MS016788 (gene) Bitter gourd (TR) v1

Overview
NameMS016788
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold9_1: 27041 .. 27328 (+)
RNA-Seq ExpressionMS016788
SyntenyMS016788
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGCTGGTTCGAAGTGTTGTGTCCCGGAGCTGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGAGGCGGCGGCGGTGGGCCAAGATGTGACGAGATATATAATGATGAAGTCTCCCAACTCCACGCAAGCACTGGACAAACAGGTGGTGCTGCGGCGGATCCGGCAGCGCAAGCGAGTCAACAAGTTTCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACGGATAAAACCGGCGACACTCGTCGGAGAAAGTGGGTCGACGAACCCTTCACTTCACTC

mRNA sequence

ATGGTCGCTGGTTCGAAGTGTTGTGTCCCGGAGCTGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGAGGCGGCGGCGGTGGGCCAAGATGTGACGAGATATATAATGATGAAGTCTCCCAACTCCACGCAAGCACTGGACAAACAGGTGGTGCTGCGGCGGATCCGGCAGCGCAAGCGAGTCAACAAGTTTCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACGGATAAAACCGGCGACACTCGTCGGAGAAAGTGGGTCGACGAACCCTTCACTTCACTC

Coding sequence (CDS)

ATGGTCGCTGGTTCGAAGTGTTGTGTCCCGGAGCTGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGAGGCGGCGGCGGTGGGCCAAGATGTGACGAGATATATAATGATGAAGTCTCCCAACTCCACGCAAGCACTGGACAAACAGGTGGTGCTGCGGCGGATCCGGCAGCGCAAGCGAGTCAACAAGTTTCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACGGATAAAACCGGCGACACTCGTCGGAGAAAGTGGGTCGACGAACCCTTCACTTCACTC

Protein sequence

MVAGSKCCVPELEKIAGDQEEAEAAAVGQDVTRYIMMKSPNSTQALDKQVVLRRIRQRKRVNKFRAVVGALFSSPFTDKTGDTRRRKWVDEPFTSL
Homology
BLAST of MS016788 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0

Query: 15  IAGDQEEA------EAAAVGQDVTRYIMMKSPNSTQ-ALDKQVVLRRIRQRKRVNKFRAV 74
           IAG QEEA      EAAAVG DVTR+IM+KS  STQ +L+K VVLRRIR RKRVNKF+AV
Sbjct: 15  IAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRVNKFQAV 74

Query: 75  VGALFSSPFTDKTGDTRRRKWVDEPFTSL 97
           VGALFSSPF DK  +TR+RKWVDEPFTSL
Sbjct: 75  VGALFSSPFADKADETRQRKWVDEPFTSL 103

BLAST of MS016788 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 17 GDQEEAEA---AAVGQDVTRYIMMKSPNSTQALDKQVVLRRIRQRKRVNKFRAVVGALFS 76
          GDQE+ +    AA   DVTR+I +KS +STQ L+K VVLRRIRQRKRVNKF+AVVGALFS
Sbjct: 12 GDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFS 71

Query: 77 SPFTDKTGDTRRRKWVDEPFTSL 97
          SPF DKTG+ R+RKWVDEPFTSL
Sbjct: 72 SPFGDKTGEARQRKWVDEPFTSL 94

BLAST of MS016788 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 13  EKIAGDQEEAE-----AAAVGQDVTRYIMMKS--PNSTQALDKQVVLRRIRQRKRVNKFR 72
           +KI GDQ EAE     +AA+G  VTR+I++KS   +S QAL+K VVLRRIRQRKRVNK R
Sbjct: 13  KKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIRQRKRVNKLR 72

Query: 73  AVVGALFSSPFTDKTGDTRRRKWVDEPFTSL 97
           A VGALFSSPFTDKT +T +RKWVDEPFTSL
Sbjct: 73  AAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of MS016788 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 13  EKIAGDQEEAE-----------AAAVGQDVTRYIMMKSPNST------QALDKQVVLRRI 72
           +KIAGDQ EAE           A A+G  VTR+I++KS +S+      QAL+K VVLRRI
Sbjct: 13  KKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRI 72

