MS016793 (gene) Bitter gourd (TR) v1

Overview


Name	MS016793
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	mediator of RNA polymerase II transcription subunit 18
Location	scaffold9_1: 62420 .. 64046 (+)
RNA-Seq Expression	MS016793
Synteny	MS016793

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGACTTCTATTGACAGTTTGATTCTGCAGCACGTTGAGGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAACGATTGAGACTTCATGAAATATGCCTAAAAAGTGGACCCAACTTAGGTATGCATCTTTTTCTTCATCATATTATTGTATATTTGGCCTGTCAGCATGTGATGGTTTTCTCATTGGAGGTGTTTGGTGTGAGGATTTGGATATAGCTTAAAAGTACGAATCCATGTTCATCCCGTGGGTTGTCATGTTTGGGGTTTGTTAGACAAACCCATGAGTTTCAAGTTTTCAACAGGTACCCAAACCAACCCCAATTCCTAAACTTCCAAAACCCTCTACTTAATCCCTAGACTTAATATTCCCTGGCTGAAGATGCCGAACTCACGCCCCAAATGCCCCTGTATAGTGTTTTTTATTTCATAAGAGTGATTGATGGGAGCAGCATTTCTCTTAGAAAAATGGAGGTTGTGCTTCCATTTTATTTCATGTCTAAGTTCGTAATCTCTCGGCATGATGCTAGGTGCTGTGGCTTCGGAGGTTCGGATCTTGTGTGATCTAGAGCAGGCTGAACCGGCATGGTACAACTTGGTCTTTTGCAGTAACAGCGTGTTATTTATTATATTTGGTGTTTACTCTTTTGGAGCTAACTGAATTAATGAGAAGTGTCCCCTTGATTTTTAGGACGGTTAAACATATTGGAGGGGCAATGAGAGGAGCAGGGGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTCTATTCTATGCACTTGGCTACAAGTTAGACCATGAGCTGCTTAGAGTTGGTTTTGCTTTCCGTTTCCATCGGGGTGCTCACATAACCGTGACGGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACGGATGAGGCTGTGCCTGTAACACCTGGTATACAGCTAGTCGAAGTGACAGCCCCAGCAACTTCTGAAAACTATTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGTGAATATCTTGCACCGTAAGTACCTTTATTAGGAGTAAATCTTTGTCCTAGTTCTACTCAGCTTGTGCATGTTCATTAGCCTATCTCACAGACTGGAGCTGTGATTGCTGATATGGACTTGATAATCAGCCTTATGGGTGGGTATCTTCTTGCCTTGTTGAATGACTGCTGCTGCAAAAAAAAAAAAAAAAAACACGGAACAAGTTCACAAATATCATTCATTATCTATATGTTGTTGAATTGTTTTGCATTCACAGGGCACTTTTTTACTGGATGCTTTTGCATTGTAATCAATAACTTGCTTCTCTGCCGTGGAAACCTGTAACTATATACTTGTGGGGTTAGAAAATCTAAATTGAGAGAGTTTTTATTCATGTTAGCTCAAAATAAGATCAAATACCAAATATGTCTGTCTTTTGCTATTCTGGTTGCACCTTCTAAAGTGTGACAAGAGATCAAGCTTTTATCTTTACTTTTTACAGCCTGCTGCATTTGTCGAAACCGGGAATATCCACCGGTGTCGTTCCTACTGCTGCTGCTGCTGCAGCATCTCTCCTATCTGATGGTGCAGGAACAACAATG

mRNA sequence

CTTTGGACTTCTATTGACAGTTTGATTCTGCAGCACGTTGAGGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAACGATTGAGACTTCATGAAATATGCCTAAAAAGTGGACCCAACTTAGGTGCTGTGGCTTCGGAGGTTCGGATCTTGTGTGATCTAGAGCAGGCTGAACCGGCATGGACGGTTAAACATATTGGAGGGGCAATGAGAGGAGCAGGGGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTCTATTCTATGCACTTGGCTACAAGTTAGACCATGAGCTGCTTAGAGTTGGTTTTGCTTTCCGTTTCCATCGGGGTGCTCACATAACCGTGACGGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACGGATGAGGCTGTGCCTGTAACACCTGGTATACAGCTAGTCGAAGTGACAGCCCCAGCAACTTCTGAAAACTATTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGTGAATATCTTGCACCCCTGCTGCATTTGTCGAAACCGGGAATATCCACCGGTGTCGTTCCTACTGCTGCTGCTGCTGCAGCATCTCTCCTATCTGATGGTGCAGGAACAACAATG

