQKTK+I+VAIAETSTSK       HG  QS + RKRGRPRKV+DE   ++K   
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDKK--L 92

Query: 61  LPPP--EVAETPPEKKARTTGDEQPTPPPPAVEGGEKEEPKSGDASRSRGRRKNKPRKSS 114
           LPPP  +VA+ P +KK +TTGDE P     A +  E EEPKSGD SRSRGRRKNKPRKSS
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDEPPISMEGASKQQESEEPKSGDGSRSRGRRKNKPRKSS 150

BLAST of MS016820 vs. ExPASy TrEMBL
Match: A0A251R9L0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 61/137 (44.53%), Postives = 79/137 (57.66%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKSDHGAAQSVRR----RKRGRPRKVVDEAQTEEKNEEL 60
           MGKKK QKTKE++VAIAE + S  D G  QS  +    RKRGRPRK++++ ++ E+ +  
Sbjct: 1   MGKKKPQKTKELSVAIAE-APSTGDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEE-QST 60

Query: 61  PPPEVAETPPE------KKARTTGD---------EQP----TPPPPAVEGG-EKEEPKSG 114
           P  E A    E      KKA+ T D         EQP     P   +V GG +KEE ++ 
Sbjct: 61  PQTEEAAAAAEDVEEQSKKAKATEDEDQQEEEQQEQPKIKEEPSSASVRGGAKKEEGQAR 120

BLAST of MS016820 vs. ExPASy TrEMBL
Match: A0A6J5TRQ2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7916 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 61/139 (43.88%), Postives = 77/139 (55.40%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKSDHGAAQSVRR----RKRGRPRKVVD-----EAQTEE 60
           MGKKK QKTKE++VAIAE + S  D G  QS  +    RKRGRPRK+++     E Q+  
Sbjct: 1   MGKKKPQKTKELSVAIAE-APSTGDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQSTP 60

Query: 61  KNEELPPPEVAETPPE--KKARTTGDE--------------QPTPPPPAVEGG-EKEEPK 114
           + EE      AE   E  KKA+ T DE              +  P   +V GG +KEE +
Sbjct: 61  QTEEAAAAAAAEDVEEQSKKAKATEDEDQQEKEEQEQPKIKEEEPSSASVRGGAKKEEGQ 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065239.11.6e-2569.17zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa][more]
XP_038884964.19.0e-2468.38uncharacterized protein LOC120075548 [Benincasa hispida][more]
KGN62596.11.2e-2064.96hypothetical protein Csa_022088 [Cucumis sativus][more]
KAG7020516.12.1e-2063.33hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023537340.13.5e-2061.86uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIE67.9e-2669.17Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=... [more]
A0A0A0LRH25.9e-2164.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1[more]
A0A6J1KLK82.9e-2063.33uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353... [more]
A0A251R9L01.0e-0444.53Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1[more]
A0A6J5TRQ21.3e-0443.88Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7916 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..27
NoneNo IPR availablePANTHERPTHR37615NUCLEOPORIN NUP159-LIKEcoord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016820.1MS016820.1mRNA