Query: 73  RQRKRVNKFRAVVGALFSSPFTDKTGDTRRRKWVDEPFTSL 97
           RQRKRVNK RA VGALFSSPFTDKT     RKWVDEPFTSL
Sbjct: 73  RQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of MS016788 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-15
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 15 IAGDQEEA------EAAAVGQDVTRYIMMKSPNSTQ-ALDKQVVLRRIRQRKRVNKFRAV 74
          IAG QEEA      EAAAVG DVTR+IM+KS  STQ +L+K VVLRRIR RKRVNKF+AV
Sbjct: 15 IAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRVNKFQAV 74

Query: 75 VGALFSSPFTDKTGDT 84
          VGALFSSPF DK  +T
Sbjct: 75 VGALFSSPFADKADET 90

BLAST of MS016788 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.7e-22
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 13  EKIAGDQEEAE-----AAAVGQDVTRYIMMKS--PNSTQALDKQVVLRRIRQRKRVNKFR 72
           +KI GDQ EAE     +AA+G  VTR+I++KS   +S QAL+K VVLRRIRQRKRVNK R
Sbjct: 13  KKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIRQRKRVNKLR 72

Query: 73  AVVGALFSSPFTDKTGDTRRRKWVDEPFTSL 97
           A VGALFSSPFTDKT +T +RKWVDEPFTSL
Sbjct: 73  AAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of MS016788 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 13  EKIAGDQEEAE-----------AAAVGQDVTRYIMMKSPNST------QALDKQVVLRRI 72
           +KIAGDQ EAE           A A+G  VTR+I++KS +S+      QAL+K VVLRRI
Sbjct: 13  KKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRI 72

Query: 73  RQRKRVNKFRAVVGALFSSPFTDKTGDTRRRKWVDEPFTSL 97
           RQRKRVNK RA VGALFSSPFTDKT     RKWVDEPFTSL
Sbjct: 73  RQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of MS016788 vs. ExPASy TrEMBL
Match: A0A2N9G0R5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 20  EEAEAAAVGQDVTRYIMMKSPNSTQALDKQVVLRRIRQRKRVNKFRAVVGALFSSPFTDK 79
           EE E       VT ++ +K  +STQ LDK+VVLRRIRQRKRVNK +A   AL SSPF+ K
Sbjct: 27  EEQEVPETQNPVTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSPFSAK 86

Query: 80  TG--DTRRRKWVDEPFTSL 97
                  ++KW D+ F +L
Sbjct: 87  PDKVSVHKKKWADDAFAAL 105

BLAST of MS016788 vs. ExPASy TrEMBL
Match: A0A7J7D397 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 18  DQEEAEAAAVGQDVTRYIMMKSPNSTQALDKQVVLRRIRQRKRVNKFRAVVGALFSSPFT 77
           DQE+ E   +   VT ++ +K  ++TQ LD++VVLRRIR RKRVNK +A + +LF SP +
Sbjct: 24  DQEDPE---ISNSVTTHLYLKPAHTTQTLDREVVLRRIRNRKRVNKIKAALLSLFGSPIS 83

Query: 78  DKTGDTR--RRKWVDEPFTSL 97
            +T  T   +++WVD+ F +L
Sbjct: 84  SETEKTSVDKKRWVDDAFAAL 101

BLAST of MS016788 vs. ExPASy TrEMBL
Match: A0A7N2KSH1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 20  EEAEAAAVGQDVTRYIMMKSPNSTQALDKQVVLRRIRQRKRVNKFRAVVGALFSSPFT-- 79
           EE E       VT ++ +K  +STQ LDK+VVLRRIRQRKRVNK++A+V AL SS F+  
Sbjct: 27  EEQEVPETNNLVTSHLYIKPTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAK 86

Query: 80  -DKTGDTRRRKWVDEPFTS 96
            +K      +KW+D+ F +
Sbjct: 87  PEKAVSVHGKKWIDDAFAA 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6598407.12.2e-2374.16hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585633.11.9e-2272.29hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0065270.11.6e-2169.23hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa][more]
KGN62559.12.2e-1862.38hypothetical protein Csa_022598 [Cucumis sativus][more]
KAG7029360.13.8e-1571.05Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDJ57.7e-2269.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNJ01.0e-1862.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1[more]
A0A2N9G0R51.2e-0949.37Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1[more]
A0A7J7D3973.4e-0944.44Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 ... [more]
A0A7N2KSH13.4e-0948.10Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35324:SF4BNAA08G03750D PROTEINcoord: 14..96
NoneNo IPR availablePANTHERPTHR35324BNAA08G03750D PROTEINcoord: 14..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016788.1MS016788.1mRNA