Coding sequence (CDS)

CTTTGGACTTCTATTGACAGTTTGATTCTGCAGCACGTTGAGGCCCTTGAGATACTTCTTCAAGGTATTTGCGGCGTTCCTAGAGAACGATTGAGACTTCATGAAATATGCCTAAAAAGTGGACCCAACTTAGGTGCTGTGGCTTCGGAGGTTCGGATCTTGTGTGATCTAGAGCAGGCTGAACCGGCATGGACGGTTAAACATATTGGAGGGGCAATGAGAGGAGCAGGGGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGTCTATTCTATGCACTTGGCTACAAGTTAGACCATGAGCTGCTTAGAGTTGGTTTTGCTTTCCGTTTCCATCGGGGTGCTCACATAACCGTGACGGTTTCATCAGTTAATAAGATGTTAAAGCTACATTCGACGGATGAGGCTGTGCCTGTAACACCTGGTATACAGCTAGTCGAAGTGACAGCCCCAGCAACTTCTGAAAACTATTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGTGAATATCTTGCACCCCTGCTGCATTTGTCGAAACCGGGAATATCCACCGGTGTCGTTCCTACTGCTGCTGCTGCTGCAGCATCTCTCCTATCTGATGGTGCAGGAACAACAATG

Protein sequence

LWTSIDSLILQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIGGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM

Homology

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BLAST of MS016793 vs. NCBI nr
Match: XP_022144379.1 (mediator of RNA polymerase II transcription subunit 18 [Momordica charantia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.3e-107
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT
Sbjct: 72  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of MS016793 vs. NCBI nr
Match: XP_011649597.2 (mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativus] >KAE8652099.1 hypothetical protein Csa_022370 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 3.1e-105
Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRILCDLEQAEP WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GA+RGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT
Sbjct: 72  GAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of MS016793 vs. NCBI nr
Match: XP_038885244.1 (mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida] >XP_038885245.1 mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida])

HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASE+RILCDLEQAEP WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEIRILCDLEQAEPTWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GA+RGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT
Sbjct: 72  GAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of MS016793 vs. NCBI nr
Match: XP_022951149.1 (mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_023536835.1 mediator of RNA polymerase II transcription subunit 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.0 bits (1003), Expect = 6.8e-105
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRI+CDLEQ EP+WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQTEPSWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRG+GAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+FRFHRG HITVT
Sbjct: 72  GAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of MS016793 vs. NCBI nr
Match: XP_008444669.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Cucumis melo])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRILCDLEQAEP WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GA+RGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRF+RGAHITVT
Sbjct: 72  GAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFYRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of MS016793 vs. ExPASy Swiss-Prot
Match: Q9SJZ6 (Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana OX=3702 GN=MED18 PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.1e-93
Identity = 167/206 (81.07%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR+LCDL+Q EP WTVKH+G
Sbjct: 14  QHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQPEPTWTVKHVG 73

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRGAGA+Q+SVLVR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF F R AHI+V+
Sbjct: 74  GAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAFHFQRTAHISVS 133

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATSENYSEVA AVS+FCE+LAPL+HLSKP
Sbjct: 134 VSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCEFLAPLVHLSKP 193

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
            ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 194 SISTGVVPTAAAAAASLMSDGGGTTL 219

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BLAST of MS016793 vs. ExPASy TrEMBL
Match: A0A6J1CS50 (mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX=3673 GN=LOC111014072 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT
Sbjct: 72  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of MS016793 vs. ExPASy TrEMBL
Match: A0A6J1GHW3 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=3662 GN=LOC111454081 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.3e-105
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRI+CDLEQ EP+WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQTEPSWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRG+GAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+FRFHRG HITVT
Sbjct: 72  GAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of MS016793 vs. ExPASy TrEMBL
Match: A0A1S3BBM1 (mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 GN=LOC103487937 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.4e-105
Identity = 201/206 (97.57%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRILCDLEQAEP WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GA+RGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRF+RGAHITVT
Sbjct: 72  GAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFYRGAHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of MS016793 vs. ExPASy TrEMBL
Match: A0A5A7VHE6 (Mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006070 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.3e-104
Identity = 200/207 (96.62%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 10  LQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHI 69
           ++HVEALEILLQGICGVPRERLRLHEICLKSGP+LGAVASEVRILCDLEQAEP WTVKHI
Sbjct: 1   MEHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQAEPTWTVKHI 60

Query: 70  GGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITV 129
           GGA+RGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRF+RGAHITV
Sbjct: 61  GGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFYRGAHITV 120

Query: 130 TVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSK 189
           TVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCEYLAPLLHLSK
Sbjct: 121 TVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSK 180

Query: 190 PGISTGVVPTAAAAAASLLSDGAGTTM 217
           PGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 PGISTGVVPTAAAAAASLLSDGAGTTM 207

[Close]

BLAST of MS016793 vs. ExPASy TrEMBL
Match: A0A6J1KK74 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=3661 GN=LOC111496026 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.6e-104
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRI+CDLEQ EP+WTVKHIG
Sbjct: 12  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQTEPSWTVKHIG 71

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRG+GAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+FRFHRG HITVT
Sbjct: 72  GAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVT 131

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVA AVSTFCEYLAPLLHLSKP
Sbjct: 132 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVASAVSTFCEYLAPLLHLSKP 191

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
           GISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 192 GISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of MS016793 vs. TAIR 10
Match: AT2G22370.1 (unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 341.3 bits (874), Expect = 5.8e-94
Identity = 167/206 (81.07%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 11  QHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQAEPAWTVKHIG 70
           QHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR+LCDL+Q EP WTVKH+G
Sbjct: 14  QHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQPEPTWTVKHVG 73

Query: 71  GAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVT 130
           GAMRGAGA+Q+SVLVR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF F R AHI+V+
Sbjct: 74  GAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAFHFQRTAHISVS 133

Query: 131 VSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCEYLAPLLHLSKP 190
           VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATSENYSEVA AVS+FCE+LAPL+HLSKP
Sbjct: 134 VSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCEFLAPLVHLSKP 193

Query: 191 GISTGVVPTAAAAAASLLSDGAGTTM 217
            ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 194 SISTGVVPTAAAAAASLMSDGGGTTL 219

The following BLAST results are available for this feature:

BLAST of MS016793 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144379.1	4.3e-107	100.00	mediator of RNA polymerase II transcription subunit 18 [Momordica charantia]	[more]
XP_011649597.2	3.1e-105	98.06	mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativ...	[more]
XP_038885244.1	4.0e-105	97.57	mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida] >XP_0...	[more]
XP_022951149.1	6.8e-105	97.09	mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_...	[more]
XP_008444669.1	1.5e-104	97.57	PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Cucumis melo]	[more]

BLAST of MS016793 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ6	8.1e-93	81.07	Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana O...	[more]

BLAST of MS016793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CS50	2.1e-107	100.00	mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX...	[more]
A0A6J1GHW3	3.3e-105	97.09	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=...	[more]
A0A1S3BBM1	7.4e-105	97.57	mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 G...	[more]
A0A5A7VHE6	1.3e-104	96.62	Mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo var. maku...	[more]
A0A6J1KK74	1.6e-104	96.60	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=36...	[more]

BLAST of MS016793 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22370.1	5.8e-94	81.07	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.320.10		coord: 10..189 e-value: 8.0E-11 score: 44.0
IPR019095	Mediator complex, subunit Med18	PANTHER	PTHR13321	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18	coord: 11..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016793.1	MS016793.